assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000833375.1_ASM83337v1	NZ_CP009633	Francisella tularensis subsp. novicida U112 chromosome, complete genome	1	658803-659424	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas12a,cas4,cas1,cas2,csa3	DEDDh,cas12a,cas4,cas1,cas2,csa3,cas9,RT,cas3	Type V-A,Type I-A	GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT,GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT,GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT	36,36,36	0	0	NA	NA	V-A:V-A:V-A	9,9,5	9	TypeV-A,TypeI-A	DEDDh,cas12a,cas4,cas1,cas2,csa3,cas9,RT,cas3	NA|239aa|up_5|NZ_CP009633.1_651513_652230_+,NA|171aa|down_7|NZ_CP009633.1_664884_665397_-,NA|134aa|down_8|NZ_CP009633.1_665413_665815_-	NA|315aa|up_9|NZ_CP009633.1_648087_649032_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|297aa|up_8|NZ_CP009633.1_649222_650113_+	PRK01231, ppnK, NAD(+) kinase	NA|212aa|up_7|NZ_CP009633.1_650109_650745_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|230aa|up_6|NZ_CP009633.1_650814_651504_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|239aa|up_5|NZ_CP009633.1_651513_652230_+	NA	NA|172aa|up_4|NZ_CP009633.1_652234_652750_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	cas12a|1301aa|up_3|NZ_CP009633.1_652837_656740_+	TIGR04330, conserved_hypothetical_protein, CRISPR-associated protein Cpf1, subtype PREFRAN	cas4|179aa|up_2|NZ_CP009633.1_656865_657402_+	TIGR04328, hypothetical_protein_HMPREF9709_01098, CRISPR-associated protein Cas4, subtype PREFRAN	cas1|335aa|up_1|NZ_CP009633.1_657405_658410_+	TIGR04329, hypothetical_protein_SbacW_07302_partial, CRISPR-associated endonuclease Cas1, subtype PREFRAN	cas2|91aa|up_0|NZ_CP009633.1_658390_658663_+	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	csa3|101aa|down_0|NZ_CP009633.1_659483_659786_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|173aa|down_1|NZ_CP009633.1_659847_660366_+	COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]	NA|564aa|down_2|NZ_CP009633.1_660390_662082_+	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	NA|229aa|down_3|NZ_CP009633.1_662126_662813_+	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain	NA|250aa|down_4|NZ_CP009633.1_662814_663564_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|203aa|down_5|NZ_CP009633.1_663556_664165_-	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily	NA|149aa|down_6|NZ_CP009633.1_664216_664663_-	PRK05170, PRK05170, YcgN family cysteine cluster protein	NA|171aa|down_7|NZ_CP009633.1_664884_665397_-	NA	NA|134aa|down_8|NZ_CP009633.1_665413_665815_-	NA	NA|142aa|down_9|NZ_CP009633.1_666001_666427_+	TIGR01951, nusB, transcription antitermination factor NusB
GCF_000833375.1_ASM83337v1	NZ_CP009633	Francisella tularensis subsp. novicida U112 chromosome, complete genome	2	909569-909732	2	CRISPRCasFinder	no		DEDDh,cas12a,cas4,cas1,cas2,csa3,cas9,RT,cas3	Orphan	ACCCGTTTTATGATAGATTTAAATAATGGATATAATGGCAACCACAAGGGAT	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas12a,cas4,cas1,cas2,csa3,cas9,RT,cas3	NA|518aa|up_2|NZ_CP009633.1_903526_905080_+,NA|233aa|down_0|NZ_CP009633.1_909955_910654_+,NA|139aa|down_9|NZ_CP009633.1_919632_920049_+	NA|144aa|up_9|NZ_CP009633.1_895506_895938_+	cd07813, COQ10p_like, Coenzyme Q-binding protein COQ10p and similar proteins	NA|102aa|up_8|NZ_CP009633.1_895937_896243_+	pfam03658, Ub-RnfH, RnfH family Ubiquitin	NA|401aa|up_7|NZ_CP009633.1_896284_897487_+	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA|307aa|up_6|NZ_CP009633.1_897563_898484_+	pfam04333, MlaA, MlaA lipoprotein	NA|582aa|up_5|NZ_CP009633.1_898599_900345_+	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|252aa|up_4|NZ_CP009633.1_900360_901116_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|606aa|up_3|NZ_CP009633.1_901287_903105_-	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|518aa|up_2|NZ_CP009633.1_903526_905080_+	NA	NA|783aa|up_1|NZ_CP009633.1_905212_907561_+	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|408aa|up_0|NZ_CP009633.1_908165_909389_+	cd17289, RMtype1_S_BamJRS5ORF1993P-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Bacillus amyloliquefaciens JRS5 S subunit (S	NA|233aa|down_0|NZ_CP009633.1_909955_910654_+	NA	NA|483aa|down_1|NZ_CP009633.1_910634_912083_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|583aa|down_2|NZ_CP009633.1_912072_913821_-	sd00010, SLR, Sel1-like repeat	NA|291aa|down_3|NZ_CP009633.1_913887_914760_-	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF	NA|378aa|down_4|NZ_CP009633.1_914822_915956_+	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|213aa|down_5|NZ_CP009633.1_915959_916598_+	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|269aa|down_6|NZ_CP009633.1_916601_917408_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|398aa|down_7|NZ_CP009633.1_917417_918611_+	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|298aa|down_8|NZ_CP009633.1_918724_919618_+	PRK00089, era, GTPase Era; Reviewed	NA|139aa|down_9|NZ_CP009633.1_919632_920049_+	NA
GCF_000833375.1_ASM83337v1	NZ_CP009633	Francisella tularensis subsp. novicida U112 chromosome, complete genome	3	943046-943140	3	CRISPRCasFinder	no		DEDDh,cas12a,cas4,cas1,cas2,csa3,cas9,RT,cas3	Orphan	CCAGTATCACTTAAGGCATCTTTAGTTTT	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas12a,cas4,cas1,cas2,csa3,cas9,RT,cas3	NA|82aa|up_1|NZ_CP009633.1_942277_942523_-,NA|84aa|down_2|NZ_CP009633.1_946595_946847_+,NA|112aa|down_3|NZ_CP009633.1_946863_947199_+	NA|96aa|up_9|NZ_CP009633.1_931400_931688_+	pfam03937, Sdh5, Flavinator of succinate dehydrogenase	NA|1355aa|up_8|NZ_CP009633.1_931704_935769_+	PRK11905, PRK11905, bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|503aa|up_7|NZ_CP009633.1_935929_937438_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|395aa|up_6|NZ_CP009633.1_937513_938698_+	TIGR00895, transport_protein, benzoate transport	NA|392aa|up_5|NZ_CP009633.1_938710_939886_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|332aa|up_4|NZ_CP009633.1_939882_940878_+	cd09019, galactose_mutarotase_like, galactose mutarotase_like	NA|77aa|up_3|NZ_CP009633.1_940987_941218_-	COG4572, ChaB, Putative cation transport regulator [General function prediction only]	NA|288aa|up_2|NZ_CP009633.1_941229_942093_-	cd05355, SDR_c1, classical (c) SDR, subgroup 1	NA|82aa|up_1|NZ_CP009633.1_942277_942523_-	NA	NA|102aa|up_0|NZ_CP009633.1_942588_942894_-	pfam05239, PRC, PRC-barrel domain	NA|465aa|down_0|NZ_CP009633.1_944072_945467_-	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]	NA|334aa|down_1|NZ_CP009633.1_945451_946453_-	pfam00762, Ferrochelatase, Ferrochelatase	NA|84aa|down_2|NZ_CP009633.1_946595_946847_+	NA	NA|112aa|down_3|NZ_CP009633.1_946863_947199_+	NA	NA|389aa|down_4|NZ_CP009633.1_947216_948383_+	COG4637, COG4637, Predicted ATPase [General function prediction only]	NA|410aa|down_5|NZ_CP009633.1_948456_949686_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|593aa|down_6|NZ_CP009633.1_949700_951479_-	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB	NA|251aa|down_7|NZ_CP009633.1_951636_952389_+	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins	NA|248aa|down_8|NZ_CP009633.1_952377_953121_-	cd00885, cinA, Competence-damaged protein	NA|941aa|down_9|NZ_CP009633.1_953244_956067_+	PRK14016, PRK14016, cyanophycin synthetase; Provisional
GCF_000833375.1_ASM83337v1	NZ_CP009633	Francisella tularensis subsp. novicida U112 chromosome, complete genome	4	1311740-1312921	2,2,4	CRT,PILER-CR,CRISPRCasFinder	no	cas4,cas2,cas1,cas9	DEDDh,cas12a,cas4,cas1,cas2,csa3,cas9,RT,cas3	Type II-A,Type II-C,Type II-B	NNNNNNNNNGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG,GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG,GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	46,37,37	0	0	NA	NA	NA:NA:NA	16,13,13	16	TypeII-A,TypeII-C,TypeII-B	DEDDh,cas12a,cas4,cas1,cas2,csa3,cas9,RT,cas3	NA|118aa|up_3|NZ_CP009633.1_1309102_1309456_+,NA	NA|401aa|up_9|NZ_CP009633.1_1302377_1303580_+	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|285aa|up_8|NZ_CP009633.1_1303576_1304431_-	PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional	NA|159aa|up_7|NZ_CP009633.1_1304559_1305036_+	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|651aa|up_6|NZ_CP009633.1_1305028_1306981_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|251aa|up_5|NZ_CP009633.1_1307122_1307875_+	cd18095, SpoU-like_rRNA-MTase, SAM-dependent rRNA methylase related to SpoU-TrmH	NA|323aa|up_4|NZ_CP009633.1_1307969_1308938_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|118aa|up_3|NZ_CP009633.1_1309102_1309456_+	NA	NA|150aa|up_2|NZ_CP009633.1_1309468_1309918_-	COG0824, FcbC, Predicted thioesterase [General function prediction only]	NA|83aa|up_1|NZ_CP009633.1_1309914_1310163_-	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain	NA|362aa|up_0|NZ_CP009633.1_1310155_1311241_-	TIGR04545, rSAM_ahbD_hemeb, heme b synthase	cas4|195aa|down_0|NZ_CP009633.1_1313280_1313865_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas2|98aa|down_1|NZ_CP009633.1_1313851_1314145_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|319aa|down_2|NZ_CP009633.1_1314302_1315259_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas9|1630aa|down_3|NZ_CP009633.1_1315239_1320129_-	cd09704, Csx12, CRISPR/Cas system-associated protein Cas9	NA|393aa|down_4|NZ_CP009633.1_1320800_1321979_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|82aa|down_5|NZ_CP009633.1_1322088_1322334_-	PRK07118, PRK07118, Fe-S cluster domain-containing protein	NA|163aa|down_6|NZ_CP009633.1_1322338_1322827_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|184aa|down_7|NZ_CP009633.1_1322838_1323390_-	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT	NA|119aa|down_8|NZ_CP009633.1_1323403_1323760_-	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]	NA|408aa|down_9|NZ_CP009633.1_1323780_1325004_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
