assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000834755.1_ASM83475v1	NZ_CP009840	Yersinia pestis A1122 chromosome 1, complete sequence	1	545744-546252	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,csa3	Type I-F	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTCTAAGCTGCCTGTGCGGCAGTGAAC	28,28,28	2	2	546132-546163|546192-546224	NZ_CP009840.1_140511-140542|NZ_CP009840.1_146423-146391	I-F:I-F:I-F	8,8,7	8	TypeI-F	DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,csa3	NA|70aa|up_9|NZ_CP009840.1_533482_533692_-,NA|425aa|down_1|NZ_CP009840.1_548416_549691_-,NA|372aa|down_2|NZ_CP009840.1_549729_550845_-	NA|70aa|up_9|NZ_CP009840.1_533482_533692_-	NA	NA|453aa|up_8|NZ_CP009840.1_533815_535174_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|168aa|up_7|NZ_CP009840.1_535220_535724_+	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|340aa|up_6|NZ_CP009840.1_535734_536754_+	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	cas6f|185aa|up_5|NZ_CP009840.1_536831_537386_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|335aa|up_4|NZ_CP009840.1_537396_538401_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|317aa|up_3|NZ_CP009840.1_538418_539369_-	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas8f|449aa|up_2|NZ_CP009840.1_539365_540712_-	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	cas3f|1096aa|up_1|NZ_CP009840.1_541119_544407_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|327aa|up_0|NZ_CP009840.1_544403_545384_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|415aa|down_0|NZ_CP009840.1_546589_547834_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|425aa|down_1|NZ_CP009840.1_548416_549691_-	NA	NA|372aa|down_2|NZ_CP009840.1_549729_550845_-	NA	NA|313aa|down_3|NZ_CP009840.1_550967_551906_-	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|352aa|down_4|NZ_CP009840.1_551932_552988_-	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|275aa|down_5|NZ_CP009840.1_553134_553959_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|292aa|down_6|NZ_CP009840.1_553959_554835_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|429aa|down_7|NZ_CP009840.1_554943_556230_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|347aa|down_8|NZ_CP009840.1_556501_557542_+	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|463aa|down_9|NZ_CP009840.1_557558_558947_+	PRK15414, PRK15414, phosphomannomutase
GCF_000834755.1_ASM83475v1	NZ_CP009840	Yersinia pestis A1122 chromosome 1, complete sequence	2	671729-672059	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,csa3	Orphan	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	2	2	671757-671789|672000-672031	NZ_CP009840.1_148763-148795|NZ_CP009840.1_146077-146108	I-F:I-F:I-F	4,5,5	5	Orphan	DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,csa3	NA,NA	NA|165aa|up_9|NZ_CP009840.1_654501_654996_-	PRK05445, PRK05445, YfbU family protein	NA|152aa|up_8|NZ_CP009840.1_655303_655759_-	PRK01816, PRK01816, hypothetical protein; Provisional	NA|401aa|up_7|NZ_CP009840.1_656180_657383_+	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|713aa|up_6|NZ_CP009840.1_657565_659704_+	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed	NA|345aa|up_5|NZ_CP009840.1_659969_661004_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|148aa|up_4|NZ_CP009840.1_661370_661814_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|85aa|up_3|NZ_CP009840.1_661982_662237_+	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|293aa|up_2|NZ_CP009840.1_663499_664378_-	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|1993aa|up_1|NZ_CP009840.1_664434_670413_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|183aa|up_0|NZ_CP009840.1_670819_671368_-	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|285aa|down_0|NZ_CP009840.1_672062_672917_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|509aa|down_1|NZ_CP009840.1_673222_674749_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|642aa|down_2|NZ_CP009840.1_674783_676709_+	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]	NA|310aa|down_3|NZ_CP009840.1_678113_679043_+	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|516aa|down_4|NZ_CP009840.1_679091_680639_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|343aa|down_5|NZ_CP009840.1_680650_681679_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|378aa|down_6|NZ_CP009840.1_681702_682836_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|657aa|down_7|NZ_CP009840.1_682867_684838_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|353aa|down_8|NZ_CP009840.1_684852_685911_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|272aa|down_9|NZ_CP009840.1_685920_686736_+	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
GCF_000834755.1_ASM83475v1	NZ_CP009840	Yersinia pestis A1122 chromosome 1, complete sequence	3	2198781-2198892	3	CRISPRCasFinder	no		DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,csa3	Orphan	AAAGCACATTTGAGCAGCGAGTGAAG	26	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,csa3	NA,NA|90aa|down_2|NZ_CP009840.1_2202770_2203040_-	NA|268aa|up_9|NZ_CP009840.1_2182274_2183078_-	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|443aa|up_8|NZ_CP009840.1_2183142_2184471_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|603aa|up_7|NZ_CP009840.1_2184546_2186355_-	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|206aa|up_6|NZ_CP009840.1_2186520_2187138_-	pfam06438, HasA, Heme-binding protein A (HasA)	NA|831aa|up_5|NZ_CP009840.1_2187359_2189852_-	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|458aa|up_4|NZ_CP009840.1_2190450_2191824_-	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|259aa|up_3|NZ_CP009840.1_2191990_2192767_-	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|335aa|up_2|NZ_CP009840.1_2192932_2193937_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|388aa|up_1|NZ_CP009840.1_2194187_2195351_+	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|879aa|up_0|NZ_CP009840.1_2195724_2198361_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|260aa|down_0|NZ_CP009840.1_2199374_2200154_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|341aa|down_1|NZ_CP009840.1_2200153_2201176_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|90aa|down_2|NZ_CP009840.1_2202770_2203040_-	NA	NA|155aa|down_3|NZ_CP009840.1_2203204_2203669_-	pfam06092, DUF943, Enterobacterial putative membrane protein (DUF943)	NA|59aa|down_4|NZ_CP009840.1_2203652_2203829_-	TIGR03034, TIGR03034, conserved hypothetical protein	NA|474aa|down_5|NZ_CP009840.1_2204750_2206172_+	PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed	NA|816aa|down_6|NZ_CP009840.1_2206334_2208782_-	PRK14986, PRK14986, glycogen phosphorylase; Provisional	NA|477aa|down_7|NZ_CP009840.1_2208950_2210381_-	PRK00654, glgA, glycogen synthase GlgA	NA|663aa|down_8|NZ_CP009840.1_2211888_2213877_-	PRK03705, PRK03705, glycogen debranching protein GlgX	NA|728aa|down_9|NZ_CP009840.1_2213878_2216062_-	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB
GCF_000834755.1_ASM83475v1	NZ_CP009840	Yersinia pestis A1122 chromosome 1, complete sequence	4	4084800-4084921	4	CRISPRCasFinder	no		DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,csa3	Orphan	CTTAATGCCAATATTAATCGACATAATCAATTG	33	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,csa3	NA,NA|73aa|down_0|NZ_CP009840.1_4085277_4085496_+	NA|662aa|up_9|NZ_CP009840.1_4071052_4073038_+	PRK11054, helD, DNA helicase IV; Provisional	NA|155aa|up_8|NZ_CP009840.1_4073098_4073563_-	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|227aa|up_7|NZ_CP009840.1_4073741_4074422_-	PRK03641, PRK03641, DUF2057 family protein	NA|139aa|up_6|NZ_CP009840.1_4074737_4075154_+	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|106aa|up_5|NZ_CP009840.1_4075262_4075580_-	PRK14129, PRK14129, heat shock protein HspQ; Provisional	NA|397aa|up_4|NZ_CP009840.1_4075640_4076831_-	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|93aa|up_3|NZ_CP009840.1_4076924_4077203_+	PRK14426, PRK14426, acylphosphatase; Provisional	NA|110aa|up_2|NZ_CP009840.1_4077254_4077584_-	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]	NA|806aa|up_1|NZ_CP009840.1_4081229_4083647_-	pfam01565, FAD_binding_4, FAD binding domain	NA|249aa|up_0|NZ_CP009840.1_4083800_4084547_-	PRK06172, PRK06172, SDR family oxidoreductase	NA|73aa|down_0|NZ_CP009840.1_4085277_4085496_+	NA	NA|175aa|down_1|NZ_CP009840.1_4085759_4086284_+	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|428aa|down_2|NZ_CP009840.1_4086273_4087557_+	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|246aa|down_3|NZ_CP009840.1_4087558_4088296_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|413aa|down_4|NZ_CP009840.1_4088311_4089550_+	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]	NA|240aa|down_5|NZ_CP009840.1_4089542_4090262_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|251aa|down_6|NZ_CP009840.1_4090263_4091016_+	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated	NA|263aa|down_7|NZ_CP009840.1_4091018_4091807_+	cd05233, SDR_c, classical (c) SDRs	NA|147aa|down_8|NZ_CP009840.1_4091893_4092334_+	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|83aa|down_9|NZ_CP009840.1_4092371_4092620_+	PRK07117, PRK07117, acyl carrier protein; Validated
GCF_000834755.1_ASM83475v1	NZ_CP009840	Yersinia pestis A1122 chromosome 1, complete sequence	5	4211830-4212037	3,5,3	PILER-CR,CRISPRCasFinder,CRT	no	DEDDh	DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,csa3	Unclear	TTTCTAAGCTGCCTGTGCGGCAGTGAAC,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	2,3,3	3	Orphan	DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas3,csa3	NA|16aa|up_7|NZ_CP009840.1_4203490_4203538_-,NA|58aa|down_4|NZ_CP009840.1_4221018_4221192_-	NA|444aa|up_9|NZ_CP009840.1_4200973_4202305_-	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed	NA|300aa|up_8|NZ_CP009840.1_4202308_4203208_-	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|16aa|up_7|NZ_CP009840.1_4203490_4203538_-	NA	NA|276aa|up_6|NZ_CP009840.1_4203913_4204741_+	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|97aa|up_5|NZ_CP009840.1_4204895_4205186_-	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein	NA|332aa|up_4|NZ_CP009840.1_4205574_4206570_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|230aa|up_3|NZ_CP009840.1_4206566_4207256_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|298aa|up_2|NZ_CP009840.1_4207213_4208107_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|364aa|up_1|NZ_CP009840.1_4208392_4209484_+	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|464aa|up_0|NZ_CP009840.1_4209943_4211335_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	DEDDh|477aa|down_0|NZ_CP009840.1_4212071_4213502_-	PRK11779, sbcB, exonuclease I; Provisional	NA|370aa|down_1|NZ_CP009840.1_4213794_4214904_+	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	NA|106aa|down_2|NZ_CP009840.1_4215337_4215655_+	PRK05423, PRK05423, DUF496 family protein	NA|1051aa|down_3|NZ_CP009840.1_4217197_4220350_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|58aa|down_4|NZ_CP009840.1_4221018_4221192_-	NA	NA|435aa|down_5|NZ_CP009840.1_4221374_4222679_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|141aa|down_6|NZ_CP009840.1_4222687_4223110_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|247aa|down_7|NZ_CP009840.1_4223537_4224278_+	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|281aa|down_8|NZ_CP009840.1_4224325_4225168_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|426aa|down_9|NZ_CP009840.1_4225199_4226477_+	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA
