assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	1	28127-28218	1	CRISPRCasFinder	no		RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Orphan	TCGTAGTGCTTTTTTATTATATGG	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA,NA|486aa|down_8|NZ_CP010525.1_36522_37980_+	NA|398aa|up_9|NZ_CP010525.1_17920_19114_+	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|157aa|up_8|NZ_CP010525.1_19126_19597_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|96aa|up_7|NZ_CP010525.1_19850_20138_+	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|165aa|up_6|NZ_CP010525.1_20199_20694_+	PRK06751, PRK06751, single-stranded DNA-binding protein; Provisional	NA|80aa|up_5|NZ_CP010525.1_20738_20978_+	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|314aa|up_4|NZ_CP010525.1_21135_22077_+	pfam09991, DUF2232, Predicted membrane protein (DUF2232)	NA|658aa|up_3|NZ_CP010525.1_22112_24086_+	COG3887, COG3887, Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	NA|148aa|up_2|NZ_CP010525.1_24082_24526_+	PRK00137, rplI, 50S ribosomal protein L9; Reviewed	NA|452aa|up_1|NZ_CP010525.1_24745_26101_+	PRK05748, PRK05748, replicative DNA helicase; Provisional	NA|430aa|up_0|NZ_CP010525.1_26275_27565_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|237aa|down_0|NZ_CP010525.1_28543_29254_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|607aa|down_1|NZ_CP010525.1_29258_31079_+	NF033092, HK_WalK, cell wall metabolism sensor histidine kinase WalK	NA|428aa|down_2|NZ_CP010525.1_31075_32359_+	pfam07435, YycH, YycH protein	NA|261aa|down_3|NZ_CP010525.1_32345_33128_+	pfam09648, YycI, YycH protein	NA|265aa|down_4|NZ_CP010525.1_33144_33939_+	COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]	NA|421aa|down_5|NZ_CP010525.1_34155_35418_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|160aa|down_6|NZ_CP010525.1_35716_36196_+	pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase	NA|105aa|down_7|NZ_CP010525.1_36211_36526_+	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|486aa|down_8|NZ_CP010525.1_36522_37980_+	NA	NA|460aa|down_9|NZ_CP010525.1_40283_41663_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	2	119934-120011	2	CRISPRCasFinder	no		RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Orphan	CCAAATGTCCTTATAACGGGGATGAA	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA,NA|49aa|down_5|NZ_CP010525.1_125689_125836_+	NA|347aa|up_9|NZ_CP010525.1_106802_107843_+	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional	NA|221aa|up_8|NZ_CP010525.1_107832_108495_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|281aa|up_7|NZ_CP010525.1_108556_109399_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|594aa|up_6|NZ_CP010525.1_109634_111416_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|239aa|up_5|NZ_CP010525.1_111390_112107_+	PRK14084, PRK14084, DNA-binding response regulator	NA|601aa|up_4|NZ_CP010525.1_112237_114040_+	COG1966, CstA, Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]	NA|358aa|up_3|NZ_CP010525.1_114379_115453_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|250aa|up_2|NZ_CP010525.1_115906_116656_+	pfam06738, ThrE, Putative threonine/serine exporter	NA|149aa|up_1|NZ_CP010525.1_116731_117178_+	pfam12821, ThrE_2, Threonine/Serine exporter, ThrE	NA|454aa|up_0|NZ_CP010525.1_117950_119312_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|338aa|down_0|NZ_CP010525.1_120162_121176_-	pfam07854, DUF1646, Protein of unknown function (DUF1646)	NA|616aa|down_1|NZ_CP010525.1_121529_123377_+	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing)	NA|314aa|down_2|NZ_CP010525.1_123525_124467_-	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold	NA|126aa|down_3|NZ_CP010525.1_124569_124947_+	PRK01658, PRK01658, CidA/LrgA family holin-like protein	NA|228aa|down_4|NZ_CP010525.1_124936_125620_+	pfam04172, LrgB, LrgB-like family	NA|49aa|down_5|NZ_CP010525.1_125689_125836_+	NA	NA|160aa|down_6|NZ_CP010525.1_125943_126423_+	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|59aa|down_7|NZ_CP010525.1_126499_126676_+	pfam04350, PilO, Pilus assembly protein, PilO	NA|289aa|down_8|NZ_CP010525.1_127547_128414_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|283aa|down_9|NZ_CP010525.1_128669_129518_+	COG1737, RpiR, Transcriptional regulators [Transcription]
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	3	669382-669482	3	CRISPRCasFinder	no		RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Orphan	CCGAGTGAACCGGTTTTATCAACAC	25	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA|65aa|up_5|NZ_CP010525.1_661101_661296_+,NA|82aa|down_9|NZ_CP010525.1_679590_679836_-	NA|303aa|up_9|NZ_CP010525.1_656801_657710_+	PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyase; Provisional	NA|260aa|up_8|NZ_CP010525.1_657840_658620_+	PRK07657, PRK07657, enoyl-CoA hydratase; Provisional	NA|506aa|up_7|NZ_CP010525.1_658624_660142_+	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|149aa|up_6|NZ_CP010525.1_660289_660736_+	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain	NA|65aa|up_5|NZ_CP010525.1_661101_661296_+	NA	NA|188aa|up_4|NZ_CP010525.1_661466_662030_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|62aa|up_3|NZ_CP010525.1_662852_663038_+	PRK08061, rpsN, type Z 30S ribosomal protein S14	NA|724aa|up_2|NZ_CP010525.1_663552_665724_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|432aa|up_1|NZ_CP010525.1_665973_667269_-	COG2233, UraA, Xanthine/uracil permeases [Nucleotide transport and metabolism]	NA|319aa|up_0|NZ_CP010525.1_667929_668886_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|445aa|down_0|NZ_CP010525.1_669495_670830_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|248aa|down_1|NZ_CP010525.1_671154_671898_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|346aa|down_2|NZ_CP010525.1_672303_673341_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|331aa|down_3|NZ_CP010525.1_674002_674995_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|197aa|down_4|NZ_CP010525.1_675007_675598_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|126aa|down_5|NZ_CP010525.1_675590_675968_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|453aa|down_6|NZ_CP010525.1_676460_677819_-	PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed	NA|253aa|down_7|NZ_CP010525.1_678106_678865_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|146aa|down_8|NZ_CP010525.1_678861_679299_+	pfam17370, DUF5392, Family of unknown function (DUF5392)	NA|82aa|down_9|NZ_CP010525.1_679590_679836_-	NA
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	4	709156-711900	1,4,1,5	PILER-CR,CRISPRCasFinder,CRT,CRISPRCasFinder	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	 Type I-U?,Type I-C,Type I-U	GTCGCTCCCTACATGGGGGCGTGGATTGAAAT,GTCGCTCCCTACATGGGGGCGTGGATTGAAAT,GTCGCTCCCTACATGGGGGCGTGGATTGAAATN,GTCGCTCCCTACATGGGGGCGTGGATTGAAAT	32,32,33,32	0	0	NA	NA	I-C:I-C:I-C:I-C	40,38,41,38	41	TypeI-U?,TypeI-C,TypeI-U	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA,NA|294aa|down_5|NZ_CP010525.1_719012_719894_-,NA|141aa|down_6|NZ_CP010525.1_719909_720332_-,NA|203aa|down_7|NZ_CP010525.1_720356_720965_-	NA|165aa|up_9|NZ_CP010525.1_695703_696198_-	pfam07681, DoxX, DoxX	NA|196aa|up_8|NZ_CP010525.1_696456_697044_-	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD	NA|1080aa|up_7|NZ_CP010525.1_697193_700433_+	pfam08455, SNF2_assoc, Bacterial SNF2 helicase associated	cas3|809aa|up_6|NZ_CP010525.1_700905_703332_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|240aa|up_5|NZ_CP010525.1_703529_704249_+	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas8c|627aa|up_4|NZ_CP010525.1_704249_706130_+	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|287aa|up_3|NZ_CP010525.1_706151_707012_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|219aa|up_2|NZ_CP010525.1_707001_707658_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|up_1|NZ_CP010525.1_707654_708686_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NZ_CP010525.1_708696_708987_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|140aa|down_0|NZ_CP010525.1_712097_712517_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|208aa|down_1|NZ_CP010525.1_713287_713911_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|434aa|down_2|NZ_CP010525.1_714607_715909_+	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional	NA|382aa|down_3|NZ_CP010525.1_716285_717431_+	PRK09420, cpdB, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase	NA|305aa|down_4|NZ_CP010525.1_718075_718990_+	pfam06207, DUF1002, Protein of unknown function (DUF1002)	NA|294aa|down_5|NZ_CP010525.1_719012_719894_-	NA	NA|141aa|down_6|NZ_CP010525.1_719909_720332_-	NA	NA|203aa|down_7|NZ_CP010525.1_720356_720965_-	NA	NA|512aa|down_8|NZ_CP010525.1_721251_722787_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|230aa|down_9|NZ_CP010525.1_724328_725018_+	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	5	874504-874610	6	CRISPRCasFinder	no		RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Orphan	GGTTCTGAATTTGCCAGCGAAACGAA	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA|95aa|up_4|NZ_CP010525.1_865579_865864_+,NA|127aa|down_8|NZ_CP010525.1_884270_884651_-	NA|373aa|up_9|NZ_CP010525.1_859662_860781_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|327aa|up_8|NZ_CP010525.1_860959_861940_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|53aa|up_7|NZ_CP010525.1_862026_862185_+	pfam08176, SspK, Small acid-soluble spore protein K family	NA|291aa|up_6|NZ_CP010525.1_862515_863388_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|454aa|up_5|NZ_CP010525.1_863350_864712_-	pfam13546, DDE_5, DDE superfamily endonuclease	NA|95aa|up_4|NZ_CP010525.1_865579_865864_+	NA	NA|486aa|up_3|NZ_CP010525.1_865993_867451_-	PRK12810, gltD, glutamate synthase subunit beta; Reviewed	NA|1521aa|up_2|NZ_CP010525.1_867729_872292_-	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|305aa|up_1|NZ_CP010525.1_872416_873331_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|250aa|up_0|NZ_CP010525.1_873613_874363_+	PRK08063, PRK08063, enoyl-[acyl-carrier-protein] reductase FabL	NA|85aa|down_0|NZ_CP010525.1_874835_875090_+	pfam14182, YgaB, YgaB-like protein	NA|177aa|down_1|NZ_CP010525.1_875244_875775_+	PRK13662, PRK13662, hypothetical protein; Provisional	NA|583aa|down_2|NZ_CP010525.1_875875_877624_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|360aa|down_3|NZ_CP010525.1_877955_879035_+	pfam05913, DUF871, Bacterial protein of unknown function (DUF871)	NA|296aa|down_4|NZ_CP010525.1_879025_879913_+	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|490aa|down_5|NZ_CP010525.1_879930_881400_+	PRK09586, murP, PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed	NA|290aa|down_6|NZ_CP010525.1_881399_882269_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|93aa|down_7|NZ_CP010525.1_883741_884020_+	pfam10942, DUF2619, Protein of unknown function (DUF2619)	NA|127aa|down_8|NZ_CP010525.1_884270_884651_-	NA	NA|423aa|down_9|NZ_CP010525.1_884784_886053_+	cd17474, MFS_YfmO_like, Bacillus subtilis multidrug efflux protein YfmO and similar transporters of the Major Facilitator Superfamily
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	6	1122639-1122726	7	CRISPRCasFinder	no		RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Orphan	TCGACAACAATTAGCGCCCATGC	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA|66aa|up_7|NZ_CP010525.1_1115029_1115227_-,NA|83aa|up_2|NZ_CP010525.1_1119780_1120029_+,NA	NA|70aa|up_9|NZ_CP010525.1_1113852_1114062_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|129aa|up_8|NZ_CP010525.1_1114327_1114714_+	PRK08059, PRK08059, general stress protein 13; Validated	NA|66aa|up_7|NZ_CP010525.1_1115029_1115227_-	NA	NA|157aa|up_6|NZ_CP010525.1_1115589_1116060_-	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|77aa|up_5|NZ_CP010525.1_1116212_1116443_-	COG2155, COG2155, Uncharacterized conserved protein [Function unknown]	NA|450aa|up_4|NZ_CP010525.1_1116599_1117949_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|334aa|up_3|NZ_CP010525.1_1118066_1119068_-	pfam07885, Ion_trans_2, Ion channel	NA|83aa|up_2|NZ_CP010525.1_1119780_1120029_+	NA	NA|310aa|up_1|NZ_CP010525.1_1120041_1120971_+	PRK08618, PRK08618, ornithine cyclodeaminase family protein	NA|490aa|up_0|NZ_CP010525.1_1120985_1122455_+	cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like	NA|389aa|down_0|NZ_CP010525.1_1122982_1124149_+	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]	NA|408aa|down_1|NZ_CP010525.1_1124367_1125591_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|157aa|down_2|NZ_CP010525.1_1127197_1127668_+	pfam02681, DUF212, Divergent PAP2 family	NA|261aa|down_3|NZ_CP010525.1_1127946_1128729_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|365aa|down_4|NZ_CP010525.1_1129085_1130180_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|229aa|down_5|NZ_CP010525.1_1130172_1130859_+	cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis	NA|684aa|down_6|NZ_CP010525.1_1131078_1133130_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|383aa|down_7|NZ_CP010525.1_1133402_1134551_+	cd01541, PBP1_AraR, ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators	NA|534aa|down_8|NZ_CP010525.1_1134745_1136347_-	cd07778, FGGY_L-RBK_like, L-ribulokinase-like proteins; a subfamily of the FGGY family of carbohydrate kinases	NA|388aa|down_9|NZ_CP010525.1_1138050_1139214_-	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	7	1187083-1187183	8	CRISPRCasFinder	no		RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Orphan	TGGGTTCGATTCCCATCATCCGC	23	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA,NA|43aa|down_9|NZ_CP010525.1_1198037_1198166_-	NA|490aa|up_9|NZ_CP010525.1_1163202_1164672_-	COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]	NA|65aa|up_8|NZ_CP010525.1_1164668_1164863_-	pfam11755, DUF3311, Protein of unknown function (DUF3311)	NA|396aa|up_7|NZ_CP010525.1_1164922_1166110_-	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085	NA|139aa|up_6|NZ_CP010525.1_1166328_1166745_-	COG2128, COG2128, Uncharacterized conserved protein [Function unknown]	NA|137aa|up_5|NZ_CP010525.1_1166851_1167262_+	smart00344, HTH_ASNC, helix_turn_helix ASNC type	NA|108aa|up_4|NZ_CP010525.1_1169931_1170255_+	cd10152, SaCsoR-like_DUF156, Staphylococcus aureus copper-sensitive operon repressor (CsoR), and related domains; this family was previously known as part of DUF156	NA|69aa|up_3|NZ_CP010525.1_1170270_1170477_+	TIGR00003, COP-associated_protein, copper ion binding protein	NA|805aa|up_2|NZ_CP010525.1_1170570_1172985_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|356aa|up_1|NZ_CP010525.1_1177701_1178769_+	pfam07854, DUF1646, Protein of unknown function (DUF1646)	NA|230aa|up_0|NZ_CP010525.1_1178908_1179598_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|308aa|down_0|NZ_CP010525.1_1187681_1188605_-	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated	NA|444aa|down_1|NZ_CP010525.1_1188870_1190202_+	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|582aa|down_2|NZ_CP010525.1_1190203_1191949_+	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated	NA|268aa|down_3|NZ_CP010525.1_1191945_1192749_+	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|273aa|down_4|NZ_CP010525.1_1192788_1193607_+	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated	NA|485aa|down_5|NZ_CP010525.1_1193924_1195379_+	PRK03640, PRK03640, o-succinylbenzoate--CoA ligase	NA|368aa|down_6|NZ_CP010525.1_1195375_1196479_+	cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids	NA|53aa|down_7|NZ_CP010525.1_1196807_1196966_-	pfam07561, DUF1540, Domain of Unknown Function (DUF1540)	NA|297aa|down_8|NZ_CP010525.1_1197027_1197918_-	cd01017, AdcA, Metal binding protein AdcA	NA|43aa|down_9|NZ_CP010525.1_1198037_1198166_-	NA
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	8	1792496-1792583	9	CRISPRCasFinder	no	DEDDh	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Unclear	TGAACAGTCCATCTGTTCAAAATG	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA|90aa|up_3|NZ_CP010525.1_1790793_1791063_+,NA|64aa|up_1|NZ_CP010525.1_1791443_1791635_+,NA|122aa|up_0|NZ_CP010525.1_1791798_1792164_+,NA|63aa|down_2|NZ_CP010525.1_1794064_1794253_+,NA|61aa|down_3|NZ_CP010525.1_1794521_1794704_+,NA|101aa|down_4|NZ_CP010525.1_1794718_1795021_+,NA|67aa|down_5|NZ_CP010525.1_1795026_1795227_+,NA|80aa|down_6|NZ_CP010525.1_1795244_1795484_+	NA|667aa|up_9|NZ_CP010525.1_1785082_1787083_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	DEDDh|321aa|up_8|NZ_CP010525.1_1787128_1788091_-	PRK06807, PRK06807, 3'-5' exonuclease	NA|306aa|up_7|NZ_CP010525.1_1788120_1789038_-	cd17748, BRCT_DNA_ligase_like, BRCT domain of bacterial NAD-dependent DNA ligase (LigA) and similar proteins	NA|140aa|up_6|NZ_CP010525.1_1789166_1789586_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|76aa|up_5|NZ_CP010525.1_1789731_1789959_+	pfam01381, HTH_3, Helix-turn-helix	NA|174aa|up_4|NZ_CP010525.1_1790247_1790769_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|90aa|up_3|NZ_CP010525.1_1790793_1791063_+	NA	NA|94aa|up_2|NZ_CP010525.1_1791075_1791357_+	pfam17448, yqaH, Uncharacterized protein YqaH	NA|64aa|up_1|NZ_CP010525.1_1791443_1791635_+	NA	NA|122aa|up_0|NZ_CP010525.1_1791798_1792164_+	NA	NA|131aa|down_0|NZ_CP010525.1_1793135_1793528_+	PRK07275, PRK07275, single-stranded DNA-binding protein; Provisional	NA|70aa|down_1|NZ_CP010525.1_1793722_1793932_+	pfam17356, PBSX_XtrA, Phage-like element PBSX protein XtrA	NA|63aa|down_2|NZ_CP010525.1_1794064_1794253_+	NA	NA|61aa|down_3|NZ_CP010525.1_1794521_1794704_+	NA	NA|101aa|down_4|NZ_CP010525.1_1794718_1795021_+	NA	NA|67aa|down_5|NZ_CP010525.1_1795026_1795227_+	NA	NA|80aa|down_6|NZ_CP010525.1_1795244_1795484_+	NA	NA|229aa|down_7|NZ_CP010525.1_1795546_1796233_+	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|152aa|down_8|NZ_CP010525.1_1796335_1796791_+	TIGR01637, Putative_autolysin_regulatory_protein_ArpU, phage transcriptional regulator, ArpU family	NA|181aa|down_9|NZ_CP010525.1_1796787_1797330_+	cd01192, INT_C_like_3, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	9	2433316-2433391	10	CRISPRCasFinder	no	RT	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Unclear	TAGACGACCTCTACGTGAAGAAAG	24	1	1	2433340-2433367	NZ_CP010525.1_315586-315559	NA	1	1	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA|157aa|up_8|NZ_CP010525.1_2421604_2422075_-,NA|92aa|down_1|NZ_CP010525.1_2434474_2434750_-,NA|61aa|down_6|NZ_CP010525.1_2441712_2441895_-	NA|268aa|up_9|NZ_CP010525.1_2420476_2421280_-	TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family	NA|157aa|up_8|NZ_CP010525.1_2421604_2422075_-	NA	RT|470aa|up_7|NZ_CP010525.1_2422237_2423647_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|523aa|up_6|NZ_CP010525.1_2424088_2425657_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|359aa|up_5|NZ_CP010525.1_2425873_2426950_-	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|329aa|up_4|NZ_CP010525.1_2427204_2428191_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|149aa|up_3|NZ_CP010525.1_2428745_2429192_+	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain	NA|251aa|up_2|NZ_CP010525.1_2430074_2430827_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|404aa|up_1|NZ_CP010525.1_2431081_2432293_-	PRK13289, PRK13289, NO-inducible flavohemoprotein	NA|145aa|up_0|NZ_CP010525.1_2432467_2432902_+	PRK11014, PRK11014, HTH-type transcriptional repressor NsrR	NA|254aa|down_0|NZ_CP010525.1_2433491_2434253_+	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|92aa|down_1|NZ_CP010525.1_2434474_2434750_-	NA	NA|308aa|down_2|NZ_CP010525.1_2435183_2436107_+	PRK06701, PRK06701, short chain dehydrogenase; Provisional	NA|473aa|down_3|NZ_CP010525.1_2437438_2438857_-	cd17366, MFS_ProP, Proline/betaine transporter of the Major Facilitator Superfamily of transporters	NA|330aa|down_4|NZ_CP010525.1_2439515_2440505_-	cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains	NA|98aa|down_5|NZ_CP010525.1_2441168_2441462_-	TIGR04197, conserved_hypothetical_protein, type VII secretion effector, SACOL2603 family	NA|61aa|down_6|NZ_CP010525.1_2441712_2441895_-	NA	NA|230aa|down_7|NZ_CP010525.1_2445280_2445970_-	TIGR01990, bPGM, beta-phosphoglucomutase	NA|759aa|down_8|NZ_CP010525.1_2446198_2448475_-	PRK13807, PRK13807, maltose phosphorylase; Provisional	NA|443aa|down_9|NZ_CP010525.1_2448500_2449829_-	cd17313, MFS_SLC45_SUC, Solute carrier family 45 and similar sugar transporters of the Major Facilitator Superfamily of transporters
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	10	2497570-2497802	2	CRT	no		RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Orphan	TTTTGAANCTGNCAAAAGGACAAAA	25	2	2	2497595-2497621|2497647-2497673	NZ_CP010525.1_2495921-2495947|NZ_CP010525.1_2496077-2496103	NA	4	4	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA|66aa|up_9|NZ_CP010525.1_2489785_2489983_+,NA|53aa|up_8|NZ_CP010525.1_2489995_2490154_-,NA|57aa|up_7|NZ_CP010525.1_2491113_2491284_+,NA|68aa|up_6|NZ_CP010525.1_2491584_2491788_+,NA|85aa|up_2|NZ_CP010525.1_2494507_2494762_-,NA|44aa|down_0|NZ_CP010525.1_2498109_2498241_-	NA|66aa|up_9|NZ_CP010525.1_2489785_2489983_+	NA	NA|53aa|up_8|NZ_CP010525.1_2489995_2490154_-	NA	NA|57aa|up_7|NZ_CP010525.1_2491113_2491284_+	NA	NA|68aa|up_6|NZ_CP010525.1_2491584_2491788_+	NA	NA|244aa|up_5|NZ_CP010525.1_2492585_2493317_+	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]	NA|171aa|up_4|NZ_CP010525.1_2493384_2493897_+	PRK13679, PRK13679, hypothetical protein; Provisional	NA|143aa|up_3|NZ_CP010525.1_2493902_2494331_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|85aa|up_2|NZ_CP010525.1_2494507_2494762_-	NA	NA|86aa|up_1|NZ_CP010525.1_2494863_2495121_-	pfam14069, SpoVIF, Stage VI sporulation protein F	NA|392aa|up_0|NZ_CP010525.1_2496293_2497469_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|44aa|down_0|NZ_CP010525.1_2498109_2498241_-	NA	NA|119aa|down_1|NZ_CP010525.1_2498325_2498682_-	TIGR02839, stage_V_sporulation_protein_AE, stage V sporulation protein AE	NA|337aa|down_2|NZ_CP010525.1_2498860_2499871_-	PRK12404, PRK12404, stage V sporulation protein AD; Provisional	NA|159aa|down_3|NZ_CP010525.1_2499870_2500347_-	TIGR02838, stage_V_sporulation_protein_AC, stage V sporulation protein AC	NA|155aa|down_4|NZ_CP010525.1_2500363_2500828_-	cd16016, AP-SPAP, SPAP is a subclass of alkaline phosphatase (AP)	NA|119aa|down_5|NZ_CP010525.1_2501154_2501511_-	pfam07098, DUF1360, Protein of unknown function (DUF1360)	NA|147aa|down_6|NZ_CP010525.1_2501659_2502100_+	pfam10612, Spore-coat_CotZ, Spore coat protein Z	NA|235aa|down_7|NZ_CP010525.1_2502148_2502853_-	pfam14153, Spore_coat_CotO, Spore coat protein CotO	NA|233aa|down_8|NZ_CP010525.1_2503121_2503820_+	pfam11780, DUF3318, Protein of unknown function (DUF3318)	NA|260aa|down_9|NZ_CP010525.1_2503950_2504730_-	PRK08594, PRK08594, enoyl-[acyl-carrier-protein] reductase FabI
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	11	2513689-2513763	11	CRISPRCasFinder	no		RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Orphan	AAGACATTTTCACGGTCTCGGGC	23	1	1	2513712-2513740	NZ_CP010525.1_2511305-2511333	NA	1	1	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA|128aa|up_3|NZ_CP010525.1_2509165_2509549_-,NA|49aa|up_0|NZ_CP010525.1_2511820_2511967_+,NA|63aa|down_2|NZ_CP010525.1_2517078_2517267_+	NA|233aa|up_9|NZ_CP010525.1_2503121_2503820_+	pfam11780, DUF3318, Protein of unknown function (DUF3318)	NA|260aa|up_8|NZ_CP010525.1_2503950_2504730_-	PRK08594, PRK08594, enoyl-[acyl-carrier-protein] reductase FabI	NA|246aa|up_7|NZ_CP010525.1_2504941_2505679_+	PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional	NA|291aa|up_6|NZ_CP010525.1_2506795_2507668_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|265aa|up_5|NZ_CP010525.1_2507676_2508471_-	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|212aa|up_4|NZ_CP010525.1_2508507_2509143_-	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|128aa|up_3|NZ_CP010525.1_2509165_2509549_-	NA	NA|195aa|up_2|NZ_CP010525.1_2509685_2510270_+	cd07762, CYTH-like_Pase_1, Uncharacterized subgroup 1 of the CYTH-like superfamily	NA|265aa|up_1|NZ_CP010525.1_2510266_2511061_+	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|49aa|up_0|NZ_CP010525.1_2511820_2511967_+	NA	NA|134aa|down_0|NZ_CP010525.1_2515361_2515763_+	cd14772, TrHb2_Bs-trHb-like_O, Truncated hemoglobins, group 2 (O); Bacillus subtilis TrHb like	NA|283aa|down_1|NZ_CP010525.1_2515768_2516617_+	pfam13743, Thioredoxin_5, Thioredoxin	NA|63aa|down_2|NZ_CP010525.1_2517078_2517267_+	NA	NA|605aa|down_3|NZ_CP010525.1_2517363_2519178_-	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|407aa|down_4|NZ_CP010525.1_2519245_2520466_-	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease    domain [General function prediction only]	NA|220aa|down_5|NZ_CP010525.1_2520721_2521381_-	PRK02315, PRK02315, adaptor protein MecA	NA|132aa|down_6|NZ_CP010525.1_2521740_2522136_-	PRK01655, spxA, transcriptional regulator Spx; Reviewed	NA|312aa|down_7|NZ_CP010525.1_2522415_2523351_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|354aa|down_8|NZ_CP010525.1_2523358_2524420_-	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|340aa|down_9|NZ_CP010525.1_2524438_2525458_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	12	2599171-2599263	12	CRISPRCasFinder	no		RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Orphan	TGCTTGTGCGTTTCACCGCCGTGT	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA|31aa|up_3|NZ_CP010525.1_2596495_2596588_-,NA	NA|138aa|up_9|NZ_CP010525.1_2592657_2593071_+	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|175aa|up_8|NZ_CP010525.1_2593303_2593828_+	pfam17099, TrpP, Tryptophan transporter TrpP	NA|63aa|up_7|NZ_CP010525.1_2593871_2594060_-	PRK00068, PRK00068, hypothetical protein; Validated	NA|121aa|up_6|NZ_CP010525.1_2594528_2594891_+	COG4980, GvpP, Gas vesicle protein [General function prediction only]	NA|189aa|up_5|NZ_CP010525.1_2595035_2595602_+	PRK13777, PRK13777, HTH-type transcriptional regulator Hpr	NA|110aa|up_4|NZ_CP010525.1_2595616_2595946_-	pfam08963, DUF1878, Protein of unknown function (DUF1878)	NA|31aa|up_3|NZ_CP010525.1_2596495_2596588_-	NA	NA|291aa|up_2|NZ_CP010525.1_2596887_2597760_+	PRK03002, prsA, peptidylprolyl isomerase PrsA	NA|65aa|up_1|NZ_CP010525.1_2597808_2598003_-	pfam14147, Spore_YhaL, Sporulation protein YhaL	NA|315aa|up_0|NZ_CP010525.1_2598139_2599084_-	PRK13480, PRK13480, 3'-5' exoribonuclease YhaM; Provisional	NA|996aa|down_0|NZ_CP010525.1_2599295_2602283_-	COG4717, COG4717, Uncharacterized conserved protein [Function unknown]	NA|424aa|down_1|NZ_CP010525.1_2602279_2603551_-	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain	NA|285aa|down_2|NZ_CP010525.1_2603672_2604527_-	COG3689, COG3689, Predicted membrane protein [Function unknown]	NA|298aa|down_3|NZ_CP010525.1_2604539_2605433_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|260aa|down_4|NZ_CP010525.1_2605663_2606443_+	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|62aa|down_5|NZ_CP010525.1_2606503_2606689_-	pfam14120, YhzD, YhzD-like protein	NA|261aa|down_6|NZ_CP010525.1_2606693_2607476_-	PRK07659, PRK07659, enoyl-CoA hydratase; Provisional	NA|289aa|down_7|NZ_CP010525.1_2607618_2608485_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|116aa|down_8|NZ_CP010525.1_2608602_2608950_-	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|378aa|down_9|NZ_CP010525.1_2609143_2610277_-	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	13	2821581-2821672	13	CRISPRCasFinder	no	DinG	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Type IV-A	CCAAAGGCTTTGCAAGGGCTAGAAC	25	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA|199aa|up_0|NZ_CP010525.1_2820828_2821425_+,NA|69aa|down_0|NZ_CP010525.1_2821821_2822028_-,NA|59aa|down_9|NZ_CP010525.1_2832132_2832309_-	NA|320aa|up_9|NZ_CP010525.1_2806350_2807310_+	cd19103, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein	NA|255aa|up_8|NZ_CP010525.1_2809648_2810413_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|62aa|up_7|NZ_CP010525.1_2810455_2810641_+	pfam13076, Fur_reg_FbpA, Fur-regulated basic protein A	NA|260aa|up_6|NZ_CP010525.1_2810949_2811729_-	cd07517, HAD_HPP, phosphatase, similar to Bacteroides thetaiotaomicron VPI-5482 BT4131 hexose phosphate phosphatase; belongs to the haloacid dehalogenase-like superfamily	NA|181aa|up_5|NZ_CP010525.1_2811757_2812300_-	cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI)	NA|320aa|up_4|NZ_CP010525.1_2812432_2813392_-	cd06286, PBP1_CcpB-like, ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species	NA|354aa|up_3|NZ_CP010525.1_2815420_2816482_-	cd05285, sorbitol_DH, Sorbitol dehydrogenase	NA|840aa|up_2|NZ_CP010525.1_2816706_2819226_+	sd00006, TPR, Tetratricopeptide repeat	NA|384aa|up_1|NZ_CP010525.1_2819526_2820678_+	TIGR04478, radical_SAM_superfamily_domain_protein, radical SAM/CxCxxxxC motif protein YfkAB	NA|199aa|up_0|NZ_CP010525.1_2820828_2821425_+	NA	NA|69aa|down_0|NZ_CP010525.1_2821821_2822028_-	NA	NA|142aa|down_1|NZ_CP010525.1_2822228_2822654_+	pfam00582, Usp, Universal stress protein family	NA|443aa|down_2|NZ_CP010525.1_2823160_2824489_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|265aa|down_3|NZ_CP010525.1_2824628_2825423_+	pfam02522, Antibiotic_NAT, Aminoglycoside 3-N-acetyltransferase	NA|300aa|down_4|NZ_CP010525.1_2825869_2826769_-	PRK06701, PRK06701, short chain dehydrogenase; Provisional	NA|553aa|down_5|NZ_CP010525.1_2826856_2828515_-	cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product	NA|508aa|down_6|NZ_CP010525.1_2828498_2830022_-	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated	NA|129aa|down_7|NZ_CP010525.1_2830018_2830405_-	cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR	NA|194aa|down_8|NZ_CP010525.1_2831470_2832052_+	pfam02632, BioY, BioY family	NA|59aa|down_9|NZ_CP010525.1_2832132_2832309_-	NA
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	14	2899910-2899990	14	CRISPRCasFinder	no		RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Orphan	AAACCCGGACTTGCAAGCACGCCA	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA,NA	NA|220aa|up_9|NZ_CP010525.1_2888714_2889374_-	cd16423, HAD_BPGM-like, uncharacterized subfamily of beta-phosphoglucomutase-like family, similar to uncharacterized Bacillus subtilis YhcW	NA|309aa|up_8|NZ_CP010525.1_2889720_2890647_+	TIGR01432, AA3-600_quinol_oxidase_subunit_II, cytochrome aa3 quinol oxidase, subunit II	NA|650aa|up_7|NZ_CP010525.1_2890671_2892621_+	TIGR02882, cytochrome_aa3_quinol_oxidase_subunit_I, cytochrome aa3 quinol oxidase, subunit I	NA|203aa|up_6|NZ_CP010525.1_2892617_2893226_+	cd02863, Ubiquinol_oxidase_III, Ubiquinol oxidase subunit III subfamily	NA|95aa|up_5|NZ_CP010525.1_2893225_2893510_+	TIGR02901, cytochrome_aa3_quinol_oxidase_subunit_IV, cytochrome aa3 quinol oxidase, subunit IV	NA|248aa|up_4|NZ_CP010525.1_2893688_2894432_-	cd05233, SDR_c, classical (c) SDRs	NA|271aa|up_3|NZ_CP010525.1_2894641_2895454_-	PRK13546, PRK13546, teichoic acids export ABC transporter ATP-binding subunit TagH	NA|162aa|up_2|NZ_CP010525.1_2895521_2896007_-	COG5652, COG5652, Predicted integral membrane protein [Function unknown]	NA|165aa|up_1|NZ_CP010525.1_2896263_2896758_-	pfam17936, Big_6, Bacterial Ig domain	NA|581aa|up_0|NZ_CP010525.1_2897103_2898846_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|329aa|down_0|NZ_CP010525.1_2900067_2901054_-	cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases	NA|105aa|down_1|NZ_CP010525.1_2901070_2901385_-	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis	NA|242aa|down_2|NZ_CP010525.1_2901561_2902287_-	COG1922, WecG, Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]	NA|249aa|down_3|NZ_CP010525.1_2902610_2903357_-	TIGR04094, AraC_family_transcriptional_regulator, YSIRK-targeted surface antigen transcriptional regulator	NA|415aa|down_4|NZ_CP010525.1_2903472_2904717_+	cd14750, PBP2_TMBP, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose; possesses type 2 periplasmic binding fold	NA|405aa|down_5|NZ_CP010525.1_2904902_2906117_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|276aa|down_6|NZ_CP010525.1_2906129_2906957_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|765aa|down_7|NZ_CP010525.1_2907165_2909460_+	COG1554, ATH1, Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]	NA|392aa|down_8|NZ_CP010525.1_2909699_2910875_-	PRK08064, PRK08064, cystathionine beta-lyase MetC	NA|372aa|down_9|NZ_CP010525.1_2910871_2911987_-	PRK08247, PRK08247, methionine biosynthesis PLP-dependent protein
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	15	2993956-2994048	15	CRISPRCasFinder	no	RT	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Unclear	ATACGGCCCACACCAGAAAAGGAA	24	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA|55aa|up_3|NZ_CP010525.1_2989388_2989553_-,NA|98aa|down_5|NZ_CP010525.1_3000571_3000865_+	NA|366aa|up_9|NZ_CP010525.1_2980890_2981988_+	PRK09375, PRK09375, quinolinate synthase NadA	NA|391aa|up_8|NZ_CP010525.1_2982136_2983309_-	pfam00480, ROK, ROK family	NA|445aa|up_7|NZ_CP010525.1_2983517_2984852_+	PRK05474, PRK05474, xylose isomerase; Provisional	NA|512aa|up_6|NZ_CP010525.1_2984911_2986447_+	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases	NA|460aa|up_5|NZ_CP010525.1_2986436_2987816_+	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily	NA|361aa|up_4|NZ_CP010525.1_2988102_2989185_+	cd08172, GlyDH-like, Glycerol_dehydrogenase-like	NA|55aa|up_3|NZ_CP010525.1_2989388_2989553_-	NA	NA|325aa|up_2|NZ_CP010525.1_2989680_2990655_-	COG5464, COG5464, Uncharacterized conserved protein [Function unknown]	NA|526aa|up_1|NZ_CP010525.1_2990599_2992177_-	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|493aa|up_0|NZ_CP010525.1_2992327_2993806_+	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|395aa|down_0|NZ_CP010525.1_2994158_2995343_+	TIGR01835, 3-hydroxy-3-methylglutaryl_CoA_synthase, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade	RT|470aa|down_1|NZ_CP010525.1_2995410_2996820_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|239aa|down_2|NZ_CP010525.1_2997260_2997977_-	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|272aa|down_3|NZ_CP010525.1_2998600_2999416_-	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family	NA|191aa|down_4|NZ_CP010525.1_2999848_3000421_+	cd02219, cupin_YjlB-like, Bacillus subtilis YjlB and related proteins, cupin domain	NA|98aa|down_5|NZ_CP010525.1_3000571_3000865_+	NA	NA|346aa|down_6|NZ_CP010525.1_3001216_3002254_+	PRK07109, PRK07109, short chain dehydrogenase; Provisional	NA|187aa|down_7|NZ_CP010525.1_3002516_3003077_-	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|182aa|down_8|NZ_CP010525.1_3003091_3003637_-	COG1510, COG1510, Predicted transcriptional regulators [Transcription]	NA|382aa|down_9|NZ_CP010525.1_3003821_3004967_+	TIGR01186, Choline_transport_ATP-binding_protein_OpuBA, glycine betaine/L-proline transport ATP binding subunit
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	16	3286677-3287269	3	CRT	no		RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Orphan	CCNTTTTGTCTTTTTGAA	18	0	0	NA	NA	NA	11	11	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA,NA|71aa|down_3|NZ_CP010525.1_3290967_3291180_-	NA|347aa|up_9|NZ_CP010525.1_3272101_3273142_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|531aa|up_8|NZ_CP010525.1_3273789_3275382_-	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated	NA|368aa|up_7|NZ_CP010525.1_3275614_3276718_+	PRK09423, gldA, glycerol dehydrogenase; Provisional	NA|177aa|up_6|NZ_CP010525.1_3279503_3280034_-	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens  ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS)	NA|209aa|up_5|NZ_CP010525.1_3280166_3280793_-	PRK06718, PRK06718, NAD(P)-binding protein	NA|247aa|up_4|NZ_CP010525.1_3281079_3281820_-	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|253aa|up_3|NZ_CP010525.1_3281826_3282585_-	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT)	NA|223aa|up_2|NZ_CP010525.1_3282985_3283654_-	TIGR00434, Phosphoadenosine_phosphosulfate_reductase, phosophoadenylyl-sulfate reductase (thioredoxin)	NA|102aa|up_1|NZ_CP010525.1_3284232_3284538_-	TIGR04104, hypothetical_protein, cxxc_20_cxxc protein	NA|468aa|up_0|NZ_CP010525.1_3284707_3286111_+	pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein	NA|473aa|down_0|NZ_CP010525.1_3287411_3288830_-	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	NA|353aa|down_1|NZ_CP010525.1_3289213_3290272_-	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|135aa|down_2|NZ_CP010525.1_3290314_3290719_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|71aa|down_3|NZ_CP010525.1_3290967_3291180_-	NA	NA|188aa|down_4|NZ_CP010525.1_3291445_3292009_-	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|258aa|down_5|NZ_CP010525.1_3293777_3294551_-	PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional	NA|415aa|down_6|NZ_CP010525.1_3294528_3295773_-	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|340aa|down_7|NZ_CP010525.1_3295959_3296979_-	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation	NA|240aa|down_8|NZ_CP010525.1_3297175_3297895_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|196aa|down_9|NZ_CP010525.1_3298294_3298882_-	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase
GCF_000876545.1_ASM87654v1	NZ_CP010525	Bacillus coagulans strain HM-08 chromosome, complete genome	17	3519586-3519676	16	CRISPRCasFinder	no		RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	Orphan	TATGCTTGTTCCAGCAAAAGACGGG	25	0	0	NA	NA	NA	1	1	Orphan	RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,DEDDh,csa3,casR	NA,NA	NA|178aa|up_9|NZ_CP010525.1_3511774_3512308_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|62aa|up_8|NZ_CP010525.1_3512457_3512643_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|49aa|up_7|NZ_CP010525.1_3512678_3512825_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|217aa|up_6|NZ_CP010525.1_3513133_3513784_-	PRK08295, PRK08295, RNA polymerase sporulation sigma factor SigH	NA|170aa|up_5|NZ_CP010525.1_3513850_3514360_-	COG3688, COG3688, Predicted RNA-binding protein containing a PIN domain [General function prediction only]	NA|248aa|up_4|NZ_CP010525.1_3514361_3515105_-	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3	NA|138aa|up_3|NZ_CP010525.1_3515104_3515518_-	COG1939, COG1939, Ribonuclease III family protein [Replication, recombination, and    repair]	NA|466aa|up_2|NZ_CP010525.1_3515514_3516912_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|223aa|up_1|NZ_CP010525.1_3516892_3517561_-	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]	NA|487aa|up_0|NZ_CP010525.1_3517962_3519423_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|159aa|down_0|NZ_CP010525.1_3519975_3520452_-	pfam02542, YgbB, YgbB family	NA|227aa|down_1|NZ_CP010525.1_3520454_3521135_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|362aa|down_2|NZ_CP010525.1_3521201_3522287_-	COG4956, COG4956, Integral membrane protein (PIN domain superfamily) [General function prediction only]	NA|457aa|down_3|NZ_CP010525.1_3522633_3524004_-	PRK11823, PRK11823, DNA repair protein RadA; Provisional	NA|817aa|down_4|NZ_CP010525.1_3524236_3526687_-	CHL00095, clpC, Clp protease ATP binding subunit	NA|356aa|down_5|NZ_CP010525.1_3526703_3527771_-	PRK01059, PRK01059, ATP:guanido phosphotransferase; Provisional	NA|182aa|down_6|NZ_CP010525.1_3527770_3528316_-	COG3880, COG3880, Modulator of heat shock repressor CtsR, McsA [Signal transduction    mechanisms]	NA|154aa|down_7|NZ_CP010525.1_3528335_3528797_-	COG4463, CtsR, Transcriptional repressor of class III stress genes [Transcription]	NA|86aa|down_8|NZ_CP010525.1_3529086_3529344_-	pfam13108, DUF3969, Protein of unknown function (DUF3969)	NA|89aa|down_9|NZ_CP010525.1_3533925_3534192_-	TIGR02862, Sigma-K_factor-processing_regulatory_protein_BofA, pro-sigmaK processing inhibitor BofA
