assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	1	146708-146786	1	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|226aa|down_4|NZ_LN614756.1_163541_164219_+	NA|278aa|up_9|NZ_LN614756.1_123735_124569_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NZ_LN614756.1_124556_125423_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NZ_LN614756.1_125416_126220_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NZ_LN614756.1_126251_126983_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NZ_LN614756.1_127102_127534_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NZ_LN614756.1_127562_127955_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|NZ_LN614756.1_128412_129165_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NZ_LN614756.1_141757_142942_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NZ_LN614756.1_143314_145666_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NZ_LN614756.1_145687_146227_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|263aa|down_0|NZ_LN614756.1_159278_160067_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NZ_LN614756.1_160063_161245_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|NZ_LN614756.1_161548_162451_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|NZ_LN614756.1_162472_163552_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|NZ_LN614756.1_163541_164219_+	NA	NA|72aa|down_5|NZ_LN614756.1_164261_164477_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|NZ_LN614756.1_164505_165585_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|NZ_LN614756.1_165584_166337_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|NZ_LN614756.1_166337_166895_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|NZ_LN614756.1_167064_168411_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	2	148720-148809	2	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	TGTGCGTTAGCACTTTAAGCAACAGAAT	28	1	6	148748-148781|148748-148781|148748-148781|148748-148781|148748-148781|148748-148781	NZ_LN614756.1_17851-17884|NZ_LN614756.1_131191-131224|NZ_LN614756.1_138138-138171|NZ_LN614756.1_3109764-3109731|NZ_LN614756.1_12396-12429|NZ_LN614756.1_1216118-1216151	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|226aa|down_4|NZ_LN614756.1_163541_164219_+	NA|278aa|up_9|NZ_LN614756.1_123735_124569_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NZ_LN614756.1_124556_125423_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NZ_LN614756.1_125416_126220_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NZ_LN614756.1_126251_126983_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NZ_LN614756.1_127102_127534_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NZ_LN614756.1_127562_127955_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|251aa|up_3|NZ_LN614756.1_128412_129165_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NZ_LN614756.1_141757_142942_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NZ_LN614756.1_143314_145666_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NZ_LN614756.1_145687_146227_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|263aa|down_0|NZ_LN614756.1_159278_160067_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NZ_LN614756.1_160063_161245_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|301aa|down_2|NZ_LN614756.1_161548_162451_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_3|NZ_LN614756.1_162472_163552_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_4|NZ_LN614756.1_163541_164219_+	NA	NA|72aa|down_5|NZ_LN614756.1_164261_164477_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_6|NZ_LN614756.1_164505_165585_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_7|NZ_LN614756.1_165584_166337_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_8|NZ_LN614756.1_166337_166895_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase	NA|449aa|down_9|NZ_LN614756.1_167064_168411_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	3	1130303-1130729	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,6,6	6	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|134aa|up_8|NZ_LN614756.1_1124985_1125387_+,NA|116aa|up_7|NZ_LN614756.1_1125380_1125728_+,NA|146aa|up_5|NZ_LN614756.1_1126145_1126583_+,NA|59aa|up_4|NZ_LN614756.1_1126575_1126752_+,NA|54aa|up_0|NZ_LN614756.1_1129403_1129565_+,NA|187aa|down_0|NZ_LN614756.1_1131228_1131789_+	NA|78aa|up_9|NZ_LN614756.1_1124742_1124976_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|134aa|up_8|NZ_LN614756.1_1124985_1125387_+	NA	NA|116aa|up_7|NZ_LN614756.1_1125380_1125728_+	NA	NA|142aa|up_6|NZ_LN614756.1_1125727_1126153_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_5|NZ_LN614756.1_1126145_1126583_+	NA	NA|59aa|up_4|NZ_LN614756.1_1126575_1126752_+	NA	NA|437aa|up_3|NZ_LN614756.1_1126753_1128064_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_2|NZ_LN614756.1_1128080_1128551_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_1|NZ_LN614756.1_1128622_1129063_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|54aa|up_0|NZ_LN614756.1_1129403_1129565_+	NA	NA|187aa|down_0|NZ_LN614756.1_1131228_1131789_+	NA	NA|190aa|down_1|NZ_LN614756.1_1131832_1132402_+	PRK07418, PRK07418, acetolactate synthase large subunit	NA|784aa|down_2|NZ_LN614756.1_1132472_1134824_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_3|NZ_LN614756.1_1134839_1135529_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|657aa|down_4|NZ_LN614756.1_1135521_1137492_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_5|NZ_LN614756.1_1137505_1137766_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_6|NZ_LN614756.1_1137770_1138190_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_7|NZ_LN614756.1_1138190_1139240_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_8|NZ_LN614756.1_1139232_1139850_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|268aa|down_9|NZ_LN614756.1_1139861_1140665_+	pfam12571, DUF3751, Phage tail-collar fibre protein
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	4	1130873-1131099	4,2	CRISPRCasFinder,PILER-CR	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,TTTTATATTAACTAAGTGGTATGTAAAG	29,28	0	0	NA	NA	I-A:I-A	3,2	3	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|134aa|up_8|NZ_LN614756.1_1124985_1125387_+,NA|116aa|up_7|NZ_LN614756.1_1125380_1125728_+,NA|146aa|up_5|NZ_LN614756.1_1126145_1126583_+,NA|59aa|up_4|NZ_LN614756.1_1126575_1126752_+,NA|54aa|up_0|NZ_LN614756.1_1129403_1129565_+,NA|187aa|down_0|NZ_LN614756.1_1131228_1131789_+	NA|78aa|up_9|NZ_LN614756.1_1124742_1124976_+	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|134aa|up_8|NZ_LN614756.1_1124985_1125387_+	NA	NA|116aa|up_7|NZ_LN614756.1_1125380_1125728_+	NA	NA|142aa|up_6|NZ_LN614756.1_1125727_1126153_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|146aa|up_5|NZ_LN614756.1_1126145_1126583_+	NA	NA|59aa|up_4|NZ_LN614756.1_1126575_1126752_+	NA	NA|437aa|up_3|NZ_LN614756.1_1126753_1128064_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_2|NZ_LN614756.1_1128080_1128551_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_1|NZ_LN614756.1_1128622_1129063_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|54aa|up_0|NZ_LN614756.1_1129403_1129565_+	NA	NA|187aa|down_0|NZ_LN614756.1_1131228_1131789_+	NA	NA|190aa|down_1|NZ_LN614756.1_1131832_1132402_+	PRK07418, PRK07418, acetolactate synthase large subunit	NA|784aa|down_2|NZ_LN614756.1_1132472_1134824_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|230aa|down_3|NZ_LN614756.1_1134839_1135529_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|657aa|down_4|NZ_LN614756.1_1135521_1137492_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_5|NZ_LN614756.1_1137505_1137766_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_6|NZ_LN614756.1_1137770_1138190_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_7|NZ_LN614756.1_1138190_1139240_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_8|NZ_LN614756.1_1139232_1139850_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|268aa|down_9|NZ_LN614756.1_1139861_1140665_+	pfam12571, DUF3751, Phage tail-collar fibre protein
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	5	1216153-1216241	5	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	GTGCGTTAGCACTTTAAGTAACGGAAT	27	1	3	1216180-1216214|1216180-1216214|1216180-1216214	NZ_LN614756.1_131253-131287|NZ_LN614756.1_138200-138234|NZ_LN614756.1_17913-17947	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|638aa|down_2|NZ_LN614756.1_1224623_1226537_+	NA|279aa|up_9|NZ_LN614756.1_1202091_1202928_+	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|262aa|up_8|NZ_LN614756.1_1202921_1203707_+	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|351aa|up_7|NZ_LN614756.1_1203706_1204759_+	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold	NA|283aa|up_6|NZ_LN614756.1_1204988_1205837_+	COG2199, COG2199, c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal    transduction mechanisms]	NA|555aa|up_5|NZ_LN614756.1_1205826_1207491_+	cd10923, CE4_COG5298, Putative NodB-like catalytic domain of uncharacterized proteins found in bacteria	NA|419aa|up_4|NZ_LN614756.1_1207539_1208796_+	cd06423, CESA_like, CESA_like is  the cellulose synthase superfamily	NA|694aa|up_3|NZ_LN614756.1_1208818_1210900_+	pfam03170, BcsB, Bacterial cellulose synthase subunit	NA|358aa|up_2|NZ_LN614756.1_1210948_1212022_+	cd19608, GH113_mannanase-like, Glycoside hydrolase family 113 beta-1,4-mannanase and similar proteins	NA|375aa|up_1|NZ_LN614756.1_1212075_1213200_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|325aa|up_0|NZ_LN614756.1_1213277_1214252_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|673aa|down_0|NZ_LN614756.1_1219846_1221865_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3	NA|671aa|down_1|NZ_LN614756.1_1222369_1224382_+	pfam01520, Amidase_3, N-acetylmuramoyl-L-alanine amidase	NA|638aa|down_2|NZ_LN614756.1_1224623_1226537_+	NA	NA|740aa|down_3|NZ_LN614756.1_1226529_1228749_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|277aa|down_4|NZ_LN614756.1_1228857_1229688_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|1156aa|down_5|NZ_LN614756.1_1229677_1233145_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1276aa|down_6|NZ_LN614756.1_1233144_1236972_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|404aa|down_7|NZ_LN614756.1_1237017_1238229_+	TIGR00619, Nuclease_SbcCD_subunit_D, exonuclease SbcD	NA|1176aa|down_8|NZ_LN614756.1_1238215_1241743_+	TIGR00618, Nuclease_SbcCD_subunit_C, exonuclease SbcC	NA|418aa|down_9|NZ_LN614756.1_1241873_1243127_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	6	1440053-1440936	3,6,2	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	29,29,29	0	0	NA	NA	I-A:I-A:I-A	13,13,13	13	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|52aa|down_0|NZ_LN614756.1_1442119_1442275_+,NA|73aa|down_1|NZ_LN614756.1_1442553_1442772_+,NA|128aa|down_2|NZ_LN614756.1_1443992_1444376_-,NA|115aa|down_3|NZ_LN614756.1_1444502_1444847_+,NA|72aa|down_4|NZ_LN614756.1_1445029_1445245_+,NA|106aa|down_5|NZ_LN614756.1_1446230_1446548_-,NA|65aa|down_8|NZ_LN614756.1_1448933_1449128_-	NA|271aa|up_9|NZ_LN614756.1_1427162_1427975_+	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)	NA|442aa|up_8|NZ_LN614756.1_1428178_1429504_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|360aa|up_7|NZ_LN614756.1_1429716_1430796_+	pfam02618, YceG, YceG-like family	NA|225aa|up_6|NZ_LN614756.1_1430967_1431642_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_5|NZ_LN614756.1_1431628_1432876_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_4|NZ_LN614756.1_1432947_1434612_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|95aa|up_3|NZ_LN614756.1_1434708_1434993_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK	NA|506aa|up_2|NZ_LN614756.1_1435015_1436533_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_1|NZ_LN614756.1_1436657_1437479_-	sd00006, TPR, Tetratricopeptide repeat	NA|476aa|up_0|NZ_LN614756.1_1437669_1439097_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|52aa|down_0|NZ_LN614756.1_1442119_1442275_+	NA	NA|73aa|down_1|NZ_LN614756.1_1442553_1442772_+	NA	NA|128aa|down_2|NZ_LN614756.1_1443992_1444376_-	NA	NA|115aa|down_3|NZ_LN614756.1_1444502_1444847_+	NA	NA|72aa|down_4|NZ_LN614756.1_1445029_1445245_+	NA	NA|106aa|down_5|NZ_LN614756.1_1446230_1446548_-	NA	NA|130aa|down_6|NZ_LN614756.1_1447608_1447998_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|170aa|down_7|NZ_LN614756.1_1448322_1448832_+	pfam04892, VanZ, VanZ like family	NA|65aa|down_8|NZ_LN614756.1_1448933_1449128_-	NA	NA|131aa|down_9|NZ_LN614756.1_1449643_1450036_-	PRK05803, PRK05803, RNA polymerase sporulation sigma factor SigK
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	7	1650492-1651316	4,7,3	PILER-CR,CRISPRCasFinder,CRT	no	DinG	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	11,12,12	12	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|51aa|up_0|NZ_LN614756.1_1650059_1650212_+,NA|80aa|down_4|NZ_LN614756.1_1658462_1658702_+,NA|59aa|down_5|NZ_LN614756.1_1658888_1659065_-	NA|260aa|up_9|NZ_LN614756.1_1639925_1640705_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|195aa|up_8|NZ_LN614756.1_1640798_1641383_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|477aa|up_7|NZ_LN614756.1_1641582_1643013_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_6|NZ_LN614756.1_1643330_1644275_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_5|NZ_LN614756.1_1644545_1645481_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|198aa|up_4|NZ_LN614756.1_1645599_1646193_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|143aa|up_3|NZ_LN614756.1_1646299_1646728_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|223aa|up_2|NZ_LN614756.1_1646794_1647463_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_1|NZ_LN614756.1_1647580_1648936_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|51aa|up_0|NZ_LN614756.1_1650059_1650212_+	NA	NA|578aa|down_0|NZ_LN614756.1_1651641_1653375_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|NZ_LN614756.1_1653614_1654460_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|NZ_LN614756.1_1654490_1656725_-	cd01948, EAL, EAL domain	NA|270aa|down_3|NZ_LN614756.1_1657508_1658318_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|NZ_LN614756.1_1658462_1658702_+	NA	NA|59aa|down_5|NZ_LN614756.1_1658888_1659065_-	NA	NA|225aa|down_6|NZ_LN614756.1_1659569_1660244_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|122aa|down_7|NZ_LN614756.1_1661094_1661460_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|262aa|down_8|NZ_LN614756.1_1661924_1662710_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|265aa|down_9|NZ_LN614756.1_1662806_1663601_-	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	8	1761576-1762131	5,8,4	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Unclear	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29,29	1	1	1761671-1761706	NZ_LN614756.1_1108944-1108979	I-A:I-A:I-A	8,8,8	8	TypeV	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|50aa|up_9|NZ_LN614756.1_1750383_1750533_+,NA|190aa|up_7|NZ_LN614756.1_1751447_1752017_+,NA|61aa|up_4|NZ_LN614756.1_1754966_1755149_-,NA|95aa|down_0|NZ_LN614756.1_1762298_1762583_-,NA|330aa|down_5|NZ_LN614756.1_1767032_1768022_+	NA|50aa|up_9|NZ_LN614756.1_1750383_1750533_+	NA	NA|300aa|up_8|NZ_LN614756.1_1750543_1751443_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|NZ_LN614756.1_1751447_1752017_+	NA	NA|216aa|up_6|NZ_LN614756.1_1752183_1752831_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|NZ_LN614756.1_1753220_1754135_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|NZ_LN614756.1_1754966_1755149_-	NA	NA|283aa|up_3|NZ_LN614756.1_1755578_1756427_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|NZ_LN614756.1_1756445_1757273_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|308aa|up_1|NZ_LN614756.1_1757247_1758171_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|NZ_LN614756.1_1758823_1760917_+	cd01948, EAL, EAL domain	NA|95aa|down_0|NZ_LN614756.1_1762298_1762583_-	NA	NA|273aa|down_1|NZ_LN614756.1_1762789_1763608_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_2|NZ_LN614756.1_1763740_1765861_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_3|NZ_LN614756.1_1765886_1766114_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_4|NZ_LN614756.1_1766440_1766881_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|330aa|down_5|NZ_LN614756.1_1767032_1768022_+	NA	NA|403aa|down_6|NZ_LN614756.1_1768498_1769707_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_7|NZ_LN614756.1_1769767_1770649_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|315aa|down_8|NZ_LN614756.1_1771034_1771979_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_9|NZ_LN614756.1_1772201_1772747_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	9	1940781-1941794	6,9,5	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Unclear	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	15,15,15	15	TypeV	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|80aa|up_0|NZ_LN614756.1_1940345_1940585_+,NA|96aa|down_0|NZ_LN614756.1_1942202_1942490_+,NA|59aa|down_5|NZ_LN614756.1_1948809_1948986_-,NA|341aa|down_6|NZ_LN614756.1_1949560_1950583_+,NA|258aa|down_8|NZ_LN614756.1_1951489_1952263_+	NA|577aa|up_9|NZ_LN614756.1_1924464_1926195_+	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion]	NA|172aa|up_8|NZ_LN614756.1_1926719_1927235_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_7|NZ_LN614756.1_1928040_1930515_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_6|NZ_LN614756.1_1930514_1931972_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_5|NZ_LN614756.1_1932394_1934752_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_4|NZ_LN614756.1_1934837_1935155_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	cas14j|373aa|up_3|NZ_LN614756.1_1936173_1937292_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|252aa|up_2|NZ_LN614756.1_1937467_1938223_+	pfam12395, DUF3658, Protein of unknown function	NA|424aa|up_1|NZ_LN614756.1_1938862_1940134_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|80aa|up_0|NZ_LN614756.1_1940345_1940585_+	NA	NA|96aa|down_0|NZ_LN614756.1_1942202_1942490_+	NA	NA|184aa|down_1|NZ_LN614756.1_1943028_1943580_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|323aa|down_2|NZ_LN614756.1_1943764_1944733_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_3|NZ_LN614756.1_1945027_1946872_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|177aa|down_4|NZ_LN614756.1_1947176_1947707_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_5|NZ_LN614756.1_1948809_1948986_-	NA	NA|341aa|down_6|NZ_LN614756.1_1949560_1950583_+	NA	NA|296aa|down_7|NZ_LN614756.1_1950596_1951484_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_8|NZ_LN614756.1_1951489_1952263_+	NA	NA|242aa|down_9|NZ_LN614756.1_1952374_1953100_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	10	2258328-2258495	7	PILER-CR	no	csa3	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Type I-A	AGTTTTATATCAACTATGTGGTATGTAAAGTTTTTA	36	0	0	NA	NA	I-A	2	2	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|133aa|up_3|NZ_LN614756.1_2254837_2255236_-,NA|59aa|up_1|NZ_LN614756.1_2257367_2257544_+,NA|55aa|down_2|NZ_LN614756.1_2260042_2260207_-,NA|20aa|down_6|NZ_LN614756.1_2262631_2262691_+	NA|119aa|up_9|NZ_LN614756.1_2246079_2246436_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|204aa|up_8|NZ_LN614756.1_2247834_2248446_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|113aa|up_7|NZ_LN614756.1_2248743_2249082_+	pfam12650, DUF3784, Domain of unknown function (DUF3784)	NA|479aa|up_6|NZ_LN614756.1_2249488_2250925_-	PRK14328, PRK14328, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|479aa|up_5|NZ_LN614756.1_2251172_2252609_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|184aa|up_4|NZ_LN614756.1_2253436_2253988_-	pfam17099, TrpP, Tryptophan transporter TrpP	NA|133aa|up_3|NZ_LN614756.1_2254837_2255236_-	NA	NA|162aa|up_2|NZ_LN614756.1_2255591_2256077_-	pfam08239, SH3_3, Bacterial SH3 domain	NA|59aa|up_1|NZ_LN614756.1_2257367_2257544_+	NA	NA|67aa|up_0|NZ_LN614756.1_2257769_2257970_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|61aa|down_0|NZ_LN614756.1_2258720_2258903_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|282aa|down_1|NZ_LN614756.1_2258973_2259819_+	pfam13026, DUF3887, Protein of unknown function (DUF3887)	NA|55aa|down_2|NZ_LN614756.1_2260042_2260207_-	NA	NA|111aa|down_3|NZ_LN614756.1_2260747_2261080_-	pfam02627, CMD, Carboxymuconolactone decarboxylase family	NA|214aa|down_4|NZ_LN614756.1_2261323_2261965_-	COG5658, COG5658, Predicted integral membrane protein [Function unknown]	csa3|98aa|down_5|NZ_LN614756.1_2261945_2262239_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|20aa|down_6|NZ_LN614756.1_2262631_2262691_+	NA	NA|251aa|down_7|NZ_LN614756.1_2263206_2263959_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|552aa|down_8|NZ_LN614756.1_2264017_2265673_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|360aa|down_9|NZ_LN614756.1_2266945_2268025_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	11	2620234-2621185	10,6,8	CRISPRCasFinder,CRT,PILER-CR	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	14,14,13	14	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|138aa|up_5|NZ_LN614756.1_2616488_2616902_+,NA|99aa|up_4|NZ_LN614756.1_2616920_2617217_+,NA|106aa|up_3|NZ_LN614756.1_2617499_2617817_+,NA|155aa|up_2|NZ_LN614756.1_2617952_2618417_+,NA|54aa|up_1|NZ_LN614756.1_2618744_2618906_-,NA|51aa|up_0|NZ_LN614756.1_2619890_2620043_-,NA|51aa|down_1|NZ_LN614756.1_2622568_2622721_-,NA|108aa|down_2|NZ_LN614756.1_2622994_2623318_-,NA|85aa|down_3|NZ_LN614756.1_2623353_2623608_-,NA|57aa|down_6|NZ_LN614756.1_2627395_2627566_+,NA|59aa|down_9|NZ_LN614756.1_2629268_2629445_+	NA|687aa|up_9|NZ_LN614756.1_2612118_2614179_-	cd16923, HATPase_VanS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Enterococcus faecium VanS	NA|231aa|up_8|NZ_LN614756.1_2614374_2615067_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|125aa|up_7|NZ_LN614756.1_2615678_2616053_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|78aa|up_6|NZ_LN614756.1_2616271_2616505_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|138aa|up_5|NZ_LN614756.1_2616488_2616902_+	NA	NA|99aa|up_4|NZ_LN614756.1_2616920_2617217_+	NA	NA|106aa|up_3|NZ_LN614756.1_2617499_2617817_+	NA	NA|155aa|up_2|NZ_LN614756.1_2617952_2618417_+	NA	NA|54aa|up_1|NZ_LN614756.1_2618744_2618906_-	NA	NA|51aa|up_0|NZ_LN614756.1_2619890_2620043_-	NA	NA|308aa|down_0|NZ_LN614756.1_2621451_2622375_-	pfam09851, SHOCT, Short C-terminal domain	NA|51aa|down_1|NZ_LN614756.1_2622568_2622721_-	NA	NA|108aa|down_2|NZ_LN614756.1_2622994_2623318_-	NA	NA|85aa|down_3|NZ_LN614756.1_2623353_2623608_-	NA	NA|126aa|down_4|NZ_LN614756.1_2625331_2625709_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|165aa|down_5|NZ_LN614756.1_2626512_2627007_+	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|57aa|down_6|NZ_LN614756.1_2627395_2627566_+	NA	NA|117aa|down_7|NZ_LN614756.1_2628393_2628744_+	pfam12676, DUF3796, Protein of unknown function (DUF3796)	NA|67aa|down_8|NZ_LN614756.1_2628745_2628946_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|59aa|down_9|NZ_LN614756.1_2629268_2629445_+	NA
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	12	2782867-2783024	9	PILER-CR	no	cas3,cas5,cas7,cas6	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Unclear	AGGTTTAAGATTAACTAAGTGG---------ATTTCA	37	0	0	NA	NA	NA	2	2	Unclear	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|492aa|down_3|NZ_LN614756.1_2787449_2788925_-,NA|59aa|down_5|NZ_LN614756.1_2789767_2789944_-	NA|448aa|up_9|NZ_LN614756.1_2775323_2776667_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|79aa|up_8|NZ_LN614756.1_2776679_2776916_-	pfam07873, YabP, YabP family	NA|188aa|up_7|NZ_LN614756.1_2777128_2777692_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|NZ_LN614756.1_2777884_2778382_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|NZ_LN614756.1_2778492_2778936_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|NZ_LN614756.1_2778965_2779145_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|NZ_LN614756.1_2779307_2779658_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|NZ_LN614756.1_2779700_2780999_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|NZ_LN614756.1_2781000_2781759_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|NZ_LN614756.1_2781777_2782725_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|NZ_LN614756.1_2783165_2785574_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|266aa|down_1|NZ_LN614756.1_2785600_2786398_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|339aa|down_2|NZ_LN614756.1_2786413_2787430_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|492aa|down_3|NZ_LN614756.1_2787449_2788925_-	NA	cas6|246aa|down_4|NZ_LN614756.1_2788929_2789667_-	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|59aa|down_5|NZ_LN614756.1_2789767_2789944_-	NA	NA|370aa|down_6|NZ_LN614756.1_2790402_2791512_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_7|NZ_LN614756.1_2791541_2792309_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|458aa|down_8|NZ_LN614756.1_2792496_2793870_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_9|NZ_LN614756.1_2793905_2794841_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	13	2864782-2865207	10,11,7	PILER-CR,CRISPRCasFinder,CRT	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	GTTTTATATTAACTATATGGAATGTAAAT,ATTTACATTCCATATAGTTAATATAAAAC,ATTTACATTCCATATAGTTAATATAAAAC	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,6,6	6	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|53aa|down_0|NZ_LN614756.1_2865492_2865651_-	NA|253aa|up_9|NZ_LN614756.1_2853119_2853878_-	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|451aa|up_8|NZ_LN614756.1_2854008_2855361_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|517aa|up_7|NZ_LN614756.1_2855457_2857008_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|272aa|up_6|NZ_LN614756.1_2857058_2857874_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|161aa|up_5|NZ_LN614756.1_2857894_2858377_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|127aa|up_4|NZ_LN614756.1_2858660_2859041_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|406aa|up_3|NZ_LN614756.1_2859135_2860353_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|543aa|up_2|NZ_LN614756.1_2861011_2862640_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|332aa|up_1|NZ_LN614756.1_2862760_2863756_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|128aa|up_0|NZ_LN614756.1_2863933_2864317_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|53aa|down_0|NZ_LN614756.1_2865492_2865651_-	NA	NA|457aa|down_1|NZ_LN614756.1_2866009_2867380_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|373aa|down_2|NZ_LN614756.1_2867593_2868712_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|223aa|down_3|NZ_LN614756.1_2869028_2869697_-	pfam04892, VanZ, VanZ like family	NA|807aa|down_4|NZ_LN614756.1_2870550_2872971_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|117aa|down_5|NZ_LN614756.1_2873324_2873675_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|191aa|down_6|NZ_LN614756.1_2873791_2874364_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|230aa|down_7|NZ_LN614756.1_2874364_2875054_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|213aa|down_8|NZ_LN614756.1_2875329_2875968_+	PRK00117, recX, recombination regulator RecX; Reviewed	NA|668aa|down_9|NZ_LN614756.1_2876120_2878124_+	PLN02447, PLN02447, 1,4-alpha-glucan-branching enzyme
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	14	3096795-3097120	12	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	TTACCATCTATTTGTTGCCATCCTGT	26	0	0	NA	NA	NA	5	5	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|107aa|down_2|NZ_LN614756.1_3099983_3100304_-,NA|664aa|down_3|NZ_LN614756.1_3100293_3102285_-,NA|458aa|down_7|NZ_LN614756.1_3113074_3114448_-	NA|218aa|up_9|NZ_LN614756.1_3081781_3082435_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|448aa|up_8|NZ_LN614756.1_3082937_3084281_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|455aa|up_7|NZ_LN614756.1_3084459_3085824_+	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|622aa|up_6|NZ_LN614756.1_3086001_3087867_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|406aa|up_5|NZ_LN614756.1_3088102_3089320_-	cd17396, MFS_YdiM_like, Inner membrane transport protein YdiM and similar proteins of the Major Facilitator Superfamily of transporters	NA|290aa|up_4|NZ_LN614756.1_3089519_3090389_-	PRK12548, PRK12548, shikimate dehydrogenase	NA|641aa|up_3|NZ_LN614756.1_3090464_3092387_-	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2	NA|283aa|up_2|NZ_LN614756.1_3092465_3093314_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|294aa|up_1|NZ_LN614756.1_3093726_3094608_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|270aa|up_0|NZ_LN614756.1_3094815_3095625_-	cd01027, TOPRIM_RNase_M5_like, TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea	NA|338aa|down_0|NZ_LN614756.1_3097879_3098893_-	PLN02240, PLN02240, UDP-glucose 4-epimerase	NA|290aa|down_1|NZ_LN614756.1_3098916_3099786_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|107aa|down_2|NZ_LN614756.1_3099983_3100304_-	NA	NA|664aa|down_3|NZ_LN614756.1_3100293_3102285_-	NA	NA|848aa|down_4|NZ_LN614756.1_3102407_3104951_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|226aa|down_5|NZ_LN614756.1_3105694_3106372_+	cd05826, Sortase_B, Sortase domain found in class B sortases	NA|313aa|down_6|NZ_LN614756.1_3111764_3112703_+	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs	NA|458aa|down_7|NZ_LN614756.1_3113074_3114448_-	NA	NA|441aa|down_8|NZ_LN614756.1_3114676_3115999_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|235aa|down_9|NZ_LN614756.1_3115991_3116696_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	15	3151753-3151928	13	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	2	2	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|222aa|down_0|NZ_LN614756.1_3153221_3153887_+	NA|205aa|up_9|NZ_LN614756.1_3139781_3140396_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_LN614756.1_3140410_3140860_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_LN614756.1_3140884_3143092_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_LN614756.1_3143165_3143678_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_LN614756.1_3143690_3146141_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_LN614756.1_3146153_3147818_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_LN614756.1_3148115_3148613_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_LN614756.1_3148641_3150021_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_LN614756.1_3150325_3150472_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_LN614756.1_3150501_3151080_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_LN614756.1_3153221_3153887_+	NA	NA|901aa|down_1|NZ_LN614756.1_3154392_3157095_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_LN614756.1_3157120_3158671_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_LN614756.1_3158993_3160706_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_LN614756.1_3161059_3161320_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_LN614756.1_3161512_3162724_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_LN614756.1_3162955_3164689_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_LN614756.1_3164728_3165127_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_LN614756.1_3165129_3166677_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_LN614756.1_3166991_3167897_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	16	3152035-3152324	14	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	4	4	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|222aa|down_0|NZ_LN614756.1_3153221_3153887_+	NA|205aa|up_9|NZ_LN614756.1_3139781_3140396_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_LN614756.1_3140410_3140860_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_LN614756.1_3140884_3143092_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_LN614756.1_3143165_3143678_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_LN614756.1_3143690_3146141_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_LN614756.1_3146153_3147818_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_LN614756.1_3148115_3148613_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_LN614756.1_3148641_3150021_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_LN614756.1_3150325_3150472_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_LN614756.1_3150501_3151080_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_LN614756.1_3153221_3153887_+	NA	NA|901aa|down_1|NZ_LN614756.1_3154392_3157095_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_LN614756.1_3157120_3158671_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_LN614756.1_3158993_3160706_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_LN614756.1_3161059_3161320_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_LN614756.1_3161512_3162724_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_LN614756.1_3162955_3164689_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_LN614756.1_3164728_3165127_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_LN614756.1_3165129_3166677_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_LN614756.1_3166991_3167897_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	17	3152527-3152617	15	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|222aa|down_0|NZ_LN614756.1_3153221_3153887_+	NA|205aa|up_9|NZ_LN614756.1_3139781_3140396_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_LN614756.1_3140410_3140860_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_LN614756.1_3140884_3143092_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_LN614756.1_3143165_3143678_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_LN614756.1_3143690_3146141_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_LN614756.1_3146153_3147818_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_LN614756.1_3148115_3148613_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_LN614756.1_3148641_3150021_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_LN614756.1_3150325_3150472_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_LN614756.1_3150501_3151080_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_LN614756.1_3153221_3153887_+	NA	NA|901aa|down_1|NZ_LN614756.1_3154392_3157095_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_LN614756.1_3157120_3158671_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_LN614756.1_3158993_3160706_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_LN614756.1_3161059_3161320_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_LN614756.1_3161512_3162724_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_LN614756.1_3162955_3164689_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_LN614756.1_3164728_3165127_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_LN614756.1_3165129_3166677_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_LN614756.1_3166991_3167897_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	18	3261178-3261389	16	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	TCTTCTGATGGTGGTACTGGAGGATT	26	0	0	NA	NA	NA	3	3	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|459aa|up_6|NZ_LN614756.1_3252714_3254091_+,NA	NA|169aa|up_9|NZ_LN614756.1_3250105_3250612_-	PRK10519, PRK10519, hypothetical protein; Provisional	NA|216aa|up_8|NZ_LN614756.1_3250613_3251261_-	COG3314, COG3314, Uncharacterized protein conserved in bacteria [Function unknown]	NA|391aa|up_7|NZ_LN614756.1_3251274_3252447_-	cd03885, M20_CPDG2, M20 Peptidase Glutamate carboxypeptidase, a periplasmic enzyme	NA|459aa|up_6|NZ_LN614756.1_3252714_3254091_+	NA	NA|177aa|up_5|NZ_LN614756.1_3255026_3255557_-	pfam12641, Flavodoxin_3, Flavodoxin domain	NA|365aa|up_4|NZ_LN614756.1_3255632_3256727_-	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain	NA|149aa|up_3|NZ_LN614756.1_3256728_3257175_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|397aa|up_2|NZ_LN614756.1_3257480_3258671_+	PRK06836, PRK06836, pyridoxal phosphate-dependent aminotransferase	NA|321aa|up_1|NZ_LN614756.1_3258840_3259803_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|221aa|up_0|NZ_LN614756.1_3259924_3260587_-	cd20183, M34_PPEP, Pro-Pro endopeptidase (PPEP) and similar proteins; belongs to peptidase family M34	NA|393aa|down_0|NZ_LN614756.1_3264205_3265384_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|925aa|down_1|NZ_LN614756.1_3266008_3268783_-	COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]	NA|419aa|down_2|NZ_LN614756.1_3268954_3270211_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|501aa|down_3|NZ_LN614756.1_3270282_3271785_-	COG2978, AbgT, Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]	NA|397aa|down_4|NZ_LN614756.1_3271875_3273066_-	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family	NA|363aa|down_5|NZ_LN614756.1_3273304_3274393_-	COG3949, COG3949, Uncharacterized membrane protein [Function unknown]	NA|233aa|down_6|NZ_LN614756.1_3274677_3275376_-	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators	NA|502aa|down_7|NZ_LN614756.1_3275489_3276995_-	cd16956, HATPase_YehU-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli YehU	NA|424aa|down_8|NZ_LN614756.1_3277410_3278682_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|535aa|down_9|NZ_LN614756.1_3279497_3281102_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	19	3354042-3354269	17,11	CRISPRCasFinder,PILER-CR	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTATATTAACTATGTGGTATGTAAA	29,28	0	0	NA	NA	I-A:I-A	3,2	3	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|187aa|up_0|NZ_LN614756.1_3353351_3353912_-,NA|54aa|down_0|NZ_LN614756.1_3355575_3355737_-,NA|59aa|down_4|NZ_LN614756.1_3358388_3358565_-,NA|146aa|down_5|NZ_LN614756.1_3358557_3358995_-,NA|116aa|down_7|NZ_LN614756.1_3359412_3359760_-,NA|134aa|down_8|NZ_LN614756.1_3359753_3360155_-	NA|268aa|up_9|NZ_LN614756.1_3344475_3345279_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|206aa|up_8|NZ_LN614756.1_3345290_3345908_-	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|350aa|up_7|NZ_LN614756.1_3345900_3346950_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|140aa|up_6|NZ_LN614756.1_3346950_3347370_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|87aa|up_5|NZ_LN614756.1_3347374_3347635_-	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|657aa|up_4|NZ_LN614756.1_3347648_3349619_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|230aa|up_3|NZ_LN614756.1_3349611_3350301_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|784aa|up_2|NZ_LN614756.1_3350316_3352668_-	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|190aa|up_1|NZ_LN614756.1_3352738_3353308_-	PRK07418, PRK07418, acetolactate synthase large subunit	NA|187aa|up_0|NZ_LN614756.1_3353351_3353912_-	NA	NA|54aa|down_0|NZ_LN614756.1_3355575_3355737_-	NA	NA|147aa|down_1|NZ_LN614756.1_3356077_3356518_-	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|157aa|down_2|NZ_LN614756.1_3356589_3357060_-	pfam09393, DUF2001, Phage tail tube protein	NA|437aa|down_3|NZ_LN614756.1_3357076_3358387_-	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|59aa|down_4|NZ_LN614756.1_3358388_3358565_-	NA	NA|146aa|down_5|NZ_LN614756.1_3358557_3358995_-	NA	NA|142aa|down_6|NZ_LN614756.1_3358987_3359413_-	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|116aa|down_7|NZ_LN614756.1_3359412_3359760_-	NA	NA|134aa|down_8|NZ_LN614756.1_3359753_3360155_-	NA	NA|78aa|down_9|NZ_LN614756.1_3360164_3360398_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	20	3354413-3354838	18,8,12	CRISPRCasFinder,CRT,PILER-CR	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	6,6,4	6	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|187aa|up_0|NZ_LN614756.1_3353351_3353912_-,NA|54aa|down_0|NZ_LN614756.1_3355575_3355737_-,NA|59aa|down_4|NZ_LN614756.1_3358388_3358565_-,NA|146aa|down_5|NZ_LN614756.1_3358557_3358995_-,NA|116aa|down_7|NZ_LN614756.1_3359412_3359760_-,NA|134aa|down_8|NZ_LN614756.1_3359753_3360155_-	NA|268aa|up_9|NZ_LN614756.1_3344475_3345279_-	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|206aa|up_8|NZ_LN614756.1_3345290_3345908_-	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|350aa|up_7|NZ_LN614756.1_3345900_3346950_-	pfam04865, Baseplate_J, Baseplate J-like protein	NA|140aa|up_6|NZ_LN614756.1_3346950_3347370_-	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|87aa|up_5|NZ_LN614756.1_3347374_3347635_-	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|657aa|up_4|NZ_LN614756.1_3347648_3349619_-	pfam00877, NLPC_P60, NlpC/P60 family	NA|230aa|up_3|NZ_LN614756.1_3349611_3350301_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|784aa|up_2|NZ_LN614756.1_3350316_3352668_-	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|190aa|up_1|NZ_LN614756.1_3352738_3353308_-	PRK07418, PRK07418, acetolactate synthase large subunit	NA|187aa|up_0|NZ_LN614756.1_3353351_3353912_-	NA	NA|54aa|down_0|NZ_LN614756.1_3355575_3355737_-	NA	NA|147aa|down_1|NZ_LN614756.1_3356077_3356518_-	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|157aa|down_2|NZ_LN614756.1_3356589_3357060_-	pfam09393, DUF2001, Phage tail tube protein	NA|437aa|down_3|NZ_LN614756.1_3357076_3358387_-	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|59aa|down_4|NZ_LN614756.1_3358388_3358565_-	NA	NA|146aa|down_5|NZ_LN614756.1_3358557_3358995_-	NA	NA|142aa|down_6|NZ_LN614756.1_3358987_3359413_-	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|116aa|down_7|NZ_LN614756.1_3359412_3359760_-	NA	NA|134aa|down_8|NZ_LN614756.1_3359753_3360155_-	NA	NA|78aa|down_9|NZ_LN614756.1_3360164_3360398_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	21	3412704-3413979	19,9,13	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	19,17,16	19	Unclear	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA|67aa|up_7|NZ_LN614756.1_3405597_3405798_+,NA|260aa|up_1|NZ_LN614756.1_3410980_3411760_+,NA	NA|740aa|up_9|NZ_LN614756.1_3399944_3402164_-	cd01948, EAL, EAL domain	NA|885aa|up_8|NZ_LN614756.1_3402439_3405094_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|NZ_LN614756.1_3405597_3405798_+	NA	NA|197aa|up_6|NZ_LN614756.1_3406004_3406595_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|NZ_LN614756.1_3406597_3407473_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|NZ_LN614756.1_3407548_3408940_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|NZ_LN614756.1_3408943_3410080_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|NZ_LN614756.1_3410111_3410657_-	pfam02632, BioY, BioY family	NA|260aa|up_1|NZ_LN614756.1_3410980_3411760_+	NA	NA|143aa|up_0|NZ_LN614756.1_3412214_3412643_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|NZ_LN614756.1_3414162_3414429_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NZ_LN614756.1_3414431_3415412_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|173aa|down_2|NZ_LN614756.1_3415414_3415933_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|NZ_LN614756.1_3415980_3418302_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|NZ_LN614756.1_3418312_3419014_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|NZ_LN614756.1_3419015_3419930_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|626aa|down_6|NZ_LN614756.1_3419931_3421809_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|246aa|down_7|NZ_LN614756.1_3421814_3422552_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|306aa|down_8|NZ_LN614756.1_3422629_3423547_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|NZ_LN614756.1_3423826_3425743_-	pfam02687, FtsX, FtsX-like permease family
GCF_000953275.1_CD630DERM	NZ_LN614756	Clostridioides difficile strain 630Derm chromosome 1	22	4153025-4153110	20	CRISPRCasFinder	no		cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	Orphan	AAAGTGCTAAAGCACGTCGCCAAC	24	1	2	4153049-4153086|4153049-4153086	NZ_LN614756.1_12421-12384|NZ_LN614756.1_3109739-3109776	NA	1	1	Orphan	cas14k,csa3,RT,WYL,cas3,cas14j,DEDDh,DinG,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2,PD-DExK	NA,NA|65aa|down_0|NZ_LN614756.1_4154983_4155178_-	NA|477aa|up_9|NZ_LN614756.1_4140750_4142181_+	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|143aa|up_8|NZ_LN614756.1_4142217_4142646_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|235aa|up_7|NZ_LN614756.1_4142833_4143538_-	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase	NA|278aa|up_6|NZ_LN614756.1_4143560_4144394_-	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase	NA|249aa|up_5|NZ_LN614756.1_4144394_4145141_-	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|298aa|up_4|NZ_LN614756.1_4145218_4146112_-	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown]	NA|312aa|up_3|NZ_LN614756.1_4146108_4147044_-	PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated	NA|230aa|up_2|NZ_LN614756.1_4147046_4147736_-	COG0125, Tmk, Thymidylate kinase [Nucleotide transport and metabolism]	NA|470aa|up_1|NZ_LN614756.1_4147866_4149276_-	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|64aa|up_0|NZ_LN614756.1_4149430_4149622_-	pfam04070, DUF378, Domain of unknown function (DUF378)	NA|65aa|down_0|NZ_LN614756.1_4154983_4155178_-	NA	NA|510aa|down_1|NZ_LN614756.1_4155486_4157016_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|160aa|down_2|NZ_LN614756.1_4157030_4157510_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|323aa|down_3|NZ_LN614756.1_4157618_4158587_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|257aa|down_4|NZ_LN614756.1_4158723_4159494_-	PRK13318, PRK13318, type III pantothenate kinase	NA|197aa|down_5|NZ_LN614756.1_4159512_4160103_-	COG4684, COG4684, Predicted membrane protein [Function unknown]	NA|323aa|down_6|NZ_LN614756.1_4160286_4161255_-	cd02252, nylC_like, nylC-like family; composed of proteins with similarity to Flavobacterium endo-type 6-aminohexanoate-oligomer hydrolase (EIII), the product of the nylon oligomer degradation gene, nylC	NA|326aa|down_7|NZ_LN614756.1_4161247_4162225_-	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA|657aa|down_8|NZ_LN614756.1_4162539_4164510_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|463aa|down_9|NZ_LN614756.1_4164543_4165932_-	TIGR02432, tRNAIle-lysidine_synthase, tRNA(Ile)-lysidine synthetase, N-terminal domain
