The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011045	Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid pCI2, complete sequence	49401	0	7441	49401		Mycobacterium_phage(100.0%)	10	NA	NA
WP_158385436.1|27_498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045530864.1|670_991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045530866.1|1388_2291_+	DUF1738 domain-containing protein	NA	NA	NA	NA	NA
WP_158385430.1|2765_2927_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045530938.1|3331_3709_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_045530868.1|3711_4233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045530870.1|4229_5003_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_144407240.1|5028_5409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052663291.1|5485_6736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052663292.1|6952_7441_+	hypothetical protein	NA	A0A2P1N3E9	Mycobacterium_phage	37.8	6.7e-08
>prophage 2
NZ_CP011045	Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid pCI2, complete sequence	49401	15560	16460	49401		Streptomyces_phage(100.0%)	1	NA	NA
WP_052663295.1|15560_16460_-	C40 family peptidase	NA	A0A2L1IVP0	Streptomyces_phage	52.9	2.5e-24
>prophage 3
NZ_CP011045	Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid pCI2, complete sequence	49401	33101	38809	49401		Mycobacterium_phage(40.0%)	9	NA	NA
WP_052663296.1|33101_33797_+	hypothetical protein	NA	Q857E4	Mycobacterium_phage	50.0	3.4e-05
WP_045530911.1|33947_34565_+	ParA family protein	NA	A0A0N7E4H5	Mycobacterium_phage	33.7	6.9e-18
WP_045530913.1|34561_34906_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080939407.1|34956_35688_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_168371653.1|35768_35918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080939408.1|35914_36271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045530914.1|36382_36730_-	Lsr2 family protein	NA	A0A160DF84	Gordonia_phage	34.5	7.3e-09
WP_080939409.1|37184_38462_-	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	33.8	1.3e-47
WP_080939410.1|38578_38809_+	helix-turn-helix transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	39.3	1.5e-05
>prophage 4
NZ_CP011045	Clavibacter michiganensis subsp. insidiosus strain R1-1 plasmid pCI2, complete sequence	49401	43122	47083	49401		Mycobacterium_phage(33.33%)	5	NA	NA
WP_045530920.1|43122_43713_-	hypothetical protein	NA	A0A068F3M6	Mycobacterium_phage	28.9	1.2e-06
WP_080939413.1|44170_44365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_045530922.1|44606_45209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045530924.1|45551_45902_-	Lsr2 family protein	NA	A0A160DF84	Gordonia_phage	40.4	7.6e-14
WP_045530928.1|46459_47083_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.0	2.9e-24
