assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000961015.1_ASM96101v1	NZ_CP009907	Lactobacillus helveticus strain KLDS1.8701 chromosome, complete genome	1	735863-736129	1	CRISPRCasFinder	no	cas14j	cas14j,cas3,Cas14u_CAS-V,csa3,cas2,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,DinG,WYL,RT	Unclear	GTTTTCTCCACGTAAGTGGAGGT	23	0	0	NA	NA	NA	4	4	TypeV	cas14j,cas3,Cas14u_CAS-V,csa3,cas2,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,DinG,WYL,RT	NA|326aa|up_5|NZ_CP009907.1_726414_727392_-,NA|94aa|down_4|NZ_CP009907.1_746044_746326_+,NA|79aa|down_6|NZ_CP009907.1_749833_750070_+,NA|86aa|down_8|NZ_CP009907.1_750915_751173_-	cas14j|410aa|up_9|NZ_CP009907.1_723010_724240_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|55aa|up_8|NZ_CP009907.1_724392_724557_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|131aa|up_7|NZ_CP009907.1_724510_724903_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|438aa|up_6|NZ_CP009907.1_725046_726360_+	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|326aa|up_5|NZ_CP009907.1_726414_727392_-	NA	NA|505aa|up_4|NZ_CP009907.1_727480_728995_-	cd09604, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain	NA|326aa|up_3|NZ_CP009907.1_729132_730110_+	pfam17312, Helveticin_J, Bacteriocin helveticin-J	NA|286aa|up_2|NZ_CP009907.1_730574_731432_+	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|105aa|up_1|NZ_CP009907.1_731489_731804_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|294aa|up_0|NZ_CP009907.1_731821_732703_+	pfam01145, Band_7, SPFH domain / Band 7 family	NA|469aa|down_0|NZ_CP009907.1_736969_738376_+	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|595aa|down_1|NZ_CP009907.1_738697_740482_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|768aa|down_2|NZ_CP009907.1_740492_742796_+	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|493aa|down_3|NZ_CP009907.1_742809_744288_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|94aa|down_4|NZ_CP009907.1_746044_746326_+	NA	NA|125aa|down_5|NZ_CP009907.1_749261_749636_+	pfam10711, DUF2513, Hypothetical protein (DUF2513)	NA|79aa|down_6|NZ_CP009907.1_749833_750070_+	NA	NA|170aa|down_7|NZ_CP009907.1_750409_750919_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|86aa|down_8|NZ_CP009907.1_750915_751173_-	NA	NA|153aa|down_9|NZ_CP009907.1_751359_751818_-	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region
GCF_000961015.1_ASM96101v1	NZ_CP009907	Lactobacillus helveticus strain KLDS1.8701 chromosome, complete genome	2	890302-891796	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	cas14j,cas3,Cas14u_CAS-V,csa3,cas2,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,DinG,WYL,RT	Type I-E	GTATTCTCCACGTATGTGGAGGTGATCC,GTATTCTCCACGTATGTGGAGGTGATCC,GTATTCTCCACGTATGTGGAGGTGATCC	28,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	24,24,24	24	TypeI-E	cas14j,cas3,Cas14u_CAS-V,csa3,cas2,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,DinG,WYL,RT	NA|169aa|up_9|NZ_CP009907.1_872957_873464_-,NA|140aa|up_4|NZ_CP009907.1_885294_885714_-,NA|168aa|up_3|NZ_CP009907.1_886194_886698_+,NA	NA|169aa|up_9|NZ_CP009907.1_872957_873464_-	NA	NA|393aa|up_8|NZ_CP009907.1_873694_874873_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|485aa|up_7|NZ_CP009907.1_878103_879558_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|498aa|up_6|NZ_CP009907.1_879544_881038_+	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S	NA|966aa|up_5|NZ_CP009907.1_881052_883950_+	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	NA|140aa|up_4|NZ_CP009907.1_885294_885714_-	NA	NA|168aa|up_3|NZ_CP009907.1_886194_886698_+	NA	NA|207aa|up_2|NZ_CP009907.1_887092_887713_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|134aa|up_1|NZ_CP009907.1_888103_888505_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|70aa|up_0|NZ_CP009907.1_888465_888675_-	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	cas3|914aa|down_0|NZ_CP009907.1_891864_894606_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|242aa|down_1|NZ_CP009907.1_894830_895556_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas8e|314aa|down_2|NZ_CP009907.1_896437_897379_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|214aa|down_3|NZ_CP009907.1_897397_898039_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|371aa|down_4|NZ_CP009907.1_898057_899170_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|down_5|NZ_CP009907.1_899150_899876_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|218aa|down_6|NZ_CP009907.1_899889_900543_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|315aa|down_7|NZ_CP009907.1_900544_901489_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|294aa|down_8|NZ_CP009907.1_901488_902370_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|942aa|down_9|NZ_CP009907.1_905340_908166_+	pfam17966, Mub_B2, Mub B2-like domain
GCF_000961015.1_ASM96101v1	NZ_CP009907	Lactobacillus helveticus strain KLDS1.8701 chromosome, complete genome	3	902441-903200	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh	cas14j,cas3,Cas14u_CAS-V,csa3,cas2,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,DinG,WYL,RT	Type I-E	GTATTCTCCACGTATGTGGAGGTGATCC,GTATTCTCCACGTATGTGGAGGTGATCC,GTATTCTCCACGTATGTGGAGGTGATCC	28,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	12,12,11	12	TypeI-E	cas14j,cas3,Cas14u_CAS-V,csa3,cas2,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,DinG,WYL,RT	NA,NA|59aa|down_1|NZ_CP009907.1_908308_908485_+	NA|70aa|up_9|NZ_CP009907.1_888465_888675_-	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	cas3|914aa|up_8|NZ_CP009907.1_891864_894606_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|242aa|up_7|NZ_CP009907.1_894830_895556_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas8e|314aa|up_6|NZ_CP009907.1_896437_897379_+	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cse2gr11|214aa|up_5|NZ_CP009907.1_897397_898039_+	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas7|371aa|up_4|NZ_CP009907.1_898057_899170_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP009907.1_899150_899876_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|218aa|up_2|NZ_CP009907.1_899889_900543_+	pfam08798, CRISPR_assoc, CRISPR associated protein	cas1|315aa|up_1|NZ_CP009907.1_900544_901489_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	DEDDh|294aa|up_0|NZ_CP009907.1_901488_902370_+	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	NA|942aa|down_0|NZ_CP009907.1_905340_908166_+	pfam17966, Mub_B2, Mub B2-like domain	NA|59aa|down_1|NZ_CP009907.1_908308_908485_+	NA	NA|117aa|down_2|NZ_CP009907.1_908478_908829_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|77aa|down_3|NZ_CP009907.1_908868_909099_+	pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain	NA|446aa|down_4|NZ_CP009907.1_909073_910411_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|411aa|down_5|NZ_CP009907.1_914370_915603_+	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|410aa|down_6|NZ_CP009907.1_915878_917108_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|420aa|down_7|NZ_CP009907.1_917345_918605_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|393aa|down_8|NZ_CP009907.1_918840_920019_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|874aa|down_9|NZ_CP009907.1_920180_922802_-	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp
GCF_000961015.1_ASM96101v1	NZ_CP009907	Lactobacillus helveticus strain KLDS1.8701 chromosome, complete genome	4	1799161-1799340	3	PILER-CR	no	cas14j	cas14j,cas3,Cas14u_CAS-V,csa3,cas2,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,DinG,WYL,RT	Unclear	ATGTGGGATTTGAACCCACGC	21	0	0	NA	NA	NA	2	2	TypeV	cas14j,cas3,Cas14u_CAS-V,csa3,cas2,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,DinG,WYL,RT	NA|224aa|up_6|NZ_CP009907.1_1787197_1787869_-,NA|149aa|down_1|NZ_CP009907.1_1801339_1801786_-,NA|114aa|down_8|NZ_CP009907.1_1811796_1812138_-	NA|154aa|up_9|NZ_CP009907.1_1785051_1785513_-	pfam12802, MarR_2, MarR family	NA|273aa|up_8|NZ_CP009907.1_1785654_1786473_+	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold	NA|223aa|up_7|NZ_CP009907.1_1786515_1787184_-	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|224aa|up_6|NZ_CP009907.1_1787197_1787869_-	NA	NA|541aa|up_5|NZ_CP009907.1_1788145_1789768_-	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|361aa|up_4|NZ_CP009907.1_1789872_1790955_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|490aa|up_3|NZ_CP009907.1_1792309_1793779_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|177aa|up_2|NZ_CP009907.1_1794070_1794601_+	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|443aa|up_1|NZ_CP009907.1_1794613_1795942_+	PRK10720, PRK10720, uracil transporter; Provisional	cas14j|410aa|up_0|NZ_CP009907.1_1796863_1798093_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|167aa|down_0|NZ_CP009907.1_1799507_1800008_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|149aa|down_1|NZ_CP009907.1_1801339_1801786_-	NA	NA|68aa|down_2|NZ_CP009907.1_1801996_1802200_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|264aa|down_3|NZ_CP009907.1_1804236_1805028_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|393aa|down_4|NZ_CP009907.1_1805048_1806227_+	PRK08068, PRK08068, transaminase; Reviewed	NA|321aa|down_5|NZ_CP009907.1_1806245_1807208_+	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|451aa|down_6|NZ_CP009907.1_1808665_1810018_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|459aa|down_7|NZ_CP009907.1_1810383_1811760_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|114aa|down_8|NZ_CP009907.1_1811796_1812138_-	NA	NA|235aa|down_9|NZ_CP009907.1_1812320_1813025_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins
