The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009801	Yersinia intermedia strain Y228 chromosome, complete genome	4859749	334006	351896	4859749	tail,protease,plate	Pseudomonas_phage(15.38%)	22	NA	NA
WP_042568275.1|334006_334483_-|tail	phage tail protein	tail	F1BUP0	Erwinia_phage	49.4	1.4e-42
WP_042568276.1|335244_335841_-	YmfQ family protein	NA	A0A2P9JZK7	Alteromonadaceae_phage	37.8	8.1e-32
WP_042568277.1|335837_336974_-|plate	baseplate J/gp47 family protein	plate	B5TK75	Pseudomonas_phage	30.5	1.0e-30
WP_042568278.1|336977_337415_-	hypothetical protein	NA	A0A0C4UR04	Shigella_phage	46.2	2.9e-18
WP_042568279.1|337414_338008_-|plate	baseplate assembly protein	plate	NA	NA	NA	NA
WP_042568280.1|338023_339094_-|tail	tail protein	tail	M4M9L5	Vibrio_phage	29.8	1.5e-39
WP_042568281.1|339090_340497_-	hypothetical protein	NA	Q8SBG8	Shigella_phage	32.8	5.4e-18
WP_052491269.1|340600_341947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042568283.1|342067_342367_-|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_042568284.1|342368_342737_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_042568285.1|342778_344287_-|tail	tail protein	tail	B5TK67	Pseudomonas_phage	45.8	3.9e-107
WP_071843434.1|344313_344478_-	DUF2635 domain-containing protein	NA	NA	NA	NA	NA
WP_042568286.1|344482_345013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144405110.1|345110_345308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042568287.1|345321_345651_-	DUF2570 domain-containing protein	NA	NA	NA	NA	NA
WP_042568288.1|345647_346163_-	lysozyme	NA	A0A2H4JCH1	uncultured_Caudovirales_phage	59.0	5.0e-54
WP_042568289.1|346164_346443_-	hypothetical protein	NA	H6WRZ3	Salmonella_phage	47.2	1.6e-14
WP_042568290.1|346705_347185_-	antitermination protein Q	NA	K7PGW2	Enterobacterial_phage	61.6	1.6e-38
WP_042568291.1|347449_348172_+	LexA family transcriptional regulator	NA	F1C599	Cronobacter_phage	51.1	6.3e-63
WP_005190119.1|348421_348664_+	DinI family protein	NA	K7PKM2	Enterobacterial_phage	70.9	1.7e-25
WP_042568292.1|348834_349776_+|protease	omptin family outer membrane protease	protease	NA	NA	NA	NA
WP_042568293.1|350108_351896_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	48.4	1.8e-10
>prophage 2
NZ_CP009801	Yersinia intermedia strain Y228 chromosome, complete genome	4859749	574597	583443	4859749		Escherichia_phage(71.43%)	10	NA	NA
WP_042568368.1|574597_577024_+	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	56.0	2.5e-265
WP_005183646.1|577035_577653_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	70.2	3.4e-89
WP_042568369.1|577654_578431_+	dimethyl sulfoxide reductase anchor subunit	NA	A0A077SK59	Escherichia_phage	42.2	1.7e-42
WP_042568370.1|578534_579149_+	molecular chaperone	NA	A0A077SLS7	Escherichia_phage	48.2	4.3e-44
WP_042568371.1|579145_579691_+	(Fe-S)-binding protein	NA	NA	NA	NA	NA
WP_042568372.1|579787_580219_+	hypothetical protein	NA	Q7Y3V7	Yersinia_phage	49.3	3.9e-28
WP_098057507.1|580728_580803_+	membrane protein YpdK	NA	NA	NA	NA	NA
WP_005183662.1|580861_581386_-	cytochrome b	NA	A0A0U2QLA7	Escherichia_phage	51.0	7.6e-26
WP_005183665.1|581561_582797_-	alanine transaminase	NA	NA	NA	NA	NA
WP_032906013.1|582933_583443_-	GNAT family N-acetyltransferase	NA	D0R097	Streptococcus_phage	29.8	4.4e-10
>prophage 3
NZ_CP009801	Yersinia intermedia strain Y228 chromosome, complete genome	4859749	813624	819397	4859749	tail	Cronobacter_phage(50.0%)	6	NA	NA
WP_032907022.1|813624_814107_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	44.9	2.2e-27
WP_052491273.1|814913_815339_-|tail	tail fiber assembly protein	tail	A0A2P1JUG3	Erwinia_phage	51.9	6.0e-13
WP_071843440.1|816281_818111_-|tail	phage tail tape measure protein	tail	F1BUK9	Cronobacter_phage	57.7	1.9e-140
WP_004389570.1|818298_818565_-	hypothetical protein	NA	A5X9I7	Aeromonas_virus	53.7	5.1e-18
WP_005171215.1|818714_819056_-	hypothetical protein	NA	F1BUL2	Cronobacter_phage	42.7	3.3e-14
WP_042570020.1|819055_819397_-	M15 family metallopeptidase	NA	F1BUL3	Cronobacter_phage	81.2	2.4e-44
>prophage 4
NZ_CP009801	Yersinia intermedia strain Y228 chromosome, complete genome	4859749	1040543	1048665	4859749	integrase	uncultured_Mediterranean_phage(33.33%)	6	1033771:1033784	1043045:1043058
1033771:1033784	attL	CAATCGAGAATAGC	NA	NA	NA	NA
WP_042568531.1|1040543_1042004_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0R6PGY7	Moraxella_phage	24.7	7.3e-18
WP_042568532.1|1042162_1044724_+	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	24.4	1.3e-25
1043045:1043058	attR	GCTATTCTCGATTG	NA	NA	NA	NA
WP_005181660.1|1044830_1045829_-	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.3	3.6e-32
WP_005181658.1|1045883_1046849_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	32.8	1.3e-07
WP_042568533.1|1047266_1047893_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	51.2	4.8e-35
WP_032905553.1|1047915_1048665_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	7.0e-65
>prophage 5
NZ_CP009801	Yersinia intermedia strain Y228 chromosome, complete genome	4859749	3928989	3941038	4859749		Herpes_simplex_virus(16.67%)	7	NA	NA
WP_042569582.1|3928989_3932151_-	beta-galactosidase	NA	L0N6M2	Herpes_simplex_virus	62.5	0.0e+00
WP_042569583.1|3932312_3933347_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	52.7	1.1e-87
WP_002210893.1|3933828_3934041_+	transcription antiterminator/RNA stability regulator CspE	NA	A0A1W6JNX5	Morganella_phage	80.0	2.0e-25
WP_071843602.1|3934214_3934478_+	protein DsrB	NA	NA	NA	NA	NA
WP_005192490.1|3934606_3936346_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	31.8	5.9e-14
WP_005192492.1|3937413_3938112_+	MgtC family protein	NA	G3MA03	Bacillus_virus	40.3	1.8e-14
WP_042569584.1|3938338_3941038_+	magnesium-translocating P-type ATPase	NA	M1HLC0	Paramecium_bursaria_Chlorella_virus	25.7	1.0e-41
>prophage 6
NZ_CP009801	Yersinia intermedia strain Y228 chromosome, complete genome	4859749	4601213	4651951	4859749	coat,holin,tRNA,terminase,tail	Escherichia_phage(23.81%)	60	NA	NA
WP_042569833.1|4601213_4603601_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	A0A1L3IZU3	BeAn_58058_virus	25.8	4.3e-07
WP_005182843.1|4603614_4604598_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.0	3.8e-34
WP_004706556.1|4605065_4605422_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_004713020.1|4605459_4605657_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_011816226.1|4605752_4606304_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.7	3.4e-16
WP_005182845.1|4606307_4608236_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.8	9.7e-127
WP_042569834.1|4610165_4611170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042569835.1|4611169_4614373_-	host specificity protein J	NA	F1C571	Cronobacter_phage	61.0	0.0e+00
WP_042569836.1|4614738_4614936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042569837.1|4614977_4615595_-|tail	tail assembly protein	tail	Q6UAW2	Klebsiella_phage	58.7	4.1e-55
WP_144405152.1|4615653_4616037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052491296.1|4616051_4616945_-	hypothetical protein	NA	A0A2I7RZ71	Vibrio_phage	50.0	5.5e-08
WP_080774723.1|4617031_4617421_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_052491297.1|4617516_4618776_+	hypothetical protein	NA	A0A2I6TCD0	Escherichia_phage	67.0	6.1e-37
WP_042569840.1|4618862_4619318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042569841.1|4619613_4620483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042569842.1|4620479_4621283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042569843.1|4621369_4622071_-	peptidase P60	NA	K7P6F5	Enterobacteria_phage	77.3	5.7e-109
WP_042569844.1|4622073_4622826_-|tail	phage minor tail protein L	tail	A0A1W6JNX9	Morganella_phage	67.7	8.0e-101
WP_019209153.1|4622842_4623184_-	hypothetical protein	NA	I6PBN7	Cronobacter_phage	53.0	1.6e-29
WP_042569845.1|4623186_4626222_-|tail	phage tail tape measure protein	tail	A0A161H7H8	Salmonella_phage	29.4	3.7e-72
WP_071843562.1|4626222_4626483_-	hypothetical protein	NA	A0A0S2SY90	Pseudomonas_phage	54.3	4.3e-14
WP_042569846.1|4626530_4626842_-	hypothetical protein	NA	I6PDG2	Cronobacter_phage	60.2	2.7e-31
WP_042569847.1|4626854_4627775_-|tail	phage tail protein	tail	I6PBN6	Cronobacter_phage	49.7	4.3e-64
WP_042569848.1|4627840_4628248_-	DUF4128 domain-containing protein	NA	A0A1B0VMI0	Pseudomonas_phage	40.4	8.6e-17
WP_042569849.1|4628244_4628829_-	hypothetical protein	NA	G8C7Q1	Escherichia_phage	54.7	7.6e-51
WP_042569850.1|4628830_4629181_-	hypothetical protein	NA	I6PD77	Cronobacter_phage	56.0	7.6e-30
WP_042569851.1|4629182_4629434_-	hypothetical protein	NA	J9Q7U0	Salmonella_phage	54.8	1.3e-18
WP_042569852.1|4629435_4629918_-	hypothetical protein	NA	G8C7P9	Escherichia_phage	54.4	2.3e-45
WP_042569853.1|4629927_4630173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042569854.1|4630214_4631363_-|coat	coat protein	coat	G8C7P7	Escherichia_phage	71.2	8.0e-145
WP_042569855.1|4631376_4632132_-	hypothetical protein	NA	G8C7P6	Escherichia_phage	73.7	8.3e-98
WP_042569856.1|4632293_4633406_-	hypothetical protein	NA	I6PD76	Cronobacter_phage	58.5	4.6e-121
WP_042569857.1|4633406_4634795_-	DUF4055 domain-containing protein	NA	G8C7P4	Escherichia_phage	73.1	7.3e-193
WP_042569858.1|4634798_4636286_-|terminase	terminase	terminase	A0A1W6JNY3	Morganella_phage	77.0	6.8e-229
WP_042569859.1|4636295_4636745_-	DUF2280 domain-containing protein	NA	I6S1P9	Salmonella_phage	73.6	2.3e-47
WP_144405138.1|4636778_4637414_-	hypothetical protein	NA	I6S676	Salmonella_phage	71.4	1.2e-86
WP_042569860.1|4637597_4637834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155296413.1|4637976_4638150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042569861.1|4638152_4638842_-	hypothetical protein	NA	Q5G8R0	Enterobacteria_phage	86.0	9.5e-109
WP_042570177.1|4639160_4639346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042569862.1|4639685_4640075_-	hypothetical protein	NA	B6SD18	Bacteriophage	29.4	1.9e-05
WP_042569863.1|4640071_4640515_-	lysozyme	NA	R9TMH8	Aeromonas_phage	57.3	1.2e-40
WP_042570178.1|4640517_4640832_-|holin	holin	holin	NA	NA	NA	NA
WP_042569864.1|4641393_4642218_-	antitermination protein	NA	M9NZB0	Enterobacteria_phage	51.5	1.5e-71
WP_042569866.1|4642426_4642789_-	RusA family crossover junction endodeoxyribonuclease	NA	E5AGG1	Erwinia_phage	65.0	1.9e-36
WP_042569867.1|4642785_4643076_-	DUF1364 domain-containing protein	NA	A0A220NQY2	Salmonella_phage	74.7	2.8e-38
WP_042569868.1|4643335_4643650_-	DUF2591 family protein	NA	A0A2P1MXA7	Escherichia_phage	58.5	8.6e-25
WP_042569869.1|4643736_4644186_-	DUF1367 family protein	NA	A0A096XEN2	Escherichia_phage	63.8	4.3e-54
WP_042569870.1|4644284_4644692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042569871.1|4644870_4645131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_042569872.1|4645130_4645442_-	hypothetical protein	NA	E5AGF1	Erwinia_phage	70.2	7.7e-34
WP_042569873.1|4645454_4646792_-	AAA family ATPase	NA	A0A2I7REC3	Vibrio_phage	38.3	9.5e-81
WP_042569874.1|4646793_4647651_-	replication protein	NA	Q76H52	Enterobacteria_phage	43.3	7.8e-44
WP_042569875.1|4647822_4648110_-	hypothetical protein	NA	I6RSP4	Salmonella_phage	62.5	6.7e-24
WP_042569876.1|4648219_4648447_-	transcriptional regulator	NA	G9L677	Escherichia_phage	78.7	3.5e-28
WP_050107922.1|4648526_4649210_+	helix-turn-helix domain-containing protein	NA	A5VW98	Enterobacteria_phage	55.1	2.4e-56
WP_042569877.1|4649495_4650635_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_042569878.1|4650631_4651141_+	DUF4411 family protein	NA	NA	NA	NA	NA
WP_052491298.1|4651603_4651951_+	hypothetical protein	NA	A0A0K2FII1	Escherichia_phage	36.7	9.0e-07
>prophage 7
NZ_CP009801	Yersinia intermedia strain Y228 chromosome, complete genome	4859749	4656188	4666976	4859749	integrase	Proteus_phage(28.57%)	17	4657712:4657725	4669203:4669216
WP_052491299.1|4656188_4656704_+	3'-5' exoribonuclease	NA	A0A1P8DTS7	Salmonella_phage	59.2	3.0e-51
WP_144405140.1|4657297_4657540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052491301.1|4657570_4658353_+	hypothetical protein	NA	NA	NA	NA	NA
4657712:4657725	attL	CCTGATAATCGTTC	NA	NA	NA	NA
WP_042569886.1|4658339_4658561_+	DUF2158 domain-containing protein	NA	NA	NA	NA	NA
WP_042569888.1|4658783_4659026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042569889.1|4659150_4659357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042569890.1|4659364_4659583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042569891.1|4659579_4660215_+	DNA methyltransferase	NA	I6PDF5	Cronobacter_phage	74.0	2.9e-88
WP_080774774.1|4660321_4660624_+	hypothetical protein	NA	A0A0A7NV51	Enterobacteria_phage	57.1	6.6e-06
WP_042569892.1|4660624_4660855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080774725.1|4660866_4661091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071843566.1|4661121_4661364_+	hypothetical protein	NA	A0A1P8DTG1	Proteus_phage	54.5	4.8e-15
WP_042570186.1|4661333_4662527_-|integrase	site-specific integrase	integrase	A0A1P8DTG6	Proteus_phage	61.8	1.6e-140
WP_032905797.1|4663121_4663334_+	KTSC domain-containing protein	NA	A0A0K1LMB5	Caulobacter_phage	43.5	3.4e-09
WP_005182848.1|4663445_4664159_-	DUF554 domain-containing protein	NA	NA	NA	NA	NA
WP_005182850.1|4664302_4665109_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005182852.1|4665449_4666976_+	sugar ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.0	4.8e-12
4669203:4669216	attR	GAACGATTATCAGG	NA	NA	NA	NA
