assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000835265.1_ASM83526v1	NZ_CP010114	Mycobacterium avium subsp. paratuberculosis strain E93 chromosome, complete genome	1	401817-401907	1	CRISPRCasFinder	no	DinG	DinG,csa3,cas4,WYL,cas3,DEDDh	Type IV-A	CCGCCGCGCTGCGGCGGGCATCGTCGCCGGGCT	33	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA,NA|153aa|down_3|NZ_CP010114.1_406054_406513_+,NA|96aa|down_4|NZ_CP010114.1_406718_407006_+	NA|336aa|up_9|NZ_CP010114.1_390696_391704_+	PRK13685, PRK13685, hypothetical protein; Provisional	NA|328aa|up_8|NZ_CP010114.1_391722_392706_-	PRK13685, PRK13685, hypothetical protein; Provisional	NA|438aa|up_7|NZ_CP010114.1_392738_394052_-	PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	NA|291aa|up_6|NZ_CP010114.1_394077_394950_-	pfam04185, Phosphoesterase, Phosphoesterase family	NA|258aa|up_5|NZ_CP010114.1_395072_395846_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|272aa|up_4|NZ_CP010114.1_397282_398098_-	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|206aa|up_3|NZ_CP010114.1_398235_398853_+	pfam01083, Cutinase, Cutinase	NA|401aa|up_2|NZ_CP010114.1_398898_400101_+	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily	NA|393aa|up_1|NZ_CP010114.1_400097_401276_+	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|156aa|up_0|NZ_CP010114.1_401298_401766_-	pfam13772, AIG2_2, AIG2-like family	NA|472aa|down_0|NZ_CP010114.1_401919_403335_+	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed	NA|585aa|down_1|NZ_CP010114.1_403391_405146_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|291aa|down_2|NZ_CP010114.1_405142_406015_+	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family	NA|153aa|down_3|NZ_CP010114.1_406054_406513_+	NA	NA|96aa|down_4|NZ_CP010114.1_406718_407006_+	NA	NA|379aa|down_5|NZ_CP010114.1_407237_408374_+	pfam00823, PPE, PPE family	NA|379aa|down_6|NZ_CP010114.1_408483_409620_+	pfam00823, PPE, PPE family	NA|118aa|down_7|NZ_CP010114.1_409993_410347_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|306aa|down_8|NZ_CP010114.1_410538_411456_+	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|251aa|down_9|NZ_CP010114.1_411452_412205_-	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
GCF_000835265.1_ASM83526v1	NZ_CP010114	Mycobacterium avium subsp. paratuberculosis strain E93 chromosome, complete genome	2	1078254-1078334	2	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	CGCTAATGGCGGTGACCCGCTGCGCC	26	1	1	1078280-1078308	NZ_CP010114.1_348108-348080	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA,NA|176aa|down_5|NZ_CP010114.1_1083624_1084152_-	NA|148aa|up_9|NZ_CP010114.1_1067526_1067970_-	cd17788, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria	NA|642aa|up_8|NZ_CP010114.1_1068043_1069969_+	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|429aa|up_7|NZ_CP010114.1_1070013_1071300_-	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]	NA|206aa|up_6|NZ_CP010114.1_1071301_1071919_-	pfam11452, DUF3000, Protein of unknown function (DUF3000)	NA|274aa|up_5|NZ_CP010114.1_1072046_1072868_-	PRK07327, PRK07327, enoyl-CoA hydratase/isomerase family protein	NA|358aa|up_4|NZ_CP010114.1_1072915_1073989_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|232aa|up_3|NZ_CP010114.1_1075290_1075986_+	COG3253, ywfI, Predicted heme peroxidase involved in anaerobic stress response [General function prediction only]	NA|251aa|up_2|NZ_CP010114.1_1075982_1076735_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|283aa|up_1|NZ_CP010114.1_1076801_1077650_-	pfam18741, MTES_1575, REase_MTES_1575	NA|135aa|up_0|NZ_CP010114.1_1077783_1078188_-	pfam01641, SelR, SelR domain	NA|429aa|down_0|NZ_CP010114.1_1078355_1079642_-	pfam09594, GT87, Glycosyltransferase family 87	NA|520aa|down_1|NZ_CP010114.1_1079670_1081230_-	pfam08386, Abhydrolase_4, TAP-like protein	NA|255aa|down_2|NZ_CP010114.1_1081244_1082009_-	PRK14059, PRK14059, pyrimidine reductase family protein	NA|374aa|down_3|NZ_CP010114.1_1082007_1083129_+	pfam03969, AFG1_ATPase, AFG1-like ATPase	NA|177aa|down_4|NZ_CP010114.1_1083106_1083637_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|176aa|down_5|NZ_CP010114.1_1083624_1084152_-	NA	NA|251aa|down_6|NZ_CP010114.1_1084191_1084944_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|115aa|down_7|NZ_CP010114.1_1085064_1085409_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|115aa|down_8|NZ_CP010114.1_1085608_1085953_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|310aa|down_9|NZ_CP010114.1_1085981_1086911_+	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)
GCF_000835265.1_ASM83526v1	NZ_CP010114	Mycobacterium avium subsp. paratuberculosis strain E93 chromosome, complete genome	3	1107443-1107533	3	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	GACTGCGTCCGACTGCGTCCCACC	24	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA|174aa|up_7|NZ_CP010114.1_1100649_1101171_-,NA|100aa|up_5|NZ_CP010114.1_1101747_1102047_-,NA|155aa|up_4|NZ_CP010114.1_1102506_1102971_-,NA|113aa|up_3|NZ_CP010114.1_1103134_1103473_-,NA|184aa|up_2|NZ_CP010114.1_1104962_1105514_+,NA|97aa|down_0|NZ_CP010114.1_1107944_1108235_+,NA|75aa|down_1|NZ_CP010114.1_1108577_1108802_+,NA|80aa|down_3|NZ_CP010114.1_1109724_1109964_+,NA|145aa|down_4|NZ_CP010114.1_1109956_1110391_+,NA|77aa|down_5|NZ_CP010114.1_1110459_1110690_+,NA|61aa|down_6|NZ_CP010114.1_1110919_1111102_+,NA|173aa|down_8|NZ_CP010114.1_1111755_1112274_-,NA|84aa|down_9|NZ_CP010114.1_1112270_1112522_-	NA|405aa|up_9|NZ_CP010114.1_1098134_1099349_+	pfam04909, Amidohydro_2, Amidohydrolase	NA|426aa|up_8|NZ_CP010114.1_1099364_1100642_+	pfam04909, Amidohydro_2, Amidohydrolase	NA|174aa|up_7|NZ_CP010114.1_1100649_1101171_-	NA	NA|103aa|up_6|NZ_CP010114.1_1101247_1101556_-	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]	NA|100aa|up_5|NZ_CP010114.1_1101747_1102047_-	NA	NA|155aa|up_4|NZ_CP010114.1_1102506_1102971_-	NA	NA|113aa|up_3|NZ_CP010114.1_1103134_1103473_-	NA	NA|184aa|up_2|NZ_CP010114.1_1104962_1105514_+	NA	NA|71aa|up_1|NZ_CP010114.1_1105608_1105821_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|159aa|up_0|NZ_CP010114.1_1105817_1106294_+	pfam10888, DUF2742, Protein of unknown function (DUF2742)	NA|97aa|down_0|NZ_CP010114.1_1107944_1108235_+	NA	NA|75aa|down_1|NZ_CP010114.1_1108577_1108802_+	NA	NA|147aa|down_2|NZ_CP010114.1_1108801_1109242_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|80aa|down_3|NZ_CP010114.1_1109724_1109964_+	NA	NA|145aa|down_4|NZ_CP010114.1_1109956_1110391_+	NA	NA|77aa|down_5|NZ_CP010114.1_1110459_1110690_+	NA	NA|61aa|down_6|NZ_CP010114.1_1110919_1111102_+	NA	NA|103aa|down_7|NZ_CP010114.1_1111080_1111389_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|173aa|down_8|NZ_CP010114.1_1111755_1112274_-	NA	NA|84aa|down_9|NZ_CP010114.1_1112270_1112522_-	NA
GCF_000835265.1_ASM83526v1	NZ_CP010114	Mycobacterium avium subsp. paratuberculosis strain E93 chromosome, complete genome	4	1281932-1282009	4	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	TGGCCGCCGGCGCGGCGGCCGCCA	24	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA|82aa|up_7|NZ_CP010114.1_1273009_1273255_-,NA|111aa|up_1|NZ_CP010114.1_1278691_1279024_+,NA	NA|373aa|up_9|NZ_CP010114.1_1262794_1263913_+	PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed	NA|795aa|up_8|NZ_CP010114.1_1263994_1266379_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|82aa|up_7|NZ_CP010114.1_1273009_1273255_-	NA	NA|68aa|up_6|NZ_CP010114.1_1273421_1273625_+	pfam09957, VapB_antitoxin, Bacterial antitoxin of type II TA system, VapB	NA|351aa|up_5|NZ_CP010114.1_1273621_1274674_-	pfam00823, PPE, PPE family	NA|396aa|up_4|NZ_CP010114.1_1274748_1275936_-	pfam00823, PPE, PPE family	NA|231aa|up_3|NZ_CP010114.1_1276746_1277439_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|420aa|up_2|NZ_CP010114.1_1277435_1278695_+	PRK04149, sat, sulfate adenylyltransferase; Reviewed	NA|111aa|up_1|NZ_CP010114.1_1278691_1279024_+	NA	NA|580aa|up_0|NZ_CP010114.1_1279034_1280774_-	PRK05850, PRK05850, acyl-CoA synthetase; Validated	NA|531aa|down_0|NZ_CP010114.1_1282849_1284442_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|547aa|down_1|NZ_CP010114.1_1284526_1286167_+	TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate dehydrogenase, group 1	NA|321aa|down_2|NZ_CP010114.1_1286166_1287129_+	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism]	NA|201aa|down_3|NZ_CP010114.1_1287221_1287824_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|390aa|down_4|NZ_CP010114.1_1287844_1289014_-	PRK07855, PRK07855, lipid-transfer protein; Provisional	NA|154aa|down_5|NZ_CP010114.1_1289010_1289472_-	cd03455, SAV4209, SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|374aa|down_6|NZ_CP010114.1_1289468_1290590_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|135aa|down_7|NZ_CP010114.1_1290597_1291002_-	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|182aa|down_8|NZ_CP010114.1_1291001_1291547_-	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase	NA|395aa|down_9|NZ_CP010114.1_1291566_1292751_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26
GCF_000835265.1_ASM83526v1	NZ_CP010114	Mycobacterium avium subsp. paratuberculosis strain E93 chromosome, complete genome	5	2033852-2033953	5	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	GCGTGACGCTCGACGGGCGCGGCGGAATGACGCTCG	36	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA|114aa|up_1|NZ_CP010114.1_2032800_2033142_-,NA|226aa|down_9|NZ_CP010114.1_2043593_2044271_-	NA|479aa|up_9|NZ_CP010114.1_2023452_2024889_-	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|141aa|up_8|NZ_CP010114.1_2025133_2025556_+	pfam06271, RDD, RDD family	NA|251aa|up_7|NZ_CP010114.1_2025614_2026367_-	pfam13829, DUF4191, Domain of unknown function (DUF4191)	NA|308aa|up_6|NZ_CP010114.1_2026395_2027319_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|234aa|up_5|NZ_CP010114.1_2027315_2028017_-	PRK14345, PRK14345, lipoyl(octanoyl) transferase LipB	NA|308aa|up_4|NZ_CP010114.1_2028066_2028990_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|583aa|up_3|NZ_CP010114.1_2029006_2030755_-	TIGR02927, putative_dihydrolipoamide_acyltransferase, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	NA|593aa|up_2|NZ_CP010114.1_2030978_2032757_+	PRK05855, PRK05855, SDR family oxidoreductase	NA|114aa|up_1|NZ_CP010114.1_2032800_2033142_-	NA	NA|150aa|up_0|NZ_CP010114.1_2033290_2033740_+	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|516aa|down_0|NZ_CP010114.1_2033981_2035529_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|368aa|down_1|NZ_CP010114.1_2036306_2037410_+	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|372aa|down_2|NZ_CP010114.1_2037464_2038580_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|252aa|down_3|NZ_CP010114.1_2038787_2039543_-	PRK00235, cobS, cobalamin synthase; Reviewed	NA|350aa|down_4|NZ_CP010114.1_2039539_2040589_-	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed	NA|179aa|down_5|NZ_CP010114.1_2040588_2041125_-	cd00544, CobU, Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)	NA|231aa|down_6|NZ_CP010114.1_2041152_2041845_-	pfam11241, DUF3043, Protein of unknown function (DUF3043)	NA|359aa|down_7|NZ_CP010114.1_2042036_2043113_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|119aa|down_8|NZ_CP010114.1_2043210_2043567_+	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]	NA|226aa|down_9|NZ_CP010114.1_2043593_2044271_-	NA
GCF_000835265.1_ASM83526v1	NZ_CP010114	Mycobacterium avium subsp. paratuberculosis strain E93 chromosome, complete genome	6	2248733-2248839	6	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	CGTTCGAGTGCCGCTTCGGCGTACGGCGCGCCGCGTTCGGC	41	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA|203aa|up_8|NZ_CP010114.1_2239828_2240437_+,NA|227aa|up_5|NZ_CP010114.1_2242488_2243169_-,NA	NA|361aa|up_9|NZ_CP010114.1_2238106_2239189_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|203aa|up_8|NZ_CP010114.1_2239828_2240437_+	NA	NA|210aa|up_7|NZ_CP010114.1_2240444_2241074_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|408aa|up_6|NZ_CP010114.1_2241167_2242391_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|227aa|up_5|NZ_CP010114.1_2242488_2243169_-	NA	NA|506aa|up_4|NZ_CP010114.1_2243248_2244766_+	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|666aa|up_3|NZ_CP010114.1_2244784_2246782_+	pfam02958, EcKinase, Ecdysteroid kinase	NA|165aa|up_2|NZ_CP010114.1_2246778_2247273_+	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]	NA|130aa|up_1|NZ_CP010114.1_2247353_2247743_+	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system	NA|193aa|up_0|NZ_CP010114.1_2247773_2248352_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|187aa|down_0|NZ_CP010114.1_2249534_2250095_+	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|267aa|down_1|NZ_CP010114.1_2250094_2250895_+	pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain	NA|117aa|down_2|NZ_CP010114.1_2250908_2251259_-	pfam13564, DoxX_2, DoxX-like family	NA|312aa|down_3|NZ_CP010114.1_2251952_2252888_+	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|443aa|down_4|NZ_CP010114.1_2252953_2254282_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|315aa|down_5|NZ_CP010114.1_2254278_2255223_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|281aa|down_6|NZ_CP010114.1_2255209_2256052_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|357aa|down_7|NZ_CP010114.1_2256054_2257125_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|323aa|down_8|NZ_CP010114.1_2257132_2258101_+	cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2	NA|96aa|down_9|NZ_CP010114.1_2258126_2258414_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)
GCF_000835265.1_ASM83526v1	NZ_CP010114	Mycobacterium avium subsp. paratuberculosis strain E93 chromosome, complete genome	7	2322129-2322227	7	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	CGGTTGCGGCCCGACCCCCAGCGG	24	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA,NA	NA|268aa|up_9|NZ_CP010114.1_2313673_2314477_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|196aa|up_8|NZ_CP010114.1_2314590_2315178_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|295aa|up_7|NZ_CP010114.1_2315198_2316083_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|607aa|up_6|NZ_CP010114.1_2316227_2318048_+	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|218aa|up_5|NZ_CP010114.1_2318071_2318725_-	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family	NA|237aa|up_4|NZ_CP010114.1_2318770_2319481_-	PRK07577, PRK07577, SDR family oxidoreductase	NA|146aa|up_3|NZ_CP010114.1_2319662_2320100_-	pfam00553, CBM_2, Cellulose binding domain	NA|281aa|up_2|NZ_CP010114.1_2320323_2321166_+	pfam12833, HTH_18, Helix-turn-helix domain	NA|134aa|up_1|NZ_CP010114.1_2321119_2321521_+	cd08355, TioX_like, Micromonospora sp	NA|104aa|up_0|NZ_CP010114.1_2321671_2321983_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|152aa|down_0|NZ_CP010114.1_2322369_2322825_+	pfam05988, DUF899, Bacterial protein of unknown function (DUF899)	NA|492aa|down_1|NZ_CP010114.1_2323021_2324497_+	PRK06524, PRK06524, biotin carboxylase-like protein; Validated	NA|392aa|down_2|NZ_CP010114.1_2324493_2325669_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|410aa|down_3|NZ_CP010114.1_2325665_2326895_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|145aa|down_4|NZ_CP010114.1_2327068_2327503_+	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|127aa|down_5|NZ_CP010114.1_2327563_2327944_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|143aa|down_6|NZ_CP010114.1_2328049_2328478_+	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|107aa|down_7|NZ_CP010114.1_2328790_2329111_+	pfam00226, DnaJ, DnaJ domain	NA|515aa|down_8|NZ_CP010114.1_2329164_2330709_-	pfam00668, Condensation, Condensation domain	NA|186aa|down_9|NZ_CP010114.1_2331220_2331778_+	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
GCF_000835265.1_ASM83526v1	NZ_CP010114	Mycobacterium avium subsp. paratuberculosis strain E93 chromosome, complete genome	8	2991691-2991771	8	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	CCGCCCTACCCCGCTTCGCGGCG	23	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA,NA	NA|489aa|up_9|NZ_CP010114.1_2982611_2984078_+	pfam00823, PPE, PPE family	NA|113aa|up_8|NZ_CP010114.1_2984181_2984520_+	TIGR04529, hypothetical_protein, hemophore-related protein, Rv0203/Rv1174c family	NA|155aa|up_7|NZ_CP010114.1_2984553_2985018_-	pfam10756, bPH_6, Bacterial PH domain	NA|161aa|up_6|NZ_CP010114.1_2985014_2985497_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|426aa|up_5|NZ_CP010114.1_2985546_2986824_-	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|200aa|up_4|NZ_CP010114.1_2986945_2987545_-	PRK09289, PRK09289, riboflavin synthase	NA|236aa|up_3|NZ_CP010114.1_2987663_2988371_+	pfam07161, LppX_LprAFG, LppX_LprAFG lipoprotein	NA|519aa|up_2|NZ_CP010114.1_2988367_2989924_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|342aa|up_1|NZ_CP010114.1_2989920_2990946_-	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|236aa|up_0|NZ_CP010114.1_2990942_2991650_-	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated	NA|316aa|down_0|NZ_CP010114.1_2993144_2994092_-	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|275aa|down_1|NZ_CP010114.1_2994249_2995074_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|162aa|down_2|NZ_CP010114.1_2995079_2995565_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|651aa|down_3|NZ_CP010114.1_2995675_2997628_-	PRK14873, PRK14873, primosomal protein N'	NA|264aa|down_4|NZ_CP010114.1_2997712_2998504_-	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|321aa|down_5|NZ_CP010114.1_2998502_2999465_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|497aa|down_6|NZ_CP010114.1_2999510_3001001_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|404aa|down_7|NZ_CP010114.1_3001150_3002362_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|421aa|down_8|NZ_CP010114.1_3002458_3003721_-	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|109aa|down_9|NZ_CP010114.1_3003742_3004069_-	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit
GCF_000835265.1_ASM83526v1	NZ_CP010114	Mycobacterium avium subsp. paratuberculosis strain E93 chromosome, complete genome	9	4598694-4598801	9	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	CGGCCAAGAAGGCACCGGCCAAGA	24	1	2	4598718-4598735|4598718-4598735	NZ_CP010114.1_3982544-3982561|NZ_CP010114.1_2248691-2248674	NA	2	2	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA,NA	NA|244aa|up_9|NZ_CP010114.1_4590503_4591235_+	TIGR03964, uncharacterized_protein_putative_amidase, mycofactocin system creatininase family protein	NA|473aa|up_8|NZ_CP010114.1_4591231_4592650_+	TIGR03965, glycosyltransferase_Rv0696_family, mycofactocin system glycosyltransferase	NA|480aa|up_7|NZ_CP010114.1_4592659_4594099_+	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	NA|198aa|up_6|NZ_CP010114.1_4594252_4594846_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|102aa|up_5|NZ_CP010114.1_4595197_4595503_+	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed	NA|218aa|up_4|NZ_CP010114.1_4595517_4596171_+	PRK00001, rplC, 50S ribosomal protein L3; Validated	NA|218aa|up_3|NZ_CP010114.1_4596170_4596824_+	PRK05319, rplD, 50S ribosomal protein L4; Provisional	NA|101aa|up_2|NZ_CP010114.1_4596823_4597126_+	PRK05738, rplW, 50S ribosomal protein L23; Reviewed	NA|281aa|up_1|NZ_CP010114.1_4597148_4597991_+	PRK09374, rplB, 50S ribosomal protein L2; Validated	NA|94aa|up_0|NZ_CP010114.1_4598018_4598300_+	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed	NA|281aa|down_0|NZ_CP010114.1_4598838_4599681_+	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed	NA|139aa|down_1|NZ_CP010114.1_4599684_4600101_+	PRK09203, rplP, 50S ribosomal protein L16; Reviewed	NA|78aa|down_2|NZ_CP010114.1_4600100_4600334_+	PRK00306, PRK00306, 50S ribosomal protein L29; Reviewed	NA|117aa|down_3|NZ_CP010114.1_4600333_4600684_+	PRK05610, rpsQ, 30S ribosomal protein S17; Reviewed	NA|790aa|down_4|NZ_CP010114.1_4600774_4603144_+	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins	NA|376aa|down_5|NZ_CP010114.1_4603155_4604283_-	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88	NA|314aa|down_6|NZ_CP010114.1_4604550_4605492_+	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|297aa|down_7|NZ_CP010114.1_4605520_4606411_+	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|296aa|down_8|NZ_CP010114.1_4606594_4607482_+	pfam14494, DUF4436, Domain of unknown function (DUF4436)	NA|501aa|down_9|NZ_CP010114.1_4607569_4609072_+	pfam02720, DUF222, Domain of unknown function (DUF222)
