assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000835225.1_ASM83522v1	NZ_CP010113	Mycobacterium avium subsp. paratuberculosis strain E1 chromosome, complete genome	1	401270-401360	1	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	CCGCCGCGCTGCGGCGGGCATCGTCGCCGGGCT	33	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA,NA|153aa|down_3|NZ_CP010113.1_405507_405966_+,NA|96aa|down_4|NZ_CP010113.1_406171_406459_+	NA|336aa|up_9|NZ_CP010113.1_390149_391157_+	PRK13685, PRK13685, hypothetical protein; Provisional	NA|328aa|up_8|NZ_CP010113.1_391175_392159_-	PRK13685, PRK13685, hypothetical protein; Provisional	NA|438aa|up_7|NZ_CP010113.1_392191_393505_-	PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	NA|291aa|up_6|NZ_CP010113.1_393530_394403_-	pfam04185, Phosphoesterase, Phosphoesterase family	NA|258aa|up_5|NZ_CP010113.1_394525_395299_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|272aa|up_4|NZ_CP010113.1_396735_397551_-	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|206aa|up_3|NZ_CP010113.1_397688_398306_+	pfam01083, Cutinase, Cutinase	NA|401aa|up_2|NZ_CP010113.1_398351_399554_+	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily	NA|393aa|up_1|NZ_CP010113.1_399550_400729_+	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|156aa|up_0|NZ_CP010113.1_400751_401219_-	pfam13772, AIG2_2, AIG2-like family	NA|472aa|down_0|NZ_CP010113.1_401372_402788_+	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed	NA|585aa|down_1|NZ_CP010113.1_402844_404599_+	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|291aa|down_2|NZ_CP010113.1_404595_405468_+	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family	NA|153aa|down_3|NZ_CP010113.1_405507_405966_+	NA	NA|96aa|down_4|NZ_CP010113.1_406171_406459_+	NA	NA|379aa|down_5|NZ_CP010113.1_406690_407827_+	pfam00823, PPE, PPE family	NA|118aa|down_6|NZ_CP010113.1_409427_409781_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|306aa|down_7|NZ_CP010113.1_409972_410890_+	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|251aa|down_8|NZ_CP010113.1_410886_411639_-	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]	NA|220aa|down_9|NZ_CP010113.1_416278_416938_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family
GCF_000835225.1_ASM83522v1	NZ_CP010113	Mycobacterium avium subsp. paratuberculosis strain E1 chromosome, complete genome	2	924022-924102	2	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	GCCGCCGAAGGCGGGTAGCTGGA	23	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA|59aa|up_7|NZ_CP010113.1_917020_917197_-,NA|80aa|up_3|NZ_CP010113.1_920000_920240_-,NA	NA|138aa|up_9|NZ_CP010113.1_915617_916031_+	pfam06150, ChaB, ChaB	NA|280aa|up_8|NZ_CP010113.1_916121_916961_-	cd05355, SDR_c1, classical (c) SDR, subgroup 1	NA|59aa|up_7|NZ_CP010113.1_917020_917197_-	NA	NA|191aa|up_6|NZ_CP010113.1_917506_918079_+	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|323aa|up_5|NZ_CP010113.1_918144_919113_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|232aa|up_4|NZ_CP010113.1_919136_919832_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|80aa|up_3|NZ_CP010113.1_920000_920240_-	NA	NA|266aa|up_2|NZ_CP010113.1_920571_921369_+	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|186aa|up_1|NZ_CP010113.1_921384_921942_+	PRK00083, frr, ribosome recycling factor; Reviewed	NA|312aa|up_0|NZ_CP010113.1_921974_922910_+	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|168aa|down_0|NZ_CP010113.1_924169_924673_+	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	NA|85aa|down_1|NZ_CP010113.1_925532_925787_-	pfam10939, DUF2631, Protein of unknown function (DUF2631)	NA|408aa|down_2|NZ_CP010113.1_925908_927132_+	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|408aa|down_3|NZ_CP010113.1_927151_928375_+	pfam02163, Peptidase_M50, Peptidase family M50	NA|389aa|down_4|NZ_CP010113.1_928407_929574_+	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|285aa|down_5|NZ_CP010113.1_929622_930477_+	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|606aa|down_6|NZ_CP010113.1_930605_932423_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|196aa|down_7|NZ_CP010113.1_932468_933056_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|286aa|down_8|NZ_CP010113.1_933087_933945_+	PRK12896, PRK12896, methionine aminopeptidase; Reviewed	NA|498aa|down_9|NZ_CP010113.1_933949_935443_+	PRK00784, PRK00784, cobyric acid synthase
GCF_000835225.1_ASM83522v1	NZ_CP010113	Mycobacterium avium subsp. paratuberculosis strain E1 chromosome, complete genome	3	1077088-1077168	3	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	CGCTAATGGCGGTGACCCGCTGCGCC	26	1	1	1077114-1077142	NZ_CP010113.1_347630-347602	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA,NA|176aa|down_5|NZ_CP010113.1_1082458_1082986_-	NA|642aa|up_9|NZ_CP010113.1_1066821_1068747_+	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|429aa|up_8|NZ_CP010113.1_1068791_1070078_-	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]	NA|206aa|up_7|NZ_CP010113.1_1070079_1070697_-	pfam11452, DUF3000, Protein of unknown function (DUF3000)	NA|274aa|up_6|NZ_CP010113.1_1070824_1071646_-	PRK07327, PRK07327, enoyl-CoA hydratase/isomerase family protein	NA|358aa|up_5|NZ_CP010113.1_1071693_1072767_+	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|452aa|up_4|NZ_CP010113.1_1072763_1074119_+	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|232aa|up_3|NZ_CP010113.1_1074124_1074820_+	COG3253, ywfI, Predicted heme peroxidase involved in anaerobic stress response [General function prediction only]	NA|251aa|up_2|NZ_CP010113.1_1074816_1075569_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|283aa|up_1|NZ_CP010113.1_1075635_1076484_-	pfam18741, MTES_1575, REase_MTES_1575	NA|135aa|up_0|NZ_CP010113.1_1076617_1077022_-	pfam01641, SelR, SelR domain	NA|429aa|down_0|NZ_CP010113.1_1077189_1078476_-	pfam09594, GT87, Glycosyltransferase family 87	NA|520aa|down_1|NZ_CP010113.1_1078504_1080064_-	pfam08386, Abhydrolase_4, TAP-like protein	NA|255aa|down_2|NZ_CP010113.1_1080078_1080843_-	PRK14059, PRK14059, pyrimidine reductase family protein	NA|374aa|down_3|NZ_CP010113.1_1080841_1081963_+	pfam03969, AFG1_ATPase, AFG1-like ATPase	NA|177aa|down_4|NZ_CP010113.1_1081940_1082471_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|176aa|down_5|NZ_CP010113.1_1082458_1082986_-	NA	NA|251aa|down_6|NZ_CP010113.1_1083025_1083778_-	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|115aa|down_7|NZ_CP010113.1_1083898_1084243_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|115aa|down_8|NZ_CP010113.1_1084442_1084787_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|310aa|down_9|NZ_CP010113.1_1084815_1085745_+	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)
GCF_000835225.1_ASM83522v1	NZ_CP010113	Mycobacterium avium subsp. paratuberculosis strain E1 chromosome, complete genome	4	1106279-1106369	4	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	GACTGCGTCCGACTGCGTCCCACC	24	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA|174aa|up_7|NZ_CP010113.1_1099485_1100007_-,NA|100aa|up_5|NZ_CP010113.1_1100583_1100883_-,NA|155aa|up_4|NZ_CP010113.1_1101342_1101807_-,NA|113aa|up_3|NZ_CP010113.1_1101970_1102309_-,NA|184aa|up_2|NZ_CP010113.1_1103798_1104350_+,NA|97aa|down_0|NZ_CP010113.1_1106780_1107071_+,NA|75aa|down_1|NZ_CP010113.1_1107413_1107638_+,NA|80aa|down_3|NZ_CP010113.1_1108560_1108800_+,NA|145aa|down_4|NZ_CP010113.1_1108792_1109227_+,NA|77aa|down_5|NZ_CP010113.1_1109295_1109526_+,NA|61aa|down_6|NZ_CP010113.1_1109755_1109938_+,NA|173aa|down_8|NZ_CP010113.1_1110591_1111110_-,NA|84aa|down_9|NZ_CP010113.1_1111106_1111358_-	NA|405aa|up_9|NZ_CP010113.1_1096970_1098185_+	pfam04909, Amidohydro_2, Amidohydrolase	NA|426aa|up_8|NZ_CP010113.1_1098200_1099478_+	pfam04909, Amidohydro_2, Amidohydrolase	NA|174aa|up_7|NZ_CP010113.1_1099485_1100007_-	NA	NA|103aa|up_6|NZ_CP010113.1_1100083_1100392_-	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]	NA|100aa|up_5|NZ_CP010113.1_1100583_1100883_-	NA	NA|155aa|up_4|NZ_CP010113.1_1101342_1101807_-	NA	NA|113aa|up_3|NZ_CP010113.1_1101970_1102309_-	NA	NA|184aa|up_2|NZ_CP010113.1_1103798_1104350_+	NA	NA|71aa|up_1|NZ_CP010113.1_1104444_1104657_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|159aa|up_0|NZ_CP010113.1_1104653_1105130_+	pfam10888, DUF2742, Protein of unknown function (DUF2742)	NA|97aa|down_0|NZ_CP010113.1_1106780_1107071_+	NA	NA|75aa|down_1|NZ_CP010113.1_1107413_1107638_+	NA	NA|147aa|down_2|NZ_CP010113.1_1107637_1108078_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|80aa|down_3|NZ_CP010113.1_1108560_1108800_+	NA	NA|145aa|down_4|NZ_CP010113.1_1108792_1109227_+	NA	NA|77aa|down_5|NZ_CP010113.1_1109295_1109526_+	NA	NA|61aa|down_6|NZ_CP010113.1_1109755_1109938_+	NA	NA|103aa|down_7|NZ_CP010113.1_1109916_1110225_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|173aa|down_8|NZ_CP010113.1_1110591_1111110_-	NA	NA|84aa|down_9|NZ_CP010113.1_1111106_1111358_-	NA
GCF_000835225.1_ASM83522v1	NZ_CP010113	Mycobacterium avium subsp. paratuberculosis strain E1 chromosome, complete genome	5	1280296-1280373	5	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	TGGCCGCCGGCGCGGCGGCCGCCA	24	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA|82aa|up_7|NZ_CP010113.1_1271361_1271607_-,NA	NA|373aa|up_9|NZ_CP010113.1_1261159_1262278_+	PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase; Reviewed	NA|795aa|up_8|NZ_CP010113.1_1262359_1264744_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|82aa|up_7|NZ_CP010113.1_1271361_1271607_-	NA	NA|68aa|up_6|NZ_CP010113.1_1271773_1271977_+	pfam09957, VapB_antitoxin, Bacterial antitoxin of type II TA system, VapB	NA|348aa|up_5|NZ_CP010113.1_1271973_1273017_-	pfam00823, PPE, PPE family	NA|396aa|up_4|NZ_CP010113.1_1273091_1274279_-	pfam00823, PPE, PPE family	NA|231aa|up_3|NZ_CP010113.1_1275089_1275782_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|420aa|up_2|NZ_CP010113.1_1275778_1277038_+	PRK04149, sat, sulfate adenylyltransferase; Reviewed	NA|111aa|up_1|NZ_CP010113.1_1277034_1277367_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|580aa|up_0|NZ_CP010113.1_1277377_1279117_-	PRK05850, PRK05850, acyl-CoA synthetase; Validated	NA|531aa|down_0|NZ_CP010113.1_1281213_1282806_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|547aa|down_1|NZ_CP010113.1_1282890_1284531_+	TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate dehydrogenase, group 1	NA|321aa|down_2|NZ_CP010113.1_1284530_1285493_+	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism]	NA|201aa|down_3|NZ_CP010113.1_1285585_1286188_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|390aa|down_4|NZ_CP010113.1_1286208_1287378_-	PRK07855, PRK07855, lipid-transfer protein; Provisional	NA|154aa|down_5|NZ_CP010113.1_1287374_1287836_-	cd03455, SAV4209, SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|374aa|down_6|NZ_CP010113.1_1287832_1288954_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|135aa|down_7|NZ_CP010113.1_1288961_1289366_-	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|182aa|down_8|NZ_CP010113.1_1289365_1289911_-	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase	NA|395aa|down_9|NZ_CP010113.1_1289930_1291115_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26
GCF_000835225.1_ASM83522v1	NZ_CP010113	Mycobacterium avium subsp. paratuberculosis strain E1 chromosome, complete genome	6	2031684-2031785	6	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	GCGTGACGCTCGACGGGCGCGGCGGAATGACGCTCG	36	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA|114aa|up_1|NZ_CP010113.1_2030632_2030974_-,NA|226aa|down_8|NZ_CP010113.1_2041377_2042055_-	NA|479aa|up_9|NZ_CP010113.1_2021260_2022697_-	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|141aa|up_8|NZ_CP010113.1_2022941_2023364_+	pfam06271, RDD, RDD family	NA|251aa|up_7|NZ_CP010113.1_2023422_2024175_-	pfam13829, DUF4191, Domain of unknown function (DUF4191)	NA|308aa|up_6|NZ_CP010113.1_2024203_2025127_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|234aa|up_5|NZ_CP010113.1_2025123_2025825_-	PRK14345, PRK14345, lipoyl(octanoyl) transferase LipB	NA|308aa|up_4|NZ_CP010113.1_2025874_2026798_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|591aa|up_3|NZ_CP010113.1_2026814_2028587_-	TIGR02927, putative_dihydrolipoamide_acyltransferase, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase	NA|593aa|up_2|NZ_CP010113.1_2028810_2030589_+	PRK05855, PRK05855, SDR family oxidoreductase	NA|114aa|up_1|NZ_CP010113.1_2030632_2030974_-	NA	NA|150aa|up_0|NZ_CP010113.1_2031122_2031572_+	cd07812, SRPBCC, START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily	NA|516aa|down_0|NZ_CP010113.1_2031813_2033361_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|368aa|down_1|NZ_CP010113.1_2034177_2035281_+	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|372aa|down_2|NZ_CP010113.1_2035335_2036451_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|350aa|down_3|NZ_CP010113.1_2037353_2038403_-	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed	NA|175aa|down_4|NZ_CP010113.1_2038402_2038927_-	cd00544, CobU, Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)	NA|225aa|down_5|NZ_CP010113.1_2038954_2039629_-	pfam11241, DUF3043, Protein of unknown function (DUF3043)	NA|359aa|down_6|NZ_CP010113.1_2039820_2040897_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|119aa|down_7|NZ_CP010113.1_2040994_2041351_+	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]	NA|226aa|down_8|NZ_CP010113.1_2041377_2042055_-	NA	NA|325aa|down_9|NZ_CP010113.1_2042234_2043209_+	cd01942, ribokinase_group_A, Ribokinase-like subgroup A
GCF_000835225.1_ASM83522v1	NZ_CP010113	Mycobacterium avium subsp. paratuberculosis strain E1 chromosome, complete genome	7	2246148-2246254	7	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	CGTTCGAGTGCCGCTTCGGCGTACGGCGCGCCGCGTTCGGC	41	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA|203aa|up_8|NZ_CP010113.1_2237243_2237852_+,NA|227aa|up_5|NZ_CP010113.1_2239903_2240584_-,NA	NA|361aa|up_9|NZ_CP010113.1_2235515_2236598_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|203aa|up_8|NZ_CP010113.1_2237243_2237852_+	NA	NA|210aa|up_7|NZ_CP010113.1_2237859_2238489_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|408aa|up_6|NZ_CP010113.1_2238582_2239806_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|227aa|up_5|NZ_CP010113.1_2239903_2240584_-	NA	NA|506aa|up_4|NZ_CP010113.1_2240663_2242181_+	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|666aa|up_3|NZ_CP010113.1_2242199_2244197_+	pfam02958, EcKinase, Ecdysteroid kinase	NA|165aa|up_2|NZ_CP010113.1_2244193_2244688_+	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]	NA|130aa|up_1|NZ_CP010113.1_2244768_2245158_+	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system	NA|193aa|up_0|NZ_CP010113.1_2245188_2245767_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|187aa|down_0|NZ_CP010113.1_2246949_2247510_+	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|267aa|down_1|NZ_CP010113.1_2247509_2248310_+	pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain	NA|117aa|down_2|NZ_CP010113.1_2248323_2248674_-	pfam13564, DoxX_2, DoxX-like family	NA|312aa|down_3|NZ_CP010113.1_2249366_2250302_+	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|443aa|down_4|NZ_CP010113.1_2250367_2251696_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|315aa|down_5|NZ_CP010113.1_2251692_2252637_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|281aa|down_6|NZ_CP010113.1_2252623_2253466_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|357aa|down_7|NZ_CP010113.1_2253468_2254539_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|323aa|down_8|NZ_CP010113.1_2254546_2255515_+	cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2	NA|96aa|down_9|NZ_CP010113.1_2255540_2255828_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)
GCF_000835225.1_ASM83522v1	NZ_CP010113	Mycobacterium avium subsp. paratuberculosis strain E1 chromosome, complete genome	8	2319457-2319555	8	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	CGGTTGCGGCCCGACCCCCAGCGG	24	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA,NA	NA|268aa|up_9|NZ_CP010113.1_2311001_2311805_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|196aa|up_8|NZ_CP010113.1_2311918_2312506_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|295aa|up_7|NZ_CP010113.1_2312526_2313411_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|607aa|up_6|NZ_CP010113.1_2313555_2315376_+	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|218aa|up_5|NZ_CP010113.1_2315399_2316053_-	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family	NA|237aa|up_4|NZ_CP010113.1_2316098_2316809_-	PRK07577, PRK07577, SDR family oxidoreductase	NA|146aa|up_3|NZ_CP010113.1_2316990_2317428_-	pfam00553, CBM_2, Cellulose binding domain	NA|281aa|up_2|NZ_CP010113.1_2317651_2318494_+	pfam12833, HTH_18, Helix-turn-helix domain	NA|134aa|up_1|NZ_CP010113.1_2318447_2318849_+	cd08355, TioX_like, Micromonospora sp	NA|104aa|up_0|NZ_CP010113.1_2318999_2319311_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|152aa|down_0|NZ_CP010113.1_2319697_2320153_+	pfam05988, DUF899, Bacterial protein of unknown function (DUF899)	NA|492aa|down_1|NZ_CP010113.1_2320349_2321825_+	PRK06524, PRK06524, biotin carboxylase-like protein; Validated	NA|392aa|down_2|NZ_CP010113.1_2321821_2322997_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|410aa|down_3|NZ_CP010113.1_2322993_2324223_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|145aa|down_4|NZ_CP010113.1_2324396_2324831_+	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|127aa|down_5|NZ_CP010113.1_2324891_2325272_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|143aa|down_6|NZ_CP010113.1_2325377_2325806_+	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|107aa|down_7|NZ_CP010113.1_2326118_2326439_+	pfam00226, DnaJ, DnaJ domain	NA|506aa|down_8|NZ_CP010113.1_2326492_2328010_-	pfam00668, Condensation, Condensation domain	NA|186aa|down_9|NZ_CP010113.1_2328548_2329106_+	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
GCF_000835225.1_ASM83522v1	NZ_CP010113	Mycobacterium avium subsp. paratuberculosis strain E1 chromosome, complete genome	9	2988364-2988444	9	CRISPRCasFinder	no		DinG,csa3,cas4,WYL,cas3,DEDDh	Orphan	CCGCCCTACCCCGCTTCGCGGCG	23	0	0	NA	NA	NA	1	1	Orphan	DinG,csa3,cas4,WYL,cas3,DEDDh	NA,NA	NA|394aa|up_9|NZ_CP010113.1_2978030_2979212_+	pfam08007, Cupin_4, Cupin superfamily protein	NA|113aa|up_8|NZ_CP010113.1_2980854_2981193_+	TIGR04529, hypothetical_protein, hemophore-related protein, Rv0203/Rv1174c family	NA|155aa|up_7|NZ_CP010113.1_2981226_2981691_-	pfam10756, bPH_6, Bacterial PH domain	NA|161aa|up_6|NZ_CP010113.1_2981687_2982170_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|426aa|up_5|NZ_CP010113.1_2982219_2983497_-	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|200aa|up_4|NZ_CP010113.1_2983618_2984218_-	PRK09289, PRK09289, riboflavin synthase	NA|236aa|up_3|NZ_CP010113.1_2984336_2985044_+	pfam07161, LppX_LprAFG, LppX_LprAFG lipoprotein	NA|519aa|up_2|NZ_CP010113.1_2985040_2986597_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|342aa|up_1|NZ_CP010113.1_2986593_2987619_-	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|236aa|up_0|NZ_CP010113.1_2987615_2988323_-	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated	NA|316aa|down_0|NZ_CP010113.1_2989807_2990755_-	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|275aa|down_1|NZ_CP010113.1_2990912_2991737_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|162aa|down_2|NZ_CP010113.1_2991742_2992228_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|264aa|down_3|NZ_CP010113.1_2994405_2995197_-	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|321aa|down_4|NZ_CP010113.1_2995195_2996158_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|497aa|down_5|NZ_CP010113.1_2996203_2997694_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|404aa|down_6|NZ_CP010113.1_2997843_2999055_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|421aa|down_7|NZ_CP010113.1_2999151_3000414_-	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|109aa|down_8|NZ_CP010113.1_3000435_3000762_-	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|224aa|down_9|NZ_CP010113.1_3000838_3001510_-	PRK00300, gmk, guanylate kinase; Provisional
