assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000952955.1_EcRV308Ch	NZ_LM995446	Escherichia coli strain K-12 substr. RV308 chromosome 1	1	42181-42312	1	PILER-CR	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTTTCAATATTGGTGAT	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|274aa|up_9|NZ_LM995446.1_28373_29195_+	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|383aa|up_8|NZ_LM995446.1_29650_30799_+	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|1074aa|up_7|NZ_LM995446.1_30816_34038_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|132aa|up_6|NZ_LM995446.1_34299_34695_+	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|197aa|up_5|NZ_LM995446.1_34780_35371_-	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|262aa|up_4|NZ_LM995446.1_35376_36162_-	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|518aa|up_3|NZ_LM995446.1_36270_37824_-	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|406aa|up_2|NZ_LM995446.1_37897_39115_-	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|381aa|up_1|NZ_LM995446.1_39243_40386_-	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|505aa|up_0|NZ_LM995446.1_40416_41931_-	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|257aa|down_0|NZ_LM995446.1_42402_43173_+	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|314aa|down_1|NZ_LM995446.1_43187_44129_+	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|429aa|down_2|NZ_LM995446.1_44179_45466_+	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|96aa|down_3|NZ_LM995446.1_45462_45750_+	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|444aa|down_4|NZ_LM995446.1_45806_47138_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|177aa|down_5|NZ_LM995446.1_47245_47776_+	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|621aa|down_6|NZ_LM995446.1_47768_49631_+	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|160aa|down_7|NZ_LM995446.1_49822_50302_+	PRK10769, folA, type 3 dihydrofolate reductase	NA|281aa|down_8|NZ_LM995446.1_50379_51222_-	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|126aa|down_9|NZ_LM995446.1_51228_51606_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_000952955.1_EcRV308Ch	NZ_LM995446	Escherichia coli strain K-12 substr. RV308 chromosome 1	2	374081-374225	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|28aa|up_2|NZ_LM995446.1_371951_372035_+,NA	NA|372aa|up_9|NZ_LM995446.1_366707_367823_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_LM995446.1_367839_368649_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|153aa|up_7|NZ_LM995446.1_368768_369227_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_LM995446.1_369409_369934_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_LM995446.1_369983_370175_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_LM995446.1_370432_371110_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_LM995446.1_371181_371466_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_LM995446.1_371951_372035_+	NA	NA|304aa|up_1|NZ_LM995446.1_372112_373024_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_LM995446.1_373148_374057_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_LM995446.1_374301_375486_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_LM995446.1_375611_378758_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_LM995446.1_378754_379957_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_LM995446.1_380146_380836_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_LM995446.1_380893_382189_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_LM995446.1_382595_383915_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_LM995446.1_383990_385364_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_LM995446.1_385519_387337_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_LM995446.1_387341_387923_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_LM995446.1_388015_389086_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_000952955.1_EcRV308Ch	NZ_LM995446	Escherichia coli strain K-12 substr. RV308 chromosome 1	3	514372-514468	2	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|454aa|up_9|NZ_LM995446.1_502152_503514_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_LM995446.1_503570_504872_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_LM995446.1_504893_506039_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_LM995446.1_506266_507052_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_LM995446.1_507062_508298_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_LM995446.1_508319_509369_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_LM995446.1_509685_511353_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_LM995446.1_511362_512622_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_LM995446.1_512632_513448_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_LM995446.1_513444_514338_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_LM995446.1_514532_515600_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_LM995446.1_515596_516106_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_LM995446.1_516223_516946_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_LM995446.1_516948_517443_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_LM995446.1_517616_519002_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_LM995446.1_519037_519559_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_LM995446.1_519666_519879_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_LM995446.1_519880_520747_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_LM995446.1_521217_521760_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_LM995446.1_521979_522672_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_000952955.1_EcRV308Ch	NZ_LM995446	Escherichia coli strain K-12 substr. RV308 chromosome 1	4	2295258-2295384	3	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|441aa|up_9|NZ_LM995446.1_2272812_2274135_+	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|395aa|up_8|NZ_LM995446.1_2274165_2275350_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_7|NZ_LM995446.1_2275423_2276200_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_6|NZ_LM995446.1_2276204_2277854_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|208aa|up_5|NZ_LM995446.1_2282392_2283016_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_LM995446.1_2283012_2284701_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_LM995446.1_2284849_2287477_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_LM995446.1_2287623_2288346_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_LM995446.1_2288473_2292226_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_LM995446.1_2292921_2295207_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_LM995446.1_2295440_2296571_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_LM995446.1_2296570_2296825_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_LM995446.1_2296878_2297529_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_LM995446.1_2297991_2299068_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_LM995446.1_2299072_2300431_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_LM995446.1_2300703_2302332_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_LM995446.1_2302321_2303581_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_LM995446.1_2303577_2304768_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NZ_LM995446.1_2304960_2305860_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_LM995446.1_2305872_2306058_+	PRK09956, PRK09956, ISNCY family transposase
GCF_000952955.1_EcRV308Ch	NZ_LM995446	Escherichia coli strain K-12 substr. RV308 chromosome 1	5	2820226-2820988	4,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,9	12	TypeI-E	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_LM995446.1_2812037_2812799_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_LM995446.1_2812779_2813829_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_LM995446.1_2813825_2814305_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_LM995446.1_2814304_2815015_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_LM995446.1_2815033_2815345_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_LM995446.1_2815538_2815862_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_LM995446.1_2815911_2816517_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_LM995446.1_2816516_2817944_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_LM995446.1_2817945_2818854_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_LM995446.1_2819105_2820143_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_LM995446.1_2821093_2821378_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_LM995446.1_2821379_2822297_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_LM995446.1_2822312_2822912_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_LM995446.1_2822898_2823573_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_LM995446.1_2823575_2824667_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_LM995446.1_2824679_2825162_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NZ_LM995446.1_2825154_2826663_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_LM995446.1_2827077_2829744_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_LM995446.1_2830102_2830837_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_LM995446.1_2830911_2832624_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_000952955.1_EcRV308Ch	NZ_LM995446	Escherichia coli strain K-12 substr. RV308 chromosome 1	6	2846539-2846932	3,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|47aa|down_1|NZ_LM995446.1_2848081_2848222_+	NA|424aa|up_9|NZ_LM995446.1_2835181_2836453_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_LM995446.1_2836443_2836704_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_LM995446.1_2836720_2837296_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_LM995446.1_2837443_2838304_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_LM995446.1_2838300_2839080_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_LM995446.1_2839057_2840467_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_LM995446.1_2840488_2841943_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_LM995446.1_2842012_2842798_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_LM995446.1_2843116_2844394_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_LM995446.1_2844420_2845899_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_LM995446.1_2847271_2847943_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_LM995446.1_2848081_2848222_+	NA	NA|291aa|down_2|NZ_LM995446.1_2848235_2849108_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_LM995446.1_2849167_2850466_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_LM995446.1_2850553_2852191_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_LM995446.1_2852418_2853210_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_LM995446.1_2853280_2853616_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_LM995446.1_2853615_2853864_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_LM995446.1_2853941_2856176_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_LM995446.1_2856223_2857525_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
