The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009440	Francisella philomiragia strain GA01-2794 chromosome, complete genome	2148038	78887	89778	2148038	tRNA	Staphylococcus_phage(25.0%)	10	NA	NA
WP_044525395.1|78887_80672_+	elongation factor 4	NA	A0A2K9L6L3	Tupanvirus	43.2	4.2e-23
WP_044525396.1|80787_81867_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_044525397.1|81886_82831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044525398.1|82926_83445_-	peptide deformylase	NA	A0A067XQZ3	Caulobacter_phage	38.6	1.7e-17
WP_044525399.1|83448_83892_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	43.6	5.5e-25
WP_044525400.1|83895_85107_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	44.3	1.1e-86
WP_044525401.1|85099_85705_-	riboflavin synthase	NA	A0A1V0SE20	Indivirus	36.8	9.4e-20
WP_044525402.1|85697_86768_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	36.8	2.0e-49
WP_044525403.1|87140_88409_+	sodium:proton antiporter	NA	A0A2H4J178	uncultured_Caudovirales_phage	34.3	2.8e-29
WP_044527081.1|88527_89778_+	sodium:proton antiporter	NA	A0A2H4J178	uncultured_Caudovirales_phage	32.2	3.9e-28
>prophage 2
NZ_CP009440	Francisella philomiragia strain GA01-2794 chromosome, complete genome	2148038	1212858	1286376	2148038	portal,tRNA,terminase,integrase,plate,capsid,tail	Pseudomonas_phage(16.67%)	85	1282561:1282576	1286480:1286495
WP_044526314.1|1212858_1213833_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_044526315.1|1213822_1214665_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA	NA
WP_044526316.1|1214781_1215288_-	DUF2062 domain-containing protein	NA	NA	NA	NA	NA
WP_044526317.1|1215403_1215658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526318.1|1215797_1216784_+	ferrochelatase	NA	NA	NA	NA	NA
WP_044526319.1|1216799_1217699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044526320.1|1217682_1219095_+	deoxyribodipyrimidine photo-lyase	NA	A0A1V0SGL1	Hokovirus	35.6	1.5e-63
WP_044526321.1|1219178_1220453_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	57.0	2.9e-127
WP_044526322.1|1220473_1221472_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_044526323.1|1221452_1222628_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	NA	NA	NA	NA
WP_044526324.1|1222638_1223823_-	MFS transporter	NA	NA	NA	NA	NA
WP_044526325.1|1223897_1225406_-	APC family permease	NA	NA	NA	NA	NA
WP_044526326.1|1225559_1229624_-	bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA	NA	NA	NA	NA
WP_044526327.1|1229641_1229929_-	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA	NA
WP_044526328.1|1230145_1230529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044526329.1|1230582_1230807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526330.1|1230860_1231946_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_044526331.1|1231942_1232473_-	shikimate kinase AroK	NA	NA	NA	NA	NA
WP_044526332.1|1232598_1234359_-	type IV pilus secretin PilQ family protein	NA	NA	NA	NA	NA
WP_044526333.1|1234368_1234959_-	pilus assembly protein PilP	NA	NA	NA	NA	NA
WP_044526334.1|1234964_1235564_-	type 4a pilus biogenesis protein PilO	NA	NA	NA	NA	NA
WP_044526335.1|1235557_1236121_-	type IV pili associated protein	NA	NA	NA	NA	NA
WP_044526336.1|1236124_1237129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526337.1|1237258_1237909_+	adenylate kinase	NA	NA	NA	NA	NA
WP_044526338.1|1237912_1240636_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_044526339.1|1240697_1241114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044527136.1|1241125_1242019_-	GTPase Era	NA	NA	NA	NA	NA
WP_044526340.1|1242139_1243330_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_044526341.1|1243339_1244146_-	class II glutamine amidotransferase	NA	NA	NA	NA	NA
WP_044526342.1|1244150_1244789_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_044526343.1|1244792_1245926_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_044526344.1|1245988_1246867_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_044526345.1|1246925_1248665_+	SEL1-like repeat protein	NA	NA	NA	NA	NA
WP_042518133.1|1248668_1249262_-	thymidine kinase	NA	E3SFJ8	Shigella_phage	45.5	1.7e-42
WP_044526346.1|1249274_1249910_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_044526347.1|1250095_1251424_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_044526348.1|1251427_1252402_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	44.0	2.6e-43
WP_044526349.1|1252491_1253442_-	hypothetical protein	NA	D5LGY1	Escherichia_phage	26.6	4.0e-25
WP_044526350.1|1253432_1253648_-|tail	tail protein X	tail	NA	NA	NA	NA
WP_044526351.1|1253637_1253994_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_044526352.1|1253990_1256297_-|tail	phage tail tape measure protein	tail	B9A7B3	Serratia_phage	26.8	7.0e-39
WP_149031943.1|1256382_1256688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526354.1|1256716_1257232_-|tail	phage major tail tube protein	tail	D4HTW2	Vibrio_phage	27.5	7.8e-07
WP_044526355.1|1257233_1258394_-|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A1B2LRR3	Wolbachia_phage	44.2	9.1e-88
WP_149031944.1|1258410_1258869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526357.1|1258876_1259632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050022781.1|1259624_1260317_-	hypothetical protein	NA	A0A0U4JEJ6	Pseudomonas_phage	30.4	7.3e-08
WP_050022782.1|1260326_1261304_-|tail	tail fiber protein	tail	R4JJY3	Burkholderia_phage	34.1	1.7e-23
WP_050022783.1|1261303_1261912_-|tail	phage tail protein I	tail	Q19UQ4	Mannheimia_phage	28.8	2.5e-12
WP_044526358.1|1261904_1262717_-|plate	baseplate J/gp47 family protein	plate	R9TML5	Vibrio_phage	24.1	5.7e-12
WP_044526359.1|1262709_1263048_-	GPW/gp25 family protein	NA	NA	NA	NA	NA
WP_044526360.1|1263047_1263746_-|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_044526361.1|1263750_1264161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526362.1|1264150_1264660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526363.1|1264652_1264970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526364.1|1264976_1266770_-|capsid	phage major capsid protein	capsid	K7XS73	uncultured_Mediterranean_phage	27.2	1.2e-54
WP_044526365.1|1266753_1268166_-|portal	phage portal protein	portal	A0A193GYC1	Enterobacter_phage	28.7	1.4e-42
WP_044526366.1|1268165_1268408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526367.1|1268498_1270262_-|terminase	phage terminase large subunit family protein	terminase	V5YTA4	Pseudomonas_phage	36.5	1.1e-103
WP_044526368.1|1270242_1270434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526369.1|1270436_1270688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526370.1|1270674_1271043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526371.1|1271167_1271725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526372.1|1271717_1273013_-	ParB N-terminal domain-containing protein	NA	K4HZA5	Acidithiobacillus_phage	41.7	1.5e-83
WP_044526373.1|1273094_1273436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526374.1|1273451_1273883_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_162483966.1|1273879_1274038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526375.1|1273998_1274628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526376.1|1274640_1275468_-	helix-turn-helix domain-containing protein	NA	A0A0R6PHP4	Moraxella_phage	40.0	4.8e-06
WP_044526377.1|1275469_1276330_-	recombination-associated protein RdgC	NA	NA	NA	NA	NA
WP_044526378.1|1276326_1276617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526379.1|1276613_1276838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526380.1|1276834_1277113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149031945.1|1277183_1277423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044526382.1|1277630_1277858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526383.1|1278031_1278592_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_044526384.1|1278627_1279671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044526385.1|1279636_1280248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044526386.1|1280360_1281116_+	VUT family protein	NA	NA	NA	NA	NA
WP_044526387.1|1281132_1281483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_044526388.1|1281499_1282522_+	hypothetical protein	NA	NA	NA	NA	NA
1282561:1282576	attL	TTCTTATCTAAAAACT	NA	NA	NA	NA
WP_044526389.1|1282615_1283011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526390.1|1282997_1284821_-	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_044526391.1|1284835_1285150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_044526392.1|1285245_1286376_-|integrase	site-specific integrase	integrase	F1C5B2	Cronobacter_phage	29.7	4.8e-17
1286480:1286495	attR	AGTTTTTAGATAAGAA	NA	NA	NA	NA
>prophage 3
NZ_CP009440	Francisella philomiragia strain GA01-2794 chromosome, complete genome	2148038	1683183	1690521	2148038		Escherichia_phage(28.57%)	7	NA	NA
WP_044526719.1|1683183_1684185_-	dTDP-glucose 4,6-dehydratase	NA	K7QJG5	Escherichia_phage	48.8	1.9e-81
WP_044526720.1|1684423_1685302_-	dTDP-4-dehydrorhamnose reductase	NA	A0A1D8EQE2	Escherichia_phage	39.0	6.8e-43
WP_044526721.1|1685332_1685905_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	48.6	7.3e-38
WP_044526722.1|1685901_1686792_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	61.0	3.2e-101
WP_044526723.1|1686916_1687966_-	GDP-L-fucose synthase	NA	M4R1H4	Synechococcus_phage	51.0	1.4e-90
WP_044526724.1|1687979_1689119_-	GDP-mannose 4,6-dehydratase	NA	M1HAR7	Acanthocystis_turfacea_Chlorella_virus	59.4	7.3e-122
WP_044526725.1|1689147_1690521_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	30.6	8.6e-53
