assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000967365.1_ASM96736v1	NC_020532	Staphylococcus aureus subsp. aureus ST228, complete genome	1	164274-164358	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	164300-164332|164300-164332|164300-164332	NC_020532.1_801185-801153|NC_020532.1_801244-801212|NC_020532.1_1415618-1415586	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|402aa|up_9|NC_020532.1_153419_154625_+,NA|68aa|down_0|NC_020532.1_164419_164623_-	NA|402aa|up_9|NC_020532.1_153419_154625_+	NA	NA|402aa|up_8|NC_020532.1_154625_155831_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NC_020532.1_155841_156399_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NC_020532.1_156398_157286_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NC_020532.1_157339_158602_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NC_020532.1_158678_159824_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NC_020532.1_159888_160215_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NC_020532.1_160221_160605_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NC_020532.1_161031_162519_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NC_020532.1_163165_164125_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NC_020532.1_164419_164623_-	NA	NA|171aa|down_1|NC_020532.1_164801_165314_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NC_020532.1_165655_166396_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NC_020532.1_166409_167381_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NC_020532.1_167377_168139_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NC_020532.1_168151_169183_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NC_020532.1_169399_169759_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NC_020532.1_169932_170958_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NC_020532.1_171343_172594_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NC_020532.1_173040_180216_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_000967365.1_ASM96736v1	NC_020532	Staphylococcus aureus subsp. aureus ST228, complete genome	2	403520-403621	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|70aa|up_9|NC_020532.1_393559_393769_-,NA|128aa|up_7|NC_020532.1_394593_394977_-,NA|33aa|up_1|NC_020532.1_401224_401323_+,NA|221aa|down_1|NC_020532.1_404711_405374_-,NA|179aa|down_7|NC_020532.1_411465_412002_-	NA|70aa|up_9|NC_020532.1_393559_393769_-	NA	NA|194aa|up_8|NC_020532.1_393946_394528_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NC_020532.1_394593_394977_-	NA	NA|209aa|up_6|NC_020532.1_395246_395873_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_5|NC_020532.1_396316_397840_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NC_020532.1_397855_398425_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NC_020532.1_398916_399672_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NC_020532.1_399751_401140_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_1|NC_020532.1_401224_401323_+	NA	NA|440aa|up_0|NC_020532.1_401986_403306_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|319aa|down_0|NC_020532.1_403637_404594_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NC_020532.1_404711_405374_-	NA	NA|136aa|down_2|NC_020532.1_405516_405924_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NC_020532.1_406436_407015_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NC_020532.1_407014_408283_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NC_020532.1_408320_409787_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NC_020532.1_409811_411353_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NC_020532.1_411465_412002_-	NA	NA|235aa|down_8|NC_020532.1_412393_413098_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NC_020532.1_413496_413769_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000967365.1_ASM96736v1	NC_020532	Staphylococcus aureus subsp. aureus ST228, complete genome	3	754648-754730	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|69aa|up_9|NC_020532.1_741261_741468_+,NA|34aa|down_1|NC_020532.1_756385_756487_+,NA|52aa|down_8|NC_020532.1_764333_764489_+	NA|69aa|up_9|NC_020532.1_741261_741468_+	NA	NA|237aa|up_8|NC_020532.1_741555_742266_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NC_020532.1_742249_743254_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NC_020532.1_743727_745668_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NC_020532.1_745937_747821_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NC_020532.1_747832_749614_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NC_020532.1_749835_750813_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NC_020532.1_750805_752320_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NC_020532.1_752559_753618_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NC_020532.1_753956_754499_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NC_020532.1_755377_756295_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NC_020532.1_756385_756487_+	NA	NA|502aa|down_2|NC_020532.1_756564_758070_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NC_020532.1_758410_758911_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NC_020532.1_758930_759797_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NC_020532.1_760597_760996_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NC_020532.1_760958_763064_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NC_020532.1_763181_764153_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NC_020532.1_764333_764489_+	NA	NA|324aa|down_9|NC_020532.1_764527_765499_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_000967365.1_ASM96736v1	NC_020532	Staphylococcus aureus subsp. aureus ST228, complete genome	4	795595-795673	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	795619-795649|795619-795649|795619-795649	NC_020532.1_287502-287472|NC_020532.1_287447-287417|NC_020532.1_1631903-1631933	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_7|NC_020532.1_786471_786576_+,NA|36aa|up_5|NC_020532.1_788008_788116_+,NA	NA|191aa|up_9|NC_020532.1_782912_783485_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NC_020532.1_783898_786430_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NC_020532.1_786471_786576_+	NA	NA|370aa|up_6|NC_020532.1_786744_787855_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NC_020532.1_788008_788116_+	NA	NA|280aa|up_4|NC_020532.1_788263_789103_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NC_020532.1_789276_789927_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NC_020532.1_789923_790160_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NC_020532.1_790428_792414_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NC_020532.1_792421_795268_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NC_020532.1_795931_796864_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NC_020532.1_796869_797709_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NC_020532.1_797716_798202_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NC_020532.1_798209_799649_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NC_020532.1_799715_800651_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NC_020532.1_801595_802507_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NC_020532.1_802503_803499_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NC_020532.1_803609_804554_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NC_020532.1_805117_805705_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NC_020532.1_805947_806850_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_000967365.1_ASM96736v1	NC_020532	Staphylococcus aureus subsp. aureus ST228, complete genome	5	852586-852667	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|126aa|up_3|NC_020532.1_848751_849129_+,NA	NA|180aa|up_9|NC_020532.1_842821_843361_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_8|NC_020532.1_843511_843832_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_7|NC_020532.1_843975_844332_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_6|NC_020532.1_844489_844870_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|362aa|up_5|NC_020532.1_845770_846856_+	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|631aa|up_4|NC_020532.1_846852_848745_+	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|126aa|up_3|NC_020532.1_848751_849129_+	NA	NA|261aa|up_2|NC_020532.1_849279_850062_+	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|244aa|up_1|NC_020532.1_850187_850919_-	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|221aa|up_0|NC_020532.1_851306_851969_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|129aa|down_0|NC_020532.1_853277_853664_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NC_020532.1_853656_853953_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NC_020532.1_854202_855228_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NC_020532.1_855220_855916_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NC_020532.1_855933_856755_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NC_020532.1_857108_857303_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NC_020532.1_857536_858388_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NC_020532.1_858715_859477_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NC_020532.1_859574_860882_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|417aa|down_9|NC_020532.1_860987_862238_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_000967365.1_ASM96736v1	NC_020532	Staphylococcus aureus subsp. aureus ST228, complete genome	6	1327289-1327378	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGGGG	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|78aa|up_9|NC_020532.1_1316393_1316627_+,NA|33aa|up_5|NC_020532.1_1319618_1319717_+,NA|56aa|down_8|NC_020532.1_1340203_1340371_+	NA|78aa|up_9|NC_020532.1_1316393_1316627_+	NA	NA|80aa|up_8|NC_020532.1_1316763_1317003_+	pfam05979, DUF896, Bacterial protein of unknown function (DUF896)	NA|663aa|up_7|NC_020532.1_1317123_1319112_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|81aa|up_6|NC_020532.1_1319389_1319632_+	COG3763, COG3763, Uncharacterized protein conserved in bacteria [Function unknown]	NA|33aa|up_5|NC_020532.1_1319618_1319717_+	NA	NA|156aa|up_4|NC_020532.1_1319810_1320278_+	COG4846, CcdC, Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]	NA|374aa|up_3|NC_020532.1_1320401_1321523_+	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair]	NA|1010aa|up_2|NC_020532.1_1321526_1324556_+	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|121aa|up_1|NC_020532.1_1324626_1324989_-	PRK13954, mscL, large conductance mechanosensitive channel protein MscL	NA|549aa|up_0|NC_020532.1_1325192_1326839_+	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]	NA|902aa|down_0|NC_020532.1_1327729_1330435_+	PRK09277, PRK09277, aconitate hydratase AcnA	NA|156aa|down_1|NC_020532.1_1330614_1331082_+	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|99aa|down_2|NC_020532.1_1331288_1331585_-	COG4841, COG4841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|203aa|down_3|NC_020532.1_1331960_1332569_-	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY	NA|664aa|down_4|NC_020532.1_1332774_1334766_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|801aa|down_5|NC_020532.1_1334765_1337168_+	PRK05561, PRK05561, DNA topoisomerase 4 subunit A	NA|487aa|down_6|NC_020532.1_1337417_1338878_+	pfam01235, Na_Ala_symp, Sodium:alanine symporter family	NA|284aa|down_7|NC_020532.1_1339377_1340229_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|56aa|down_8|NC_020532.1_1340203_1340371_+	NA	NA|403aa|down_9|NC_020532.1_1340363_1341572_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]
GCF_000967365.1_ASM96736v1	NC_020532	Staphylococcus aureus subsp. aureus ST228, complete genome	7	1597421-1597505	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	1597447-1597479|1597447-1597479	NC_020532.1_801153-801185|NC_020532.1_801212-801244	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA,NA	NA|228aa|up_9|NC_020532.1_1586630_1587314_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NC_020532.1_1587557_1587734_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NC_020532.1_1588026_1589373_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NC_020532.1_1589379_1590132_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NC_020532.1_1590133_1591072_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NC_020532.1_1591075_1592215_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NC_020532.1_1592350_1594183_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NC_020532.1_1594251_1594878_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NC_020532.1_1594909_1595887_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NC_020532.1_1595987_1597112_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NC_020532.1_1597677_1599501_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NC_020532.1_1599846_1600098_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NC_020532.1_1600142_1601117_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|734aa|down_3|NC_020532.1_1601173_1603375_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NC_020532.1_1603379_1603841_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NC_020532.1_1603932_1604619_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NC_020532.1_1604658_1605375_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NC_020532.1_1605377_1605731_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NC_020532.1_1605731_1606316_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NC_020532.1_1606305_1606875_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_000967365.1_ASM96736v1	NC_020532	Staphylococcus aureus subsp. aureus ST228, complete genome	8	2156361-2156441	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|126aa|up_2|NC_020532.1_2152223_2152601_-,NA|35aa|down_0|NC_020532.1_2156776_2156881_-,NA|53aa|down_1|NC_020532.1_2157560_2157719_+	NA|313aa|up_9|NC_020532.1_2144938_2145877_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_8|NC_020532.1_2146312_2146978_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_7|NC_020532.1_2147129_2147450_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_6|NC_020532.1_2147451_2148429_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|221aa|up_5|NC_020532.1_2149383_2150046_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|244aa|up_4|NC_020532.1_2150433_2151165_+	pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase	NA|261aa|up_3|NC_020532.1_2151290_2152073_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|126aa|up_2|NC_020532.1_2152223_2152601_-	NA	NA|631aa|up_1|NC_020532.1_2152607_2154500_-	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|362aa|up_0|NC_020532.1_2154496_2155582_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|35aa|down_0|NC_020532.1_2156776_2156881_-	NA	NA|53aa|down_1|NC_020532.1_2157560_2157719_+	NA	NA|286aa|down_2|NC_020532.1_2158376_2159234_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NC_020532.1_2159301_2160084_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NC_020532.1_2160315_2162121_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NC_020532.1_2162801_2164340_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NC_020532.1_2164374_2166507_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NC_020532.1_2166518_2166953_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NC_020532.1_2166952_2168059_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NC_020532.1_2168377_2175823_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_000967365.1_ASM96736v1	NC_020532	Staphylococcus aureus subsp. aureus ST228, complete genome	9	2168682-2168767	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|35aa|up_8|NC_020532.1_2156776_2156881_-,NA|53aa|up_7|NC_020532.1_2157560_2157719_+,NA	NA|362aa|up_9|NC_020532.1_2154496_2155582_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|35aa|up_8|NC_020532.1_2156776_2156881_-	NA	NA|53aa|up_7|NC_020532.1_2157560_2157719_+	NA	NA|286aa|up_6|NC_020532.1_2158376_2159234_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NC_020532.1_2159301_2160084_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NC_020532.1_2160315_2162121_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NC_020532.1_2162801_2164340_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NC_020532.1_2164374_2166507_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NC_020532.1_2166518_2166953_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NC_020532.1_2166952_2168059_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NC_020532.1_2176100_2177456_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NC_020532.1_2177482_2178415_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NC_020532.1_2178416_2179226_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NC_020532.1_2179414_2180323_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NC_020532.1_2186563_2187628_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|158aa|down_5|NC_020532.1_2189541_2190015_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_6|NC_020532.1_2190113_2191457_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_7|NC_020532.1_2191633_2192317_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_8|NC_020532.1_2192335_2193523_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|172aa|down_9|NC_020532.1_2193566_2194082_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
GCF_000967365.1_ASM96736v1	NC_020532	Staphylococcus aureus subsp. aureus ST228, complete genome	10	2276725-2276805	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	15	2276750-2276780|2276750-2276780|2276750-2276780|2276750-2276780|2276750-2276780|2276750-2276780|2276750-2276780|2276750-2276780|2276750-2276780|2276750-2276780|2276750-2276780|2276750-2276780|2276750-2276780|2276750-2276780|2276750-2276780	NC_020532.1_808397-808427|NC_020532.1_808453-808483|NC_020532.1_808509-808539|NC_020532.1_65763-65793|NC_020532.1_363287-363257|NC_020532.1_629334-629304|NC_020532.1_808564-808594|NC_020532.1_852921-852951|NC_020532.1_1121268-1121238|NC_020532.1_1327310-1327280|NC_020532.1_1415630-1415660|NC_020532.1_1612115-1612085|NC_020532.1_1929435-1929465|NC_020532.1_2265949-2265979|NC_020532.1_2441327-2441357	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,RT,WYL	NA|55aa|up_9|NC_020532.1_2267258_2267423_+,NA|106aa|up_8|NC_020532.1_2267667_2267985_+,NA|84aa|up_5|NC_020532.1_2273106_2273358_+,NA|62aa|up_0|NC_020532.1_2276497_2276683_+,NA	NA|55aa|up_9|NC_020532.1_2267258_2267423_+	NA	NA|106aa|up_8|NC_020532.1_2267667_2267985_+	NA	NA|1056aa|up_7|NC_020532.1_2268168_2271336_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NC_020532.1_2271452_2272718_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NC_020532.1_2273106_2273358_+	NA	NA|255aa|up_4|NC_020532.1_2273349_2274114_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NC_020532.1_2274275_2274716_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NC_020532.1_2274708_2275920_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NC_020532.1_2276021_2276372_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NC_020532.1_2276497_2276683_+	NA	NA|341aa|down_0|NC_020532.1_2276948_2277971_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NC_020532.1_2277990_2278590_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NC_020532.1_2278596_2278830_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NC_020532.1_2278835_2279282_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NC_020532.1_2279295_2279781_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NC_020532.1_2279777_2281037_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NC_020532.1_2281099_2281594_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NC_020532.1_2281595_2282102_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NC_020532.1_2282132_2283137_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NC_020532.1_2283306_2283912_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
