assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000959445.1_ASM95944v1	NZ_CP009631	Burkholderia vietnamiensis LMG 10929 chromosome I, complete sequence	1	18488-18584	1	CRISPRCasFinder	no		cas3,WYL,DinG,PD-DExK,DEDDh,csa3	Orphan	CCGGTCAACGCGCCGGCCGGGTTACCGC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DinG,PD-DExK,DEDDh,csa3	NA,NA	NA|57aa|up_9|NZ_CP009631.1_9890_10061_-	COG1773, COG1773, Rubredoxin [Energy production and conversion]	NA|289aa|up_8|NZ_CP009631.1_10316_11183_+	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1	NA|547aa|up_7|NZ_CP009631.1_11331_12972_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|98aa|up_6|NZ_CP009631.1_13018_13312_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|170aa|up_5|NZ_CP009631.1_13686_14196_-	cd07824, SRPBCC_6, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|211aa|up_4|NZ_CP009631.1_14219_14852_-	pfam17131, LolA_like, Outer membrane lipoprotein-sorting protein	NA|140aa|up_3|NZ_CP009631.1_14848_15268_-	cd04223, N2OR_C, The C-terminal cupredoxin domain of Nitrous-oxide reductase	NA|264aa|up_2|NZ_CP009631.1_15299_16091_-	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]	NA|172aa|up_1|NZ_CP009631.1_16090_16606_-	PRK12511, PRK12511, RNA polymerase sigma factor; Provisional	NA|120aa|up_0|NZ_CP009631.1_16655_17015_-	COG4315, COG4315, Uncharacterized protein conserved in bacteria [Function unknown]	NA|216aa|down_0|NZ_CP009631.1_19729_20377_+	COG2964, COG2964, Uncharacterized protein conserved in bacteria [Function unknown]	NA|244aa|down_1|NZ_CP009631.1_20523_21255_+	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif	NA|480aa|down_2|NZ_CP009631.1_21367_22807_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|263aa|down_3|NZ_CP009631.1_23092_23881_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|612aa|down_4|NZ_CP009631.1_24047_25883_-	COG2939, COG2939, Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]	NA|697aa|down_5|NZ_CP009631.1_26491_28582_-	pfam10605, 3HBOH, 3HB-oligomer hydrolase (3HBOH)	NA|119aa|down_6|NZ_CP009631.1_28733_29090_-	pfam04972, BON, BON domain	NA|478aa|down_7|NZ_CP009631.1_29558_30992_+	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold	NA|213aa|down_8|NZ_CP009631.1_31086_31725_+	cd03022, DsbA_HCCA_Iso, DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway	NA|315aa|down_9|NZ_CP009631.1_31794_32739_+	cd08463, PBP2_DntR_like_4, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold
GCF_000959445.1_ASM95944v1	NZ_CP009631	Burkholderia vietnamiensis LMG 10929 chromosome I, complete sequence	2	980997-981127	2	CRISPRCasFinder	no		cas3,WYL,DinG,PD-DExK,DEDDh,csa3	Orphan	GTCGCATCCGACCCATCCATCGC	23	0	0	NA	NA	NA	2	2	Orphan	cas3,WYL,DinG,PD-DExK,DEDDh,csa3	NA|75aa|up_1|NZ_CP009631.1_979062_979287_+,NA	NA|656aa|up_9|NZ_CP009631.1_969294_971262_+	PRK06945, flgK, flagellar hook-associated protein FlgK; Validated	NA|414aa|up_8|NZ_CP009631.1_971284_972526_+	PRK08870, flgL, flagellar hook-associated protein FlgL; Reviewed	NA|436aa|up_7|NZ_CP009631.1_972786_974094_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|295aa|up_6|NZ_CP009631.1_974121_975006_-	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|205aa|up_5|NZ_CP009631.1_975102_975717_+	pfam02417, Chromate_transp, Chromate transporter	NA|176aa|up_4|NZ_CP009631.1_975713_976241_+	pfam02417, Chromate_transp, Chromate transporter	NA|291aa|up_3|NZ_CP009631.1_976321_977194_+	pfam06912, DUF1275, Protein of unknown function (DUF1275)	NA|374aa|up_2|NZ_CP009631.1_977610_978732_+	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|75aa|up_1|NZ_CP009631.1_979062_979287_+	NA	NA|452aa|up_0|NZ_CP009631.1_979527_980883_+	PRK06116, PRK06116, glutathione reductase; Validated	NA|226aa|down_0|NZ_CP009631.1_981509_982187_+	COG1462, CsgG, Uncharacterized protein involved in formation of curli polymers [Cell envelope biogenesis, outer membrane]	NA|152aa|down_1|NZ_CP009631.1_982243_982699_+	COG4259, COG4259, Uncharacterized protein conserved in bacteria [Function unknown]	NA|225aa|down_2|NZ_CP009631.1_982709_983384_+	pfam05643, DUF799, Putative bacterial lipoprotein (DUF799)	NA|434aa|down_3|NZ_CP009631.1_983509_984811_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|435aa|down_4|NZ_CP009631.1_984833_986138_-	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|531aa|down_5|NZ_CP009631.1_986250_987843_-	pfam11336, DUF3138, Protein of unknown function (DUF3138)	NA|280aa|down_6|NZ_CP009631.1_987941_988781_-	PRK10592, PRK10592, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|329aa|down_7|NZ_CP009631.1_988777_989764_-	PRK10683, PRK10683, putrescine transporter subunit: membrane component of ABC superfamily; Provisional	NA|385aa|down_8|NZ_CP009631.1_989774_990929_-	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG	NA|372aa|down_9|NZ_CP009631.1_991119_992235_-	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold
GCF_000959445.1_ASM95944v1	NZ_CP009631	Burkholderia vietnamiensis LMG 10929 chromosome I, complete sequence	3	2578335-2578517	1	PILER-CR	no		cas3,WYL,DinG,PD-DExK,DEDDh,csa3	Orphan	AGCCCGCTCGCGCCGGTC----------------------------ACG	49	0	0	NA	NA	NA	2	2	Orphan	cas3,WYL,DinG,PD-DExK,DEDDh,csa3	NA|75aa|up_1|NZ_CP009631.1_2575437_2575662_-,NA	NA|329aa|up_9|NZ_CP009631.1_2567560_2568547_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|455aa|up_8|NZ_CP009631.1_2568539_2569904_-	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|425aa|up_7|NZ_CP009631.1_2569907_2571182_-	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|444aa|up_6|NZ_CP009631.1_2571242_2572574_-	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]	NA|315aa|up_5|NZ_CP009631.1_2572638_2573583_-	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|165aa|up_4|NZ_CP009631.1_2573658_2574153_-	pfam07811, TadE, TadE-like protein	NA|167aa|up_3|NZ_CP009631.1_2574149_2574650_-	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|76aa|up_2|NZ_CP009631.1_2574749_2574977_-	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]	NA|75aa|up_1|NZ_CP009631.1_2575437_2575662_-	NA	NA|530aa|up_0|NZ_CP009631.1_2575638_2577228_+	pfam15984, Collagen_mid, Bacterial collagen, middle region	NA|562aa|down_0|NZ_CP009631.1_2578766_2580452_+	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|154aa|down_1|NZ_CP009631.1_2580618_2581080_+	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147)	NA|138aa|down_2|NZ_CP009631.1_2581180_2581594_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|366aa|down_3|NZ_CP009631.1_2581736_2582834_-	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|477aa|down_4|NZ_CP009631.1_2582933_2584364_-	PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated	NA|426aa|down_5|NZ_CP009631.1_2584445_2585723_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|955aa|down_6|NZ_CP009631.1_2585858_2588723_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|609aa|down_7|NZ_CP009631.1_2589039_2590866_-	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|164aa|down_8|NZ_CP009631.1_2591201_2591693_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|502aa|down_9|NZ_CP009631.1_2591780_2593286_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family
GCF_000959445.1_ASM95944v1	NZ_CP009632	Burkholderia vietnamiensis LMG 10929 chromosome III, complete sequence	1	475819-475906	1	CRISPRCasFinder	no		csa3	Orphan	GCCCGACCTGCGACGGCGATGCG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DinG,PD-DExK,DEDDh,csa3	NA,NA	NA|103aa|up_9|NZ_CP009632.1_465148_465457_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|537aa|up_8|NZ_CP009632.1_465994_467605_-	COG2192, COG2192, Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]	NA|356aa|up_7|NZ_CP009632.1_467636_468704_-	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism]	NA|358aa|up_6|NZ_CP009632.1_469384_470458_+	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion]	NA|619aa|up_5|NZ_CP009632.1_470515_472372_+	pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase	NA|237aa|up_4|NZ_CP009632.1_472490_473201_+	TIGR02125, CytB-hydogenase, Ni/Fe-hydrogenase, b-type cytochrome subunit	NA|226aa|up_3|NZ_CP009632.1_473208_473886_+	TIGR00140, Hydrogenase_expression/formation_protein_HupD, hydrogenase expression/formation protein	NA|117aa|up_2|NZ_CP009632.1_473876_474227_+	pfam01455, HupF_HypC, HupF/HypC family	NA|178aa|up_1|NZ_CP009632.1_474223_474757_+	cd02965, HyaE, HyaE family; HyaE is also called HupG and HoxO	NA|288aa|up_0|NZ_CP009632.1_474774_475638_+	pfam04809, HupH_C, HupH hydrogenase expression protein, C-terminal conserved region	NA|418aa|down_0|NZ_CP009632.1_476415_477669_+	COG3259, FrhA, Coenzyme F420-reducing hydrogenase, alpha subunit [Energy production and conversion]	NA|116aa|down_1|NZ_CP009632.1_477656_478004_+	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA	NA|346aa|down_2|NZ_CP009632.1_478033_479071_+	PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB; Provisional	NA|392aa|down_3|NZ_CP009632.1_479067_480243_+	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|86aa|down_4|NZ_CP009632.1_480233_480491_+	pfam01455, HupF_HypC, HupF/HypC family	NA|379aa|down_5|NZ_CP009632.1_480487_481624_+	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional	NA|359aa|down_6|NZ_CP009632.1_481620_482697_+	cd02197, HypE, HypE (Hydrogenase expression/formation protein)	NA|501aa|down_7|NZ_CP009632.1_482817_484320_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|346aa|down_8|NZ_CP009632.1_484316_485354_+	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion]	NA|486aa|down_9|NZ_CP009632.1_485362_486820_+	NF033181, NiFeSe_hydrog, nickel-dependent hydrogenase large subunit
GCF_000959445.1_ASM95944v1	NZ_CP009632	Burkholderia vietnamiensis LMG 10929 chromosome III, complete sequence	2	675689-676040	1	PILER-CR	no		csa3	Orphan	GAGAGGCCCGTGGAGAGCGAACTCACGCCGGTCGACAGCGAGCTGGCCGTCGTCGACGTCGAGG	64	3	5	675753-675784|675849-675883|675849-675883|675849-675883|675948-675979	NZ_CP009632.1_677190-677221|NZ_CP009632.1_675078-675112|NZ_CP009632.1_675366-675400|NZ_CP009632.1_678720-678754|NZ_CP009632.1_677190-677221	NA	3	3	Orphan	cas3,WYL,DinG,PD-DExK,DEDDh,csa3	NA|79aa|up_9|NZ_CP009632.1_662771_663008_-,NA|104aa|up_7|NZ_CP009632.1_665041_665353_-,NA|116aa|up_6|NZ_CP009632.1_665390_665738_-,NA|205aa|up_3|NZ_CP009632.1_667746_668361_-,NA|158aa|down_0|NZ_CP009632.1_680754_681228_-,NA|73aa|down_2|NZ_CP009632.1_682163_682382_+	NA|79aa|up_9|NZ_CP009632.1_662771_663008_-	NA	NA|623aa|up_8|NZ_CP009632.1_663128_664997_-	sd00006, TPR, Tetratricopeptide repeat	NA|104aa|up_7|NZ_CP009632.1_665041_665353_-	NA	NA|116aa|up_6|NZ_CP009632.1_665390_665738_-	NA	NA|278aa|up_5|NZ_CP009632.1_665751_666585_-	TIGR02925, hypothetical_protein_Nmul_A0241, peptidyl-prolyl cis-trans isomerase, EpsD family	NA|381aa|up_4|NZ_CP009632.1_666607_667750_-	pfam10933, DUF2827, Protein of unknown function (DUF2827)	NA|205aa|up_3|NZ_CP009632.1_667746_668361_-	NA	NA|374aa|up_2|NZ_CP009632.1_668369_669491_-	pfam10933, DUF2827, Protein of unknown function (DUF2827)	NA|378aa|up_1|NZ_CP009632.1_669487_670621_-	pfam10933, DUF2827, Protein of unknown function (DUF2827)	NA|232aa|up_0|NZ_CP009632.1_670809_671505_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|158aa|down_0|NZ_CP009632.1_680754_681228_-	NA	NA|236aa|down_1|NZ_CP009632.1_681272_681980_-	pfam00563, EAL, EAL domain	NA|73aa|down_2|NZ_CP009632.1_682163_682382_+	NA	NA|208aa|down_3|NZ_CP009632.1_682482_683106_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|458aa|down_4|NZ_CP009632.1_683149_684523_+	pfam05637, Glyco_transf_34, galactosyl transferase GMA12/MNN10 family	NA|471aa|down_5|NZ_CP009632.1_684495_685908_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|79aa|down_6|NZ_CP009632.1_686644_686881_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|281aa|down_7|NZ_CP009632.1_687165_688008_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|197aa|down_8|NZ_CP009632.1_689717_690308_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|258aa|down_9|NZ_CP009632.1_690784_691558_-	PRK09183, PRK09183, transposase/IS protein; Provisional
GCF_000959445.1_ASM95944v1	NZ_CP009632	Burkholderia vietnamiensis LMG 10929 chromosome III, complete sequence	3	677318-677669	2	PILER-CR	no		csa3	Orphan	GAGAGGCCCGTGGAGAGCGAACTCACGCCGGTCGACAGCGAGCTGGCCGTCGTCGACGTCGAGG	64	3	5	677382-677413|677478-677512|677478-677512|677478-677512|677577-677608	NZ_CP009632.1_677190-677221|NZ_CP009632.1_675078-675112|NZ_CP009632.1_675366-675400|NZ_CP009632.1_678720-678754|NZ_CP009632.1_677190-677221	NA	3	3	Orphan	cas3,WYL,DinG,PD-DExK,DEDDh,csa3	NA|79aa|up_9|NZ_CP009632.1_662771_663008_-,NA|104aa|up_7|NZ_CP009632.1_665041_665353_-,NA|116aa|up_6|NZ_CP009632.1_665390_665738_-,NA|205aa|up_3|NZ_CP009632.1_667746_668361_-,NA|158aa|down_0|NZ_CP009632.1_680754_681228_-,NA|73aa|down_2|NZ_CP009632.1_682163_682382_+	NA|79aa|up_9|NZ_CP009632.1_662771_663008_-	NA	NA|623aa|up_8|NZ_CP009632.1_663128_664997_-	sd00006, TPR, Tetratricopeptide repeat	NA|104aa|up_7|NZ_CP009632.1_665041_665353_-	NA	NA|116aa|up_6|NZ_CP009632.1_665390_665738_-	NA	NA|278aa|up_5|NZ_CP009632.1_665751_666585_-	TIGR02925, hypothetical_protein_Nmul_A0241, peptidyl-prolyl cis-trans isomerase, EpsD family	NA|381aa|up_4|NZ_CP009632.1_666607_667750_-	pfam10933, DUF2827, Protein of unknown function (DUF2827)	NA|205aa|up_3|NZ_CP009632.1_667746_668361_-	NA	NA|374aa|up_2|NZ_CP009632.1_668369_669491_-	pfam10933, DUF2827, Protein of unknown function (DUF2827)	NA|378aa|up_1|NZ_CP009632.1_669487_670621_-	pfam10933, DUF2827, Protein of unknown function (DUF2827)	NA|232aa|up_0|NZ_CP009632.1_670809_671505_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|158aa|down_0|NZ_CP009632.1_680754_681228_-	NA	NA|236aa|down_1|NZ_CP009632.1_681272_681980_-	pfam00563, EAL, EAL domain	NA|73aa|down_2|NZ_CP009632.1_682163_682382_+	NA	NA|208aa|down_3|NZ_CP009632.1_682482_683106_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|458aa|down_4|NZ_CP009632.1_683149_684523_+	pfam05637, Glyco_transf_34, galactosyl transferase GMA12/MNN10 family	NA|471aa|down_5|NZ_CP009632.1_684495_685908_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|79aa|down_6|NZ_CP009632.1_686644_686881_-	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|281aa|down_7|NZ_CP009632.1_687165_688008_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|197aa|down_8|NZ_CP009632.1_689717_690308_+	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|258aa|down_9|NZ_CP009632.1_690784_691558_-	PRK09183, PRK09183, transposase/IS protein; Provisional
