assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000953575.1_Staphylococcus_xylosus_C2a	NZ_LN554884	Staphylococcus xylosus strain C2a chromosome 1	1	156282-156382	1	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	GGAAATCAACAAGTTACAGATGGTTT	26	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|468aa|up_9|NZ_LN554884.1_144169_145573_+	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily	NA|44aa|up_8|NZ_LN554884.1_145674_145806_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|243aa|up_7|NZ_LN554884.1_146291_147020_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|365aa|up_6|NZ_LN554884.1_147016_148111_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|182aa|up_5|NZ_LN554884.1_148179_148725_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|184aa|up_4|NZ_LN554884.1_148818_149370_+	COG3479, COG3479, Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|483aa|up_3|NZ_LN554884.1_149440_150889_-	PRK10077, xylE, D-xylose transporter XylE; Provisional	NA|497aa|up_2|NZ_LN554884.1_150909_152400_-	TIGR01312, Xylulose_kinase, D-xylulose kinase	NA|441aa|up_1|NZ_LN554884.1_152405_153728_-	TIGR02630, Xylose_isomerase, xylose isomerase	NA|384aa|up_0|NZ_LN554884.1_153938_155090_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|151aa|down_0|NZ_LN554884.1_157152_157605_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|189aa|down_1|NZ_LN554884.1_157910_158477_+	pfam13273, DUF4064, Protein of unknown function (DUF4064)	NA|274aa|down_2|NZ_LN554884.1_158569_159391_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|308aa|down_3|NZ_LN554884.1_160283_161207_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|496aa|down_4|NZ_LN554884.1_161308_162796_+	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases	NA|195aa|down_5|NZ_LN554884.1_163124_163709_+	cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI	NA|367aa|down_6|NZ_LN554884.1_163701_164802_+	TIGR02352, Glycine_oxidase, glycine oxidase ThiO	NA|67aa|down_7|NZ_LN554884.1_164802_165003_+	PRK11840, PRK11840, bifunctional sulfur carrier protein/thiazole synthase protein; Provisional	NA|256aa|down_8|NZ_LN554884.1_165004_165772_+	PRK00208, thiG, thiazole synthase; Reviewed	NA|333aa|down_9|NZ_LN554884.1_165771_166770_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
GCF_000953575.1_Staphylococcus_xylosus_C2a	NZ_LN554884	Staphylococcus xylosus strain C2a chromosome 1	2	1133053-1133134	2	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	ATATTTAATTTGTGAAATAAATCACA	26	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|75aa|up_9|NZ_LN554884.1_1122519_1122744_+,NA	NA|75aa|up_9|NZ_LN554884.1_1122519_1122744_+	NA	NA|285aa|up_8|NZ_LN554884.1_1122908_1123763_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|309aa|up_7|NZ_LN554884.1_1124187_1125114_-	cd13608, PBP2_OpuCC_like, Substrate-binding protein OpuCC of ABC-type osmoregulatory transporter and related proteins; the type 2 periplasmic-binding protein fold	NA|488aa|up_6|NZ_LN554884.1_1125284_1126748_+	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	NA|348aa|up_5|NZ_LN554884.1_1127311_1128355_+	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|211aa|up_4|NZ_LN554884.1_1128361_1128994_+	PRK09289, PRK09289, riboflavin synthase	NA|394aa|up_3|NZ_LN554884.1_1129004_1130186_+	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|153aa|up_2|NZ_LN554884.1_1130199_1130658_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|334aa|up_1|NZ_LN554884.1_1130855_1131857_-	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism]	NA|275aa|up_0|NZ_LN554884.1_1132123_1132948_+	COG2267, PldB, Lysophospholipase [Lipid metabolism]	NA|319aa|down_0|NZ_LN554884.1_1133166_1134123_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|134aa|down_1|NZ_LN554884.1_1134273_1134675_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|187aa|down_2|NZ_LN554884.1_1134771_1135332_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|318aa|down_3|NZ_LN554884.1_1135328_1136282_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|390aa|down_4|NZ_LN554884.1_1136391_1137561_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|805aa|down_5|NZ_LN554884.1_1138079_1140494_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|104aa|down_6|NZ_LN554884.1_1140513_1140825_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|425aa|down_7|NZ_LN554884.1_1141173_1142448_-	pfam03486, HI0933_like, HI0933-like protein	NA|546aa|down_8|NZ_LN554884.1_1142577_1144215_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|233aa|down_9|NZ_LN554884.1_1144211_1144910_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]
GCF_000953575.1_Staphylococcus_xylosus_C2a	NZ_LN554884	Staphylococcus xylosus strain C2a chromosome 1	3	1953000-1953089	3	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	AGTCACTAGCTCAATTTATTGAGAGTG	27	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|164aa|up_5|NZ_LN554884.1_1946270_1946762_-,NA|201aa|up_1|NZ_LN554884.1_1950641_1951244_+,NA	NA|451aa|up_9|NZ_LN554884.1_1942149_1943502_-	TIGR00543, Salicylate_biosynthesis_isochorismate_synthase, isochorismate synthases	NA|313aa|up_8|NZ_LN554884.1_1943688_1944627_+	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|190aa|up_7|NZ_LN554884.1_1944700_1945270_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|71aa|up_6|NZ_LN554884.1_1945450_1945663_+	pfam05154, TM2, TM2 domain	NA|164aa|up_5|NZ_LN554884.1_1946270_1946762_-	NA	NA|73aa|up_4|NZ_LN554884.1_1948946_1949165_+	smart00914, IDEAL, A short protein domain of unknown function	NA|329aa|up_3|NZ_LN554884.1_1949264_1950251_-	TIGR00545, Probable_lipoate-protein_ligase_A, lipoyltransferase and lipoate-protein ligase	NA|62aa|up_2|NZ_LN554884.1_1950450_1950636_+	COG4873, COG4873, Uncharacterized protein conserved in bacteria [Function unknown]	NA|201aa|up_1|NZ_LN554884.1_1950641_1951244_+	NA	NA|503aa|up_0|NZ_LN554884.1_1951310_1952819_-	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]	NA|453aa|down_0|NZ_LN554884.1_1953173_1954532_-	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|594aa|down_1|NZ_LN554884.1_1954550_1956332_-	COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]	NA|266aa|down_2|NZ_LN554884.1_1956583_1957381_-	TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family	NA|521aa|down_3|NZ_LN554884.1_1957744_1959307_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|80aa|down_4|NZ_LN554884.1_1959319_1959559_-	pfam14166, YueH, YueH-like protein	NA|495aa|down_5|NZ_LN554884.1_1959548_1961033_-	PRK14022, PRK14022, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase	NA|392aa|down_6|NZ_LN554884.1_1961474_1962650_+	PRK13608, PRK13608, diacylglycerol glucosyltransferase; Provisional	NA|396aa|down_7|NZ_LN554884.1_1962627_1963815_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|170aa|down_8|NZ_LN554884.1_1964209_1964719_-	PRK13679, PRK13679, hypothetical protein; Provisional	NA|249aa|down_9|NZ_LN554884.1_1964804_1965551_-	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
