The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009042	Vibrio cholerae O1 biovar El Tor strain FJ147 chromosome I, complete sequence	3045476	657633	729609	3045476	transposase,protease,integrase,tRNA	Bacillus_phage(20.0%)	54	651649:651664	712990:713005
651649:651664	attL	ATTTTGGTGGTTGATC	NA	NA	NA	NA
WP_000146472.1|657633_658821_+|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000898882.1|658888_660334_-	serine-type D-Ala-D-Ala carboxypeptidase	NA	NA	NA	NA	NA
WP_001044323.1|660431_661457_-	porin OmpU	NA	NA	NA	NA	NA
WP_001883448.1|662011_662485_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_001054291.1|662561_662858_-	ribosome assembly RNA-binding protein YhbY	NA	NA	NA	NA	NA
WP_000043220.1|662977_663607_+	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA	NA
WP_001107450.1|663716_665663_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	A0A0P0BXI2	Ostreococcus_lucimarinus_virus	44.4	2.3e-120
WP_000913082.1|665729_666566_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.6	3.2e-18
WP_001281065.1|666591_667932_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_000495557.1|668188_668524_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000147148.1|668954_669410_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_000031601.1|669428_670916_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000192207.1|670940_673637_+	translation initiation factor IF-2	NA	NA	NA	NA	NA
WP_001123656.1|673738_674137_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000124044.1|674136_675075_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000055654.1|675216_675486_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_000462070.1|675848_677978_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_001883460.1|678093_679005_+	lipoprotein NlpI	NA	NA	NA	NA	NA
WP_000887847.1|679103_679511_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000981941.1|679557_680895_+	sodium-coupled multidrug efflux MATE transporter VcrM	NA	NA	NA	NA	NA
WP_000872504.1|680947_681826_-	U32 family peptidase	NA	NA	NA	NA	NA
WP_000421327.1|681837_682851_-	U32 family peptidase	NA	NA	NA	NA	NA
WP_045788694.1|682958_685013_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA	NA
WP_000932672.1|685245_685773_+	SCP2 domain-containing protein	NA	NA	NA	NA	NA
WP_000908540.1|685756_686260_+	N-acetyltransferase	NA	A0A1P8CWJ6	Bacillus_phage	32.2	1.7e-19
WP_000953212.1|686370_686778_+	DNA polymerase III subunit psi	NA	NA	NA	NA	NA
WP_000214238.1|686774_687224_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_000160066.1|687212_689270_-	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	34.3	6.9e-14
WP_000127615.1|690010_690199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000211147.1|690344_692363_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_001218618.1|692492_693734_-|integrase	integrase family protein	integrase	A0A291AWU1	Escherichia_phage	39.8	1.3e-76
WP_001995600.1|693735_694005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000497807.1|694007_694982_-	ParM/StbA family protein	NA	NA	NA	NA	NA
WP_000348524.1|695446_695890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985631.1|698063_701042_+|transposase	Tn3 family transposase	transposase	NA	NA	NA	NA
WP_001120888.1|701459_702953_+|transposase	IS91-like element ISVsa3 family transposase	transposase	NA	NA	NA	NA
WP_001447541.1|702983_703868_+	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
WP_000214119.1|704084_705299_+	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	4.2e-19
WP_001255015.1|705326_705632_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000480968.1|706254_707091_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_001082316.1|707090_707894_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	Q75ZG1	Hepacivirus	34.3	3.8e-24
WP_001043260.1|707954_708770_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA	NA
WP_001122813.1|710584_711796_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	51.4	4.2e-51
WP_000116661.1|712786_713236_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A218MND2	uncultured_virus	57.1	4.1e-36
712990:713005	attR	GATCAACCACCAAAAT	NA	NA	NA	NA
WP_000182836.1|713234_713492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000196209.1|713875_714781_+	DNA polymerase III subunit epsilon	NA	A0A2H4P6W5	Pseudomonas_phage	26.4	3.1e-06
WP_000284114.1|714868_715168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000180270.1|715485_716406_+	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_000653856.1|716423_717224_+	DUF1819 family protein	NA	NA	NA	NA	NA
WP_001115853.1|717207_717756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000152592.1|717768_721458_+	BREX system P-loop protein BrxC	NA	NA	NA	NA	NA
WP_000779609.1|721462_725203_+	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA	NA
WP_000567536.1|725215_727519_+	PglZ domain-containing protein	NA	NA	NA	NA	NA
WP_000279702.1|727557_729609_+|protease	protease Lon-related BREX system protein BrxL	protease	NA	NA	NA	NA
>prophage 2
NZ_CP009042	Vibrio cholerae O1 biovar El Tor strain FJ147 chromosome I, complete sequence	3045476	884635	891828	3045476		Faustovirus(16.67%)	9	NA	NA
WP_000775253.1|884635_885850_+	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
WP_000331703.1|885886_886270_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000301571.1|886330_886654_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_001105747.1|886702_887218_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_001196560.1|887241_889092_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001124187.1|889105_889444_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000872176.1|889492_889687_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000107237.1|889906_891196_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_001162850.1|891399_891828_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
>prophage 3
NZ_CP009042	Vibrio cholerae O1 biovar El Tor strain FJ147 chromosome I, complete sequence	3045476	1647438	1662653	3045476	coat	Vibrio_phage(58.82%)	20	NA	NA
WP_000053920.1|1647438_1647663_-	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
WP_001911551.1|1647756_1648107_-	hypothetical protein	NA	U5TMH5	Satellite_phage	100.0	1.0e-63
WP_000743997.1|1648108_1649188_-	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000693566.1|1649313_1649652_+	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000593519.1|1650253_1650628_-	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	100.0	5.9e-65
WP_001881225.1|1650624_1651401_-	cholera enterotoxin catalytic subunit CtxA	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
WP_000021616.1|1651499_1652699_-	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
WP_000979342.1|1652695_1652989_-	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_001268534.1|1652985_1654173_-|coat	minor coat protein pIII	coat	A0A142I701	Vibrio_phage	100.0	1.4e-200
WP_000493022.1|1654279_1654528_-	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001911548.1|1654663_1655023_-	hypothetical protein	NA	A0A0N9HE73	Vibrio_phage	100.0	4.4e-65
WP_000743997.1|1655024_1656104_-	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000693566.1|1656229_1656568_+	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000170634.1|1657057_1657642_-	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_001161489.1|1657634_1657802_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_001052672.1|1657879_1658572_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000512956.1|1658701_1658971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001881266.1|1658990_1660559_-	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_000005769.1|1660735_1661287_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001161489.1|1662485_1662653_-	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
>prophage 4
NZ_CP009042	Vibrio cholerae O1 biovar El Tor strain FJ147 chromosome I, complete sequence	3045476	2506071	2512688	3045476		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000864130.1|2506071_2506542_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
WP_045788700.1|2506806_2507916_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	8.8e-64
WP_000493874.1|2507956_2508610_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001131994.1|2508614_2509718_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000543544.1|2509743_2510193_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_000366574.1|2510292_2511543_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000210573.1|2511554_2512688_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
