assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000931565.1_ASM93156v1	NZ_CP010876	Escherichia coli strain MNCRE44 chromosome, complete genome	1	762718-762859	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,RT,c2c9_V-U4,csa3	Orphan	GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,RT,c2c9_V-U4,csa3	NA|36aa|up_4|NZ_CP010876.1_758939_759047_-,NA	NA|399aa|up_9|NZ_CP010876.1_753380_754577_+	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus	NA|323aa|up_8|NZ_CP010876.1_754604_755573_+	cd13669, PBP2_TRAP_TM0322_like, Periplasmic component of TRAP-type C4-dicarboxylate transport system TM0322 from Thermotoga maritima and similar proteins; the type 2 periplasmic binding protein fold	NA|154aa|up_7|NZ_CP010876.1_755632_756094_+	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism]	NA|437aa|up_6|NZ_CP010876.1_756093_757404_+	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|428aa|up_5|NZ_CP010876.1_757450_758734_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NZ_CP010876.1_758939_759047_-	NA	NA|135aa|up_3|NZ_CP010876.1_759427_759832_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NZ_CP010876.1_759825_760173_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NZ_CP010876.1_760172_761939_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NZ_CP010876.1_761954_762671_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NZ_CP010876.1_763032_765834_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NZ_CP010876.1_765848_767066_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NZ_CP010876.1_767159_768326_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NZ_CP010876.1_768325_769195_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|241aa|down_4|NZ_CP010876.1_769298_770021_-	PRK09764, PRK09764, GntR family transcriptional regulator	NA|639aa|down_5|NZ_CP010876.1_770189_772106_+	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional	NA|878aa|down_6|NZ_CP010876.1_772123_774757_+	PRK09819, PRK09819, mannosylglycerate hydrolase	NA|398aa|down_7|NZ_CP010876.1_774954_776148_+	sd00006, TPR, Tetratricopeptide repeat	NA|523aa|down_8|NZ_CP010876.1_777690_779259_+	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|380aa|down_9|NZ_CP010876.1_779274_780414_+	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II
GCF_000931565.1_ASM93156v1	NZ_CP010876	Escherichia coli strain MNCRE44 chromosome, complete genome	2	928925-929007	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,RT,c2c9_V-U4,csa3	Orphan	AGTTCACTGCCGTACAGGCAGCT	23	0	0	NA	NA	I-F	1	1	Orphan	DEDDh,DinG,cas3,RT,c2c9_V-U4,csa3	NA,NA	NA|551aa|up_9|NZ_CP010876.1_915415_917068_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP010876.1_917211_918111_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP010876.1_918525_919221_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP010876.1_919645_921304_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP010876.1_921300_922257_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP010876.1_922407_923523_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP010876.1_923519_925466_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP010876.1_925538_925763_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP010876.1_926085_926406_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP010876.1_926436_928713_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP010876.1_929397_929616_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP010876.1_929900_930605_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP010876.1_930646_932368_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP010876.1_932368_934135_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP010876.1_934257_935223_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP010876.1_935766_936261_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1369aa|down_6|NZ_CP010876.1_936395_940502_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP010876.1_940660_941272_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP010876.1_941282_942626_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP010876.1_942716_944009_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_000931565.1_ASM93156v1	NZ_CP010876	Escherichia coli strain MNCRE44 chromosome, complete genome	3	2646283-2646371	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,RT,c2c9_V-U4,csa3	Orphan	CGTTGGACAACCGTTGGACAATC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,RT,c2c9_V-U4,csa3	NA|71aa|up_7|NZ_CP010876.1_2641945_2642158_-,NA|109aa|up_1|NZ_CP010876.1_2644047_2644374_-,NA|54aa|down_0|NZ_CP010876.1_2646752_2646914_-,NA|135aa|down_4|NZ_CP010876.1_2648294_2648699_+,NA|108aa|down_6|NZ_CP010876.1_2649338_2649662_+	NA|175aa|up_9|NZ_CP010876.1_2641141_2641666_-	pfam13392, HNH_3, HNH endonuclease	NA|97aa|up_8|NZ_CP010876.1_2641662_2641953_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|71aa|up_7|NZ_CP010876.1_2641945_2642158_-	NA	NA|57aa|up_6|NZ_CP010876.1_2642150_2642321_-	pfam05810, NinF, NinF protein	NA|62aa|up_5|NZ_CP010876.1_2642680_2642866_-	pfam05810, NinF, NinF protein	NA|120aa|up_4|NZ_CP010876.1_2642858_2643218_-	pfam10765, DUF2591, Protein of unknown function (DUF2591)	NA|59aa|up_3|NZ_CP010876.1_2643220_2643397_-	pfam05322, NinE, NINE Protein	NA|147aa|up_2|NZ_CP010876.1_2643393_2643834_-	pfam05772, NinB, NinB protein	NA|109aa|up_1|NZ_CP010876.1_2644047_2644374_-	NA	NA|479aa|up_0|NZ_CP010876.1_2644449_2645886_-	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|54aa|down_0|NZ_CP010876.1_2646752_2646914_-	NA	NA|93aa|down_1|NZ_CP010876.1_2646948_2647227_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|72aa|down_2|NZ_CP010876.1_2647346_2647562_-	pfam01381, HTH_3, Helix-turn-helix	NA|211aa|down_3|NZ_CP010876.1_2647665_2648298_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|135aa|down_4|NZ_CP010876.1_2648294_2648699_+	NA	NA|127aa|down_5|NZ_CP010876.1_2648949_2649330_+	pfam11438, N36, 36-mer N-terminal peptide of the N protein (N36)	NA|108aa|down_6|NZ_CP010876.1_2649338_2649662_+	NA	NA|123aa|down_7|NZ_CP010876.1_2649842_2650211_+	pfam10800, DUF2528, Protein of unknown function (DUF2528)	NA|323aa|down_8|NZ_CP010876.1_2650245_2651214_+	PTZ00121, PTZ00121, MAEBL; Provisional	NA|44aa|down_9|NZ_CP010876.1_2651238_2651370_+	pfam02061, Lambda_CIII, Lambda Phage CIII
