The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	4274782	284242	292759	4274782	transposase	Synechococcus_phage(33.33%)	9	NA	NA
WP_003435056.1|284242_284641_+|transposase	IS200/IS605 family transposase	transposase	A0A0A8WIU6	Clostridium_phage	96.2	2.5e-69
WP_003435058.1|284637_285801_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0A8WI33	Clostridium_phage	99.0	1.7e-219
WP_011860676.1|286055_286568_-	nitroreductase family protein	NA	A0A1V0E011	Clostridioides_phage	87.1	1.0e-83
WP_003425290.1|287017_287494_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.8	6.9e-26
WP_003420966.1|287499_288198_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	43.9	1.5e-45
WP_003425288.1|288209_289577_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.0	2.6e-49
WP_009895312.1|289570_290647_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.2	2.2e-64
WP_003436064.1|290640_291234_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.4	4.3e-25
WP_003436063.1|291226_292759_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	49.7	2.3e-38
>prophage 2
NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	4274782	441066	458627	4274782	transposase	Streptococcus_phage(78.57%)	22	NA	NA
WP_011860752.1|441066_441837_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.5	3.4e-30
WP_011860753.1|442009_442741_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011860754.1|442733_443660_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	44.2	6.9e-46
WP_161792808.1|443729_444644_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_011860756.1|444640_445333_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.9	2.2e-33
WP_011860757.1|445363_445588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003063668.1|445605_445806_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011860758.1|445893_446805_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	52.1	4.5e-82
WP_011860759.1|446820_447828_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	69.6	2.5e-134
WP_011860760.1|447824_450032_-	MFS transporter	NA	A0A1S5SF30	Streptococcus_phage	60.8	1.3e-188
WP_011860761.1|450031_452482_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	75.8	0.0e+00
WP_004843362.1|452459_452858_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	3.2e-48
WP_011860762.1|452971_453475_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	60.2	6.4e-54
WP_011860763.1|453492_453996_-	antirestriction protein	NA	NA	NA	NA	NA
WP_011860764.1|453914_454211_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_002317729.1|454286_454508_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	86.3	1.2e-28
WP_011860765.1|454508_454643_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_113655958.1|454654_455845_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	61.4	5.1e-142
WP_011860767.1|456105_456504_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011860768.1|456515_457886_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	66.2	1.2e-174
WP_042741546.1|457902_458286_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	64.6	2.4e-37
WP_011860770.1|458300_458627_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	66.7	5.6e-35
>prophage 3
NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	4274782	1072797	1108407	4274782	portal,terminase,integrase,tail,capsid	Clostridium_phage(98.11%)	55	1063202:1063217	1083446:1083461
1063202:1063217	attL	ATAGTGCAGAAATAAA	NA	NA	NA	NA
WP_011860983.1|1072797_1073916_-|integrase	site-specific integrase	integrase	X5JB41	Clostridium_phage	100.0	1.1e-207
WP_011860984.1|1074423_1076088_-	DUF4041 domain-containing protein	NA	X5JAC1	Clostridium_phage	96.7	1.7e-191
WP_011860985.1|1076358_1077807_-	SAP domain-containing protein	NA	NA	NA	NA	NA
WP_011860986.1|1078454_1078787_-	helix-turn-helix transcriptional regulator	NA	A0A0A8WJ60	Clostridium_phage	57.1	2.0e-19
WP_011860987.1|1078948_1079137_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011860988.1|1079170_1079965_+	ORF6N domain-containing protein	NA	X5JAW6	Clostridium_phage	90.9	1.8e-127
WP_011860989.1|1080026_1080227_+	hypothetical protein	NA	X5JAW7	Clostridium_phage	95.1	3.8e-26
WP_022583275.1|1080265_1080835_-	hypothetical protein	NA	X5JB43	Clostridium_phage	96.8	2.5e-99
WP_011860991.1|1080904_1081102_+	helix-turn-helix transcriptional regulator	NA	A0A0A8WJU5	Clostridium_phage	98.5	9.5e-30
WP_011860992.1|1081118_1081448_+	helix-turn-helix domain-containing protein	NA	X5JA04	Clostridium_phage	99.1	6.6e-52
WP_011860993.1|1081549_1081738_+	hypothetical protein	NA	A0A090EUJ0	Clostridium_phage	95.2	2.5e-24
WP_022583264.1|1081753_1081966_+	hypothetical protein	NA	A0A0A8WJ12	Clostridium_phage	82.6	1.2e-25
WP_011860995.1|1082064_1082307_+	hypothetical protein	NA	A0A0A8WFK1	Clostridium_phage	95.0	1.9e-35
WP_011860996.1|1082390_1082906_+	siphovirus Gp157 family protein	NA	A0A0A8WJQ2	Clostridium_phage	97.0	1.5e-82
WP_011860997.1|1082907_1083810_+	phage recombination protein Bet	NA	A8ATK8	Listeria_phage	46.7	5.5e-40
1083446:1083461	attR	ATAGTGCAGAAATAAA	NA	NA	NA	NA
WP_011860998.1|1083822_1084662_+	hypothetical protein	NA	A0A0A8WI94	Clostridium_phage	60.9	1.5e-79
WP_011860999.1|1084732_1084987_+	hypothetical protein	NA	Q24LE4	Clostridium_phage	100.0	5.5e-46
WP_011861000.1|1085060_1085324_+	hypothetical protein	NA	Q24LE3	Clostridium_phage	98.9	4.5e-43
WP_011861001.1|1085335_1085686_+	hypothetical protein	NA	Q24LE2	Clostridium_phage	100.0	3.6e-64
WP_011861002.1|1085689_1086070_+	hypothetical protein	NA	X5JAK1	Clostridium_phage	95.2	2.0e-60
WP_011861004.1|1086174_1086333_+	hypothetical protein	NA	X5JB46	Clostridium_phage	100.0	3.9e-18
WP_011861005.1|1086329_1086503_+	DUF3797 domain-containing protein	NA	Q24LE0	Clostridium_phage	100.0	1.9e-29
WP_011861007.1|1086620_1086956_+	hypothetical protein	NA	X5JAK2	Clostridium_phage	100.0	4.2e-62
WP_011861008.1|1087055_1087331_+	hypothetical protein	NA	X5JAX1	Clostridium_phage	92.3	1.2e-41
WP_011861009.1|1087426_1088500_+	DNA (cytosine-5-)-methyltransferase	NA	A0A0A8WIK9	Clostridium_phage	100.0	3.9e-210
WP_011861010.1|1088579_1088789_+	hypothetical protein	NA	J9QEC7	Clostridium_phage	100.0	3.5e-30
WP_011861011.1|1088800_1089796_+	nucleoid-associated protein	NA	A0A0A8WG36	Clostridium_phage	82.0	1.3e-151
WP_011861012.1|1089804_1090530_+	phosphoadenosine phosphosulfate reductase family protein	NA	Q24LD4	Clostridium_phage	99.1	2.4e-131
WP_011861014.1|1090692_1091064_+	hypothetical protein	NA	Q24LD2	Clostridium_phage	100.0	9.1e-66
WP_011861015.1|1091066_1091534_+	hypothetical protein	NA	Q24LD1	Clostridium_phage	100.0	4.8e-72
WP_011861016.1|1091612_1091798_+	hypothetical protein	NA	Q24LD0	Clostridium_phage	100.0	5.4e-27
WP_015981545.1|1091811_1092051_+	hypothetical protein	NA	Q24LC9	Clostridium_phage	100.0	1.0e-41
WP_011861019.1|1092179_1092986_+	DNA adenine methylase	NA	Q24LC8	Clostridium_phage	100.0	1.3e-157
WP_011861020.1|1092999_1093407_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0A8WIA1	Clostridium_phage	85.9	3.3e-61
WP_011861021.1|1093421_1094147_+	phage antirepressor Ant	NA	A0A090DCZ8	Clostridium_phage	99.6	1.3e-129
WP_011861022.1|1094240_1094729_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	100.0	6.1e-86
WP_009894741.1|1095649_1096261_+	hypothetical protein	NA	A0A0A8WFI2	Clostridium_phage	100.0	6.9e-111
WP_009894742.1|1096337_1096526_+	hypothetical protein	NA	A0A0A8WIH0	Clostridium_phage	100.0	3.2e-27
WP_009894743.1|1096505_1096823_-	hypothetical protein	NA	A0A0A8WJ81	Clostridium_phage	100.0	5.2e-54
WP_009894744.1|1096946_1097174_+	hypothetical protein	NA	A0A0A8WFZ2	Clostridium_phage	100.0	2.1e-36
WP_011861025.1|1097243_1097936_+	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	94.3	2.5e-117
WP_003433530.1|1097913_1099167_+|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	99.0	3.0e-246
WP_011861027.1|1099172_1100612_+|portal	phage portal protein	portal	A0A0A8WFC0	Clostridium_phage	99.6	1.2e-278
WP_003429838.1|1100601_1102095_+|capsid	minor capsid protein	capsid	X5JAI9	Clostridium_phage	96.8	1.1e-284
WP_009901430.1|1102060_1102303_+	hypothetical protein	NA	X5JAV8	Clostridium_phage	100.0	3.4e-37
WP_011861028.1|1102612_1103176_+	scaffold protein	NA	X5JAB4	Clostridium_phage	89.8	1.0e-84
WP_011861029.1|1103187_1104087_+|capsid	phage capsid protein	capsid	A0A0A8WFI8	Clostridium_phage	99.7	1.4e-168
WP_009896624.1|1104086_1104320_+	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	97.4	1.4e-32
WP_009888836.1|1104329_1104731_+	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
WP_003429844.1|1104724_1105072_+	hypothetical protein	NA	X5JAV9	Clostridium_phage	100.0	5.0e-58
WP_011861030.1|1105071_1105497_+	HK97 gp10 family phage protein	NA	X5JB35	Clostridium_phage	97.2	3.6e-74
WP_009901504.1|1105489_1105927_+	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.9	1.1e-75
WP_011861032.1|1106097_1107408_+	hypothetical protein	NA	X5JAJ1	Clostridium_phage	92.4	9.9e-232
WP_003429851.1|1107424_1107895_+|tail	phage tail tube protein	tail	A0A0A8WJ62	Clostridium_phage	82.1	7.0e-71
WP_003429853.1|1107966_1108407_+|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
>prophage 4
NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	4274782	1111817	1128312	4274782	plate,holin,tail	Clostridium_phage(95.24%)	21	NA	NA
WP_011861036.1|1111817_1114169_+	tape measure protein	NA	X5JAB7	Clostridium_phage	61.8	3.1e-252
WP_011861037.1|1114184_1114874_+	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	95.2	4.1e-120
WP_011861038.1|1114866_1116837_+	cell wall hydrolase	NA	A0A0A8WIF2	Clostridium_phage	86.5	0.0e+00
WP_009901352.1|1116850_1117111_+	DUF2577 domain-containing protein	NA	A3QSB4	Clostridium_virus	100.0	1.7e-39
WP_011861039.1|1117115_1117535_+	DUF2634 domain-containing protein	NA	X5JB38	Clostridium_phage	97.8	2.5e-72
WP_011861040.1|1117535_1118585_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFK0	Clostridium_phage	97.1	7.5e-190
WP_011861041.1|1118577_1119195_+	YmfQ family protein	NA	A0A0A8WFE8	Clostridium_phage	98.0	1.0e-114
WP_011861042.1|1119206_1120010_+|tail	phage tail protein	tail	X5JAJ4	Clostridium_phage	97.4	3.4e-126
WP_021413561.1|1120027_1121725_+	glycine rich family protein	NA	X5JAW3	Clostridium_phage	82.5	3.7e-231
WP_011861044.1|1121741_1122035_+	hypothetical protein	NA	A0A0A8WIP3	Clostridium_phage	94.8	1.7e-46
WP_011861045.1|1122034_1122217_+	hypothetical protein	NA	A0A090D845	Clostridium_phage	93.2	1.0e-22
WP_011861046.1|1122251_1122482_+	membrane protein	NA	A0A0A8WJM3	Clostridium_phage	100.0	1.8e-32
WP_011861047.1|1122501_1122762_+|holin	holin	holin	A0A0K2SUI8	Clostridium_phage	96.5	3.2e-41
WP_011861048.1|1122758_1123574_+	N-acetylmuramoyl-L-alanine amidase	NA	Q24LG3	Clostridium_phage	97.4	2.4e-151
WP_011861049.1|1123590_1123887_+	hypothetical protein	NA	Q24LG2	Clostridium_phage	100.0	7.3e-50
WP_011861051.1|1124399_1124996_+	hypothetical protein	NA	Q24LG1	Clostridium_phage	99.5	1.8e-95
WP_011861052.1|1125013_1125445_+	hypothetical protein	NA	Q24LG0	Clostridium_phage	100.0	1.9e-75
WP_011861732.1|1125446_1126151_+	hypothetical protein	NA	Q24LF8	Clostridium_phage	98.5	1.5e-69
WP_009898401.1|1126398_1126587_-	hypothetical protein	NA	A0A0A8WJ69	Clostridium_phage	100.0	3.1e-30
WP_009898394.1|1127604_1127886_+	phage regulatory protein	NA	Q24LF7	Clostridium_phage	100.0	6.3e-43
WP_011861055.1|1127925_1128312_+	transcriptional regulator	NA	X5JAW5	Clostridium_phage	99.2	2.5e-66
>prophage 5
NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	4274782	1506816	1581008	4274782	transposase,plate,protease,portal,tRNA,integrase,tail	Clostridium_phage(42.86%)	69	1506039:1506057	1582485:1582503
1506039:1506057	attL	TGAAATGGCAAAAAATTTA	NA	NA	NA	NA
WP_011861173.1|1506816_1507935_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A0H3UZC2	Geobacillus_virus	53.3	2.4e-109
WP_003428232.1|1508370_1509276_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_003438310.1|1509406_1510336_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_003419491.1|1510439_1510697_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_009889099.1|1510936_1511782_+	DegV family protein	NA	NA	NA	NA	NA
WP_003438316.1|1511906_1514018_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003438319.1|1514285_1515029_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_003438321.1|1515186_1516434_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	35.1	5.1e-52
WP_003419503.1|1516468_1516714_+	YlmC/YmxH family sporulation protein	NA	NA	NA	NA	NA
WP_003438324.1|1516723_1517947_+	aspartate kinase	NA	NA	NA	NA	NA
WP_003428224.1|1518059_1518794_+|protease	Clp protease	protease	NA	NA	NA	NA
WP_003438328.1|1518916_1521328_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.4	3.3e-92
WP_011861175.1|1521330_1522389_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_011861176.1|1522382_1523717_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_009889106.1|1523703_1524246_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003428218.1|1524533_1525580_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.5	2.7e-123
WP_003428216.1|1525755_1527297_+	ribonuclease Y	NA	NA	NA	NA	NA
WP_011861177.1|1527931_1529713_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_011861178.1|1529794_1530325_-	signal peptidase I	NA	NA	NA	NA	NA
WP_009905410.1|1530364_1531189_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_009889110.1|1531445_1532354_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_003438353.1|1532497_1533943_+	adenylosuccinate lyase	NA	NA	NA	NA	NA
WP_003419561.1|1534253_1534706_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011861179.1|1535117_1536695_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_009892977.1|1536842_1537595_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011861180.1|1537733_1539074_+	6-phospho-alpha-glucosidase	NA	NA	NA	NA	NA
WP_003438357.1|1539185_1540382_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_003438360.1|1540766_1541717_+	galactose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003438367.1|1541876_1542629_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	45.6	1.9e-57
WP_016729594.1|1542720_1543497_-	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003428202.1|1543811_1545710_+	glutamine synthetase	NA	NA	NA	NA	NA
WP_003438374.1|1545837_1546959_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
WP_009889116.1|1547157_1547490_+	PadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011861182.1|1547476_1548559_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_011861183.1|1548551_1549622_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_003428196.1|1549723_1550260_+	lipoprotein	NA	NA	NA	NA	NA
WP_009896245.1|1550375_1551083_+	lantibiotic protection ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	48.5	1.2e-55
WP_009896246.1|1551084_1551801_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA	NA
WP_011861184.1|1551802_1552561_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA	NA
WP_011861185.1|1552695_1554084_+	two-component system sensor histidine kinase	NA	NA	NA	NA	NA
WP_003428191.1|1554159_1554981_-	pyridoxamine kinase	NA	NA	NA	NA	NA
WP_009902426.1|1555231_1556386_+	amidase domain-containing protein	NA	NA	NA	NA	NA
WP_003419624.1|1556568_1556769_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	66.2	2.7e-16
WP_009889129.1|1557189_1557618_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_009889131.1|1557760_1558516_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_011861186.1|1559216_1559723_-	hypothetical protein	NA	A0A0A8WEK1	Clostridium_phage	66.5	1.5e-55
WP_003428185.1|1559804_1560125_-	XRE family transcriptional regulator	NA	A0A0A8WE28	Clostridium_phage	54.5	3.7e-23
WP_011861187.1|1560293_1560491_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003428183.1|1560595_1561036_+	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	51.4	6.0e-32
WP_009896258.1|1561284_1561728_+	hypothetical protein	NA	A0A1V0DZX9	Clostridioides_phage	35.4	1.3e-18
WP_011861188.1|1561732_1562797_+|portal	phage portal protein	portal	A0A1V0DZX4	Clostridioides_phage	53.1	4.4e-97
WP_003419646.1|1562810_1563239_+|tail	phage tail tube protein	tail	A0A1V0DZX1	Clostridioides_phage	51.8	2.8e-34
WP_009902432.1|1563364_1563811_+|portal	phage portal protein	portal	A0A0A7RTP2	Clostridium_phage	36.4	1.1e-12
WP_003438437.1|1564004_1566458_+	hypothetical protein	NA	A0A1V0DZX3	Clostridioides_phage	55.7	6.1e-17
WP_003428168.1|1566457_1566880_+	hypothetical protein	NA	A0A090DBR9	Clostridium_phage	71.1	1.7e-52
WP_009889145.1|1567161_1568691_+	cell wall XkdQ hydrolase	NA	A0A1V0DZX6	Clostridioides_phage	81.1	1.0e-243
WP_003438447.1|1568706_1569033_+	DUF2577 domain-containing protein	NA	J9QE86	Clostridium_phage	94.4	1.0e-52
WP_003438449.1|1569032_1569461_+	DUF2634 domain-containing protein	NA	A0A0A8WJ32	Clostridium_phage	82.4	4.4e-64
WP_003438450.1|1569453_1570506_+|plate	baseplate J/gp47 family protein	plate	A0A0A8WFP3	Clostridium_phage	71.0	2.7e-139
WP_003428156.1|1570502_1571201_+	DUF2313 domain-containing protein	NA	A0A090D815	Clostridium_phage	56.9	5.5e-48
WP_009902440.1|1571201_1572188_+|tail	phage tail protein	tail	A0A2H4J039	uncultured_Caudovirales_phage	45.8	3.4e-59
WP_011861189.1|1572209_1577441_+	chromosome condensation regulator	NA	A0A0A8WEY5	Clostridium_phage	31.1	1.2e-81
WP_009902444.1|1577457_1577811_+	hypothetical protein	NA	A0A0A8WJF2	Clostridium_phage	42.1	9.4e-12
WP_003419670.1|1578073_1578334_+	hypothetical protein	NA	E2ELK7	Clostridium_phage	90.6	9.9e-35
WP_003419674.1|1578541_1578997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003438466.1|1579224_1579644_-	helix-turn-helix transcriptional regulator	NA	S5MUV6	Brevibacillus_phage	37.2	5.4e-06
WP_003428146.1|1579942_1580152_+	helix-turn-helix transcriptional regulator	NA	Q5YAA3	Bacillus_phage	47.2	5.9e-06
WP_009889160.1|1580183_1580393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003428144.1|1580609_1581008_-	helix-turn-helix domain-containing protein	NA	A0A1L2JY18	Aeribacillus_phage	29.7	2.7e-07
1582485:1582503	attR	TAAATTTTTTGCCATTTCA	NA	NA	NA	NA
>prophage 6
NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	4274782	1660770	1670497	4274782		Pandoravirus(37.5%)	11	NA	NA
WP_011861216.1|1660770_1661355_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	53.2	8.4e-58
WP_021359151.1|1661356_1662706_+	aminodeoxychorismate synthase component I	NA	S4VNU7	Pandoravirus	41.2	6.5e-37
WP_003438634.1|1662695_1663439_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_009896367.1|1663472_1664174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003429416.1|1664199_1664772_+	GTP cyclohydrolase I FolE	NA	E7DN69	Pneumococcus_phage	51.6	3.0e-44
WP_003438639.1|1664835_1665627_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	28.8	1.1e-23
WP_011861219.1|1665637_1666003_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_003438641.1|1665995_1666502_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	S4VNV0	Pandoravirus	35.2	1.2e-12
WP_003419887.1|1666482_1667268_+	3-deoxy-7-phosphoheptulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	27.9	1.7e-13
WP_009896376.1|1667522_1669313_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	32.6	1.2e-51
WP_003429425.1|1669330_1670497_+	RNA polymerase sigma factor RpoD	NA	M4SMP8	Cyanophage	36.8	9.6e-37
>prophage 7
NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	4274782	3203501	3212454	4274782		Catovirus(50.0%)	8	NA	NA
WP_009897930.1|3203501_3205415_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.8	1.1e-26
WP_003431768.1|3205498_3206590_-	glycosyltransferase	NA	A0A1V0SL50	Klosneuvirus	26.2	1.8e-16
WP_011861675.1|3206595_3207891_-	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	43.6	2.9e-90
WP_003426498.1|3207916_3208669_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	40.5	4.6e-16
WP_004454111.1|3208716_3209625_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003422862.1|3209646_3210396_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	38.8	1.2e-16
WP_009891031.1|3210424_3211600_-	glycerophosphotransferase	NA	NA	NA	NA	NA
WP_009897935.1|3211614_3212454_-	glycosyltransferase family 2 protein	NA	A0A2P1ELT8	Moumouvirus	26.3	7.0e-05
>prophage 8
NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	4274782	3365206	3413387	4274782	plate,portal,holin,terminase,tail,capsid	Clostridium_phage(83.33%)	69	NA	NA
WP_009898401.1|3365206_3365395_+	hypothetical protein	NA	A0A0A8WJ69	Clostridium_phage	100.0	3.1e-30
WP_011861732.1|3365641_3366346_-	hypothetical protein	NA	Q24LF8	Clostridium_phage	98.5	1.5e-69
WP_011861052.1|3366347_3366779_-	hypothetical protein	NA	Q24LG0	Clostridium_phage	100.0	1.9e-75
WP_011861051.1|3366796_3367393_-	hypothetical protein	NA	Q24LG1	Clostridium_phage	99.5	1.8e-95
WP_011861049.1|3367905_3368202_-	hypothetical protein	NA	Q24LG2	Clostridium_phage	100.0	7.3e-50
WP_011861048.1|3368218_3369034_-	N-acetylmuramoyl-L-alanine amidase	NA	Q24LG3	Clostridium_phage	97.4	2.4e-151
WP_011861047.1|3369030_3369291_-|holin	holin	holin	A0A0K2SUI8	Clostridium_phage	96.5	3.2e-41
WP_011861046.1|3369310_3369541_-	membrane protein	NA	A0A0A8WJM3	Clostridium_phage	100.0	1.8e-32
WP_011861045.1|3369575_3369758_-	hypothetical protein	NA	A0A090D845	Clostridium_phage	93.2	1.0e-22
WP_011861044.1|3369757_3370051_-	hypothetical protein	NA	A0A0A8WIP3	Clostridium_phage	94.8	1.7e-46
WP_021413561.1|3370067_3371765_-	glycine rich family protein	NA	X5JAW3	Clostridium_phage	82.5	3.7e-231
WP_011861042.1|3371782_3372586_-|tail	phage tail protein	tail	X5JAJ4	Clostridium_phage	97.4	3.4e-126
WP_011861041.1|3372597_3373215_-	YmfQ family protein	NA	A0A0A8WFE8	Clostridium_phage	98.0	1.0e-114
WP_011861040.1|3373207_3374257_-|plate	baseplate J/gp47 family protein	plate	A0A0A8WFK0	Clostridium_phage	97.1	7.5e-190
WP_011861039.1|3374257_3374677_-	DUF2634 domain-containing protein	NA	X5JB38	Clostridium_phage	97.8	2.5e-72
WP_009901352.1|3374681_3374942_-	DUF2577 domain-containing protein	NA	A3QSB4	Clostridium_virus	100.0	1.7e-39
WP_011861038.1|3374955_3376926_-	cell wall hydrolase	NA	A0A0A8WIF2	Clostridium_phage	86.5	0.0e+00
WP_011861037.1|3376918_3377608_-	LysM peptidoglycan-binding domain-containing protein	NA	X5J9Z8	Clostridium_phage	95.2	4.1e-120
WP_011861036.1|3377623_3379975_-	tape measure protein	NA	X5JAB7	Clostridium_phage	61.8	3.1e-252
WP_011861035.1|3380045_3380615_-	zinc-ribbon domain-containing protein	NA	A0A0A8WFW4	Clostridium_phage	37.4	1.5e-27
WP_011861034.1|3380658_3381219_-	lipoprotein	NA	NA	NA	NA	NA
WP_003429853.1|3383384_3383825_-|portal	phage portal protein	portal	X5JAB6	Clostridium_phage	63.7	8.6e-47
WP_003429851.1|3383896_3384367_-|tail	phage tail tube protein	tail	A0A0A8WJ62	Clostridium_phage	82.1	7.0e-71
WP_011861032.1|3384383_3385694_-	hypothetical protein	NA	X5JAJ1	Clostridium_phage	92.4	9.9e-232
WP_009901504.1|3385864_3386302_-	hypothetical protein	NA	A0A0A8WJT3	Clostridium_phage	95.9	1.1e-75
WP_011861030.1|3386294_3386720_-	HK97 gp10 family phage protein	NA	X5JB35	Clostridium_phage	97.2	3.6e-74
WP_003429844.1|3386719_3387067_-	hypothetical protein	NA	X5JAV9	Clostridium_phage	100.0	5.0e-58
WP_009888836.1|3387060_3387462_-	hypothetical protein	NA	X5JAJ0	Clostridium_phage	97.0	8.1e-68
WP_009896624.1|3387471_3387705_-	hypothetical protein	NA	A0A0A8WFD0	Clostridium_phage	97.4	1.4e-32
WP_011861029.1|3387704_3388604_-|capsid	phage capsid protein	capsid	A0A0A8WFI8	Clostridium_phage	99.7	1.4e-168
WP_011861028.1|3388615_3389179_-	scaffold protein	NA	X5JAB4	Clostridium_phage	89.8	1.0e-84
WP_009901430.1|3389488_3389731_-	hypothetical protein	NA	X5JAV8	Clostridium_phage	100.0	3.4e-37
WP_003429838.1|3389696_3391190_-|capsid	minor capsid protein	capsid	X5JAI9	Clostridium_phage	96.8	1.1e-284
WP_011861027.1|3391179_3392619_-|portal	phage portal protein	portal	A0A0A8WFC0	Clostridium_phage	99.6	1.2e-278
WP_003433530.1|3392624_3393878_-|terminase	PBSX family phage terminase large subunit	terminase	X5JAB3	Clostridium_phage	99.0	3.0e-246
WP_011861025.1|3393855_3394548_-	helix-turn-helix domain-containing protein	NA	A0A0A8WFS6	Clostridium_phage	94.3	2.5e-117
WP_009894744.1|3394617_3394845_-	hypothetical protein	NA	A0A0A8WFZ2	Clostridium_phage	100.0	2.1e-36
WP_009894743.1|3394968_3395286_+	hypothetical protein	NA	A0A0A8WJ81	Clostridium_phage	100.0	5.2e-54
WP_009894742.1|3395265_3395454_-	hypothetical protein	NA	A0A0A8WIH0	Clostridium_phage	100.0	3.2e-27
WP_009894741.1|3395530_3396142_-	hypothetical protein	NA	A0A0A8WFI2	Clostridium_phage	100.0	6.9e-111
WP_032506905.1|3397133_3398297_-	ImmA/IrrE family metallo-endopeptidase	NA	B6SBZ6	Clostridium_virus	97.4	1.2e-212
WP_011861735.1|3398315_3399071_-	hypothetical protein	NA	B6SBZ5	Clostridium_virus	96.0	4.3e-131
WP_011861022.1|3399391_3399880_-	hypothetical protein	NA	A0A090EUN5	Clostridium_phage	100.0	6.1e-86
WP_011861736.1|3399973_3400714_-	anti-repressor protein	NA	A0A090DCZ8	Clostridium_phage	57.9	7.9e-69
WP_011861737.1|3400776_3401184_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0A8WIA1	Clostridium_phage	89.6	5.1e-62
WP_011861738.1|3401173_3401572_-	hypothetical protein	NA	A0A0A8WEK3	Clostridium_phage	75.0	1.8e-51
WP_011861739.1|3401714_3402041_-	peptide chain release factor-like protein	NA	A0A090D894	Clostridium_phage	94.7	2.3e-52
WP_011861740.1|3402111_3402483_-	hypothetical protein	NA	A0A0A8WJ20	Clostridium_phage	86.0	2.2e-56
WP_161807964.1|3402657_3402978_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_011861743.1|3403052_3404048_-	nucleoid-associated protein	NA	J9QE81	Clostridium_phage	82.3	9.1e-153
WP_011861744.1|3404142_3404418_-	hypothetical protein	NA	X5JAX1	Clostridium_phage	100.0	1.1e-44
WP_018112752.1|3404469_3404628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021359693.1|3404746_3404920_-	DUF3797 domain-containing protein	NA	Q24LE0	Clostridium_phage	96.5	9.2e-29
WP_011861745.1|3405025_3405406_-	hypothetical protein	NA	X5JAK1	Clostridium_phage	92.1	1.6e-57
WP_021398171.1|3405409_3405775_-	hypothetical protein	NA	Q24LE2	Clostridium_phage	96.7	7.1e-63
WP_011861747.1|3405771_3406035_-	hypothetical protein	NA	Q24LE3	Clostridium_phage	97.7	1.3e-42
WP_011861748.1|3406108_3406525_-	single-stranded DNA-binding protein	NA	A0A0A8WJ76	Clostridium_phage	100.0	1.9e-75
WP_011861749.1|3406540_3406714_-	resolvase	NA	A0A090EUJ6	Clostridium_phage	100.0	5.8e-23
WP_011861750.1|3406773_3407724_-	DnaD domain protein	NA	B6SBX9	Clostridium_virus	95.9	2.9e-156
WP_011861751.1|3407732_3408323_-	essential recombination function protein	NA	A0A0A8WJU6	Clostridium_phage	98.4	6.2e-101
WP_011861752.1|3408332_3408842_-	siphovirus Gp157 family protein	NA	A0A0A8WFY3	Clostridium_phage	95.9	1.1e-80
WP_011861753.1|3408927_3409245_-	hypothetical protein	NA	B6SBX6	Clostridium_virus	100.0	1.1e-24
WP_011861754.1|3409344_3409563_-	hypothetical protein	NA	B6SBX5	Clostridium_virus	98.2	2.0e-25
WP_011861755.1|3409546_3409735_-	hypothetical protein	NA	B6SBX4	Clostridium_virus	100.0	2.9e-28
WP_011861756.1|3409800_3410595_-	ORF6N domain-containing protein	NA	X5JAW6	Clostridium_phage	92.7	4.9e-133
WP_011861757.1|3410642_3410864_-	helix-turn-helix transcriptional regulator	NA	B6SBW9	Clostridium_virus	100.0	1.8e-32
WP_011861758.1|3411017_3411473_+	helix-turn-helix transcriptional regulator	NA	B6SBW8	Clostridium_virus	100.0	9.4e-81
WP_011861759.1|3411490_3411964_+	ImmA/IrrE family metallo-endopeptidase	NA	B6SBW7	Clostridium_virus	100.0	1.1e-84
WP_011861760.1|3412028_3413387_+	recombinase family protein	NA	B6SBW6	Clostridium_virus	100.0	1.6e-213
>prophage 9
NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	4274782	3882030	3900869	4274782	transposase	Streptococcus_phage(78.57%)	18	NA	NA
WP_011861915.1|3882030_3882939_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	66.4	1.4e-112
WP_011861916.1|3882955_3883960_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	80.2	2.0e-139
WP_044337411.1|3883956_3886320_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	76.3	3.2e-220
WP_011861918.1|3886334_3888788_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	87.5	0.0e+00
WP_005427021.1|3888771_3889164_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	80.0	1.2e-55
WP_029677135.1|3889253_3889742_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	73.9	3.7e-67
WP_022621533.1|3890194_3890338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011861920.1|3890334_3890841_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_002570387.1|3891026_3891248_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	90.4	1.4e-29
WP_044336937.1|3891299_3892523_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	78.5	8.2e-188
WP_011861922.1|3892674_3894072_-	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	76.8	3.8e-205
WP_011861923.1|3894107_3894485_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	80.5	1.8e-48
WP_002578441.1|3894506_3894821_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	91.3	1.7e-49
WP_011861924.1|3895077_3895752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011861925.1|3895752_3896646_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_011861926.1|3896844_3898830_-	collagen-like exosporium glycoprotein BclA3	NA	A0A285PXU9	Cedratvirus	67.1	4.5e-42
WP_009898508.1|3898896_3899973_-	glycosyltransferase family 2 protein	NA	A0A1V0SAJ8	Catovirus	25.3	1.3e-16
WP_003436212.1|3900284_3900869_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	51.3	3.6e-48
>prophage 10
NZ_CP010905	Clostridioides difficile 630 chromosome, complete genome	4274782	3939497	3948490	4274782	transposase	Streptococcus_phage(100.0%)	11	NA	NA
WP_011861947.1|3939497_3941948_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
WP_011861948.1|3941925_3942324_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	73.0	2.4e-48
WP_011861949.1|3942441_3942945_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	59.6	3.7e-54
WP_011861950.1|3942962_3943466_-	antirestriction protein	NA	NA	NA	NA	NA
WP_011861951.1|3943384_3943681_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_011861952.1|3943763_3944573_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009265886.1|3944611_3944833_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	1.2e-28
WP_011861953.1|3944979_3946170_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	63.1	1.1e-149
WP_011861954.1|3946353_3947748_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	65.9	4.6e-179
WP_011861955.1|3947764_3948148_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	55.1	1.2e-31
WP_011861956.1|3948163_3948490_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	53.4	3.6e-26
