The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009720	Bacillus thuringiensis strain HD682 chromosome, complete genome	5213295	1214719	1275242	5213295	protease,portal,capsid,head,integrase,terminase,tRNA,tail	Bacillus_phage(43.18%)	68	1221178:1221193	1251903:1251918
WP_000504940.1|1214719_1215673_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_000813896.1|1215694_1215919_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_042510921.1|1215998_1219550_-	Gly-Xaa-Xaa repeat protein	NA	NA	NA	NA	NA
WP_000450309.1|1219663_1220629_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_042510922.1|1220742_1221699_+	stage V sporulation protein K	NA	G3MAX6	Bacillus_virus	44.0	3.5e-53
1221178:1221193	attL	GATTTAATAAAAAAAG	NA	NA	NA	NA
WP_000312272.1|1221968_1222592_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_000391400.1|1222684_1223959_+	GTPase HflX	NA	NA	NA	NA	NA
WP_000460319.1|1223951_1225223_+	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_000656783.1|1225398_1225788_+	transcriptional repressor GlnR	NA	NA	NA	NA	NA
WP_000135328.1|1225836_1227171_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_000135915.1|1227285_1228431_-|integrase	site-specific integrase	integrase	A0A0M5M609	Bacillus_phage	38.0	7.4e-66
WP_000673782.1|1228655_1229084_-	ImmA/IrrE family metallo-endopeptidase	NA	Q9T201	Bacillus_phage	55.1	2.8e-34
WP_000060654.1|1229106_1229520_-	helix-turn-helix transcriptional regulator	NA	A0A0M4QX29	Bacillus_phage	47.1	5.1e-25
WP_000877760.1|1229795_1229996_+	helix-turn-helix transcriptional regulator	NA	A0A0C5AJQ3	Paenibacillus_phage	52.6	1.4e-09
WP_000572505.1|1229992_1230721_+	Rha family transcriptional regulator	NA	A0A288WFT2	Bacillus_phage	48.6	3.1e-49
WP_042510925.1|1230829_1231096_+	group-specific protein	NA	S5MC08	Brevibacillus_phage	55.8	1.5e-25
WP_000510717.1|1231246_1231564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000897921.1|1231535_1231799_+	hypothetical protein	NA	A0A0M5M3T1	Bacillus_phage	61.1	2.9e-10
WP_042510926.1|1231813_1232296_+	siphovirus Gp157 family protein	NA	E5DV79	Deep-sea_thermophilic_phage	48.8	6.3e-35
WP_042510927.1|1232292_1232964_+	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	45.5	1.4e-27
WP_000849734.1|1232977_1233250_+	hypothetical protein	NA	A0A0M4S680	Bacillus_phage	82.0	2.9e-37
WP_000067428.1|1233246_1234005_+	hypothetical protein	NA	A0A1W6JNI1	Staphylococcus_phage	54.9	3.6e-61
WP_042510928.1|1233940_1234771_+	ATP-binding protein	NA	U5PWH5	Bacillus_phage	38.4	1.3e-35
WP_042510930.1|1234955_1235585_+	hypothetical protein	NA	A0A0M4RU33	Bacillus_phage	40.9	3.7e-27
WP_000553935.1|1235587_1235710_+	Fur-regulated basic protein FbpA	NA	NA	NA	NA	NA
WP_042510931.1|1235804_1236377_+	dUTPase	NA	A0A0A7AQI4	Bacillus_phage	73.8	7.7e-80
WP_042510932.1|1236427_1236901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080773562.1|1237275_1237539_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144405033.1|1237975_1238722_+	FAD-dependent thymidylate synthase	NA	A0A2P1JUN2	Bacillus_phage	61.7	8.5e-79
WP_042510933.1|1238825_1239038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000520472.1|1239174_1239462_+	hypothetical protein	NA	A6M999	Geobacillus_virus	71.3	1.9e-34
WP_042510934.1|1239466_1239841_+	DUF1492 domain-containing protein	NA	A0A0M4R397	Bacillus_phage	69.4	7.1e-42
WP_042510936.1|1240314_1240566_+	helix-turn-helix domain-containing protein	NA	A0A2H4JDR0	uncultured_Caudovirales_phage	51.9	2.2e-15
WP_042510937.1|1240632_1240857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052495361.1|1240997_1242359_+	DUF4935 domain-containing protein	NA	NA	NA	NA	NA
WP_042510938.1|1242914_1243418_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1L2JY33	Aeribacillus_phage	66.5	3.6e-57
WP_042510939.1|1243615_1245565_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_042510940.1|1245551_1246742_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042510941.1|1246790_1247435_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_042510942.1|1247575_1247908_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_042510943.1|1247940_1248924_+	HNH endonuclease	NA	NA	NA	NA	NA
WP_042510945.1|1249527_1249806_+	helix-turn-helix domain-containing protein	NA	A0A2H4JBQ8	uncultured_Caudovirales_phage	43.2	1.5e-09
WP_042510946.1|1249926_1250352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042510947.1|1250438_1250861_-	pilus assembly protein HicB	NA	A0A1L2JY34	Aeribacillus_phage	58.3	3.4e-40
WP_001051273.1|1251626_1251923_+	HNH endonuclease	NA	R9TNN2	Paenibacillus_phage	60.4	7.8e-28
1251903:1251918	attR	GATTTAATAAAAAAAG	NA	NA	NA	NA
WP_042510948.1|1252089_1252461_+	hypothetical protein	NA	A0A2H4J5M7	uncultured_Caudovirales_phage	41.8	3.3e-15
WP_042510949.1|1252457_1254146_+|terminase	terminase large subunit	terminase	A0A290GJW3	Caldibacillus_phage	73.4	2.6e-253
WP_042510950.1|1254161_1255373_+|portal	phage portal protein	portal	J9QE83	Clostridium_phage	59.9	2.6e-138
WP_001043897.1|1255338_1255923_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2I7SBY1	Paenibacillus_phage	50.5	1.0e-39
WP_000854837.1|1255936_1257100_+|capsid	phage major capsid protein	capsid	H7BUQ0	unidentified_phage	54.7	3.2e-80
WP_042510951.1|1257136_1257427_+	hypothetical protein	NA	A6XMJ7	Bacillus_virus	37.0	4.8e-06
WP_042510952.1|1257429_1257702_+	DNA-packaging protein	NA	R9TMB7	Paenibacillus_phage	58.4	1.5e-20
WP_000997895.1|1257698_1257998_+|head	phage head closure protein	head	R9TPZ2	Paenibacillus_phage	38.3	1.7e-09
WP_042510953.1|1257990_1258347_+	HK97 gp10 family phage protein	NA	D2XR21	Bacillus_phage	60.3	5.3e-31
WP_000172073.1|1258343_1258673_+	hypothetical protein	NA	A0A2H4JAG4	uncultured_Caudovirales_phage	83.5	2.2e-47
WP_001293690.1|1258673_1259267_+|tail	phage tail protein	tail	A0A2H4JDV4	uncultured_Caudovirales_phage	84.1	5.3e-92
WP_000415946.1|1259271_1259634_+	hypothetical protein	NA	A0A2H4JAG8	uncultured_Caudovirales_phage	74.8	9.2e-47
WP_052495362.1|1261331_1263761_+	hypothetical protein	NA	D2XR26	Bacillus_phage	61.9	9.4e-10
WP_042510955.1|1263802_1265284_+|tail	phage tail protein	tail	A0A1B1P7W7	Bacillus_phage	79.5	2.9e-240
WP_042510956.1|1265280_1270158_+	hypothetical protein	NA	A0A2H4JF18	uncultured_Caudovirales_phage	46.1	9.0e-312
WP_000077308.1|1270175_1270451_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	A0A1B1P7E8	Bacillus_phage	78.8	6.8e-34
WP_000398741.1|1270561_1270798_+	hypothetical protein	NA	A0A2H4J382	uncultured_Caudovirales_phage	92.3	1.9e-16
WP_000461736.1|1270797_1271037_+	hypothetical protein	NA	A0A0A7AR38	Bacillus_phage	84.8	4.0e-30
WP_042510957.1|1271033_1272089_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1C8E990	Bacillus_phage	75.5	4.5e-158
WP_052495363.1|1272257_1273571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_158333830.1|1273548_1273707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042510958.1|1273879_1274479_-	hypothetical protein	NA	A6XML2	Bacillus_virus	48.6	3.9e-26
WP_042510959.1|1275029_1275242_+	transcriptional regulator	NA	A0A1Z1LZP5	Bacillus_phage	68.6	2.4e-18
>prophage 2
NZ_CP009720	Bacillus thuringiensis strain HD682 chromosome, complete genome	5213295	2942689	2951416	5213295		Bacillus_phage(71.43%)	9	NA	NA
WP_042511451.1|2942689_2943562_-	aminoglycoside 6-adenylyltransferase	NA	A0A1X9I6F2	Streptococcus_phage	46.2	3.9e-67
WP_002036196.1|2943702_2943816_-	hypothetical protein	NA	W8CYT3	Bacillus_phage	91.7	2.1e-05
WP_000818985.1|2943932_2944652_-	3-ketoacyl-ACP reductase	NA	W8CYX9	Bacillus_phage	100.0	5.9e-61
WP_042511453.1|2944847_2945435_+	DUF3139 domain-containing protein	NA	NA	NA	NA	NA
WP_042511454.1|2945459_2946527_-	HAMP domain-containing sensor histidine kinase	NA	W8CYF6	Bacillus_phage	88.0	3.1e-167
WP_128294964.1|2946523_2947210_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	93.4	8.5e-118
WP_042511455.1|2947289_2949050_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	95.3	3.1e-265
WP_001194297.1|2949290_2950055_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000755546.1|2950153_2951416_-	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	32.0	6.8e-12
>prophage 3
NZ_CP009720	Bacillus thuringiensis strain HD682 chromosome, complete genome	5213295	4435101	4443478	5213295		Synechococcus_phage(33.33%)	8	NA	NA
WP_000088592.1|4435101_4435689_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.1	1.2e-27
WP_001262436.1|4435685_4436726_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	46.4	9.4e-68
WP_000879029.1|4436832_4438248_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.4	7.3e-55
WP_000055577.1|4438232_4440452_-	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	41.2	1.7e-162
WP_000666779.1|4440435_4441119_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000278820.1|4441115_4441370_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_001170542.1|4441362_4442082_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	44.3	5.2e-49
WP_000625683.1|4442170_4443478_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	25.3	6.4e-21
>prophage 4
NZ_CP009720	Bacillus thuringiensis strain HD682 chromosome, complete genome	5213295	4488488	4496438	5213295		Bacillus_phage(33.33%)	6	NA	NA
WP_000719243.1|4488488_4489994_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	30.8	9.2e-32
WP_000929888.1|4489977_4490679_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.9	7.3e-40
WP_042511771.1|4490824_4492150_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	29.2	2.1e-43
WP_000743900.1|4492534_4494073_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	31.2	2.6e-21
WP_001029999.1|4494480_4496115_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	58.2	2.0e-157
WP_000917306.1|4496153_4496438_-	co-chaperone GroES	NA	A0A221S3C8	uncultured_virus	53.8	1.2e-20
>prophage 1
NZ_CP009718	Bacillus thuringiensis strain HD682 plasmid pBGN_2, complete sequence	56203	14489	28692	56203		Bacillus_phage(60.0%)	19	NA	NA
WP_042510704.1|14489_15080_-	DUF4352 domain-containing protein	NA	A0A1B1P898	Bacillus_phage	98.4	8.2e-61
WP_042510705.1|15268_16057_+	exosporium leader peptide-containing protein	NA	NA	NA	NA	NA
WP_042510706.1|16197_16545_-	helix-turn-helix transcriptional regulator	NA	A0A1B1P888	Bacillus_phage	45.4	2.4e-20
WP_042510707.1|17035_18211_+	hypothetical protein	NA	A0A1B1P895	Bacillus_phage	47.2	6.0e-103
WP_042510708.1|18674_19031_-	helix-turn-helix transcriptional regulator	NA	A0A288WFW4	Bacillus_phage	42.3	2.8e-16
WP_000693792.1|19223_19418_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_042510709.1|19504_20275_+	antirepressor	NA	A0A075KK42	Lactobacillus_phage	39.9	2.9e-42
WP_042510710.1|21127_21610_+	siphovirus Gp157 family protein	NA	E5DV79	Deep-sea_thermophilic_phage	51.9	9.4e-39
WP_042510711.1|21606_22302_+	hypothetical protein	NA	A0A2H4J7J4	uncultured_Caudovirales_phage	50.4	1.4e-38
WP_052495356.1|22315_22966_+	hypothetical protein	NA	A0A0C5K996	Enterococcus_phage	41.1	2.4e-37
WP_042510712.1|22955_23138_+	hypothetical protein	NA	A0A1B1P897	Bacillus_phage	63.6	7.2e-16
WP_042510714.1|23359_24217_+	replication protein	NA	A0A1W6JP67	Staphylococcus_phage	44.5	7.1e-37
WP_042510715.1|24140_24959_+	ATP-binding protein	NA	A0A1B0T6C3	Bacillus_phage	63.3	1.1e-87
WP_042510716.1|24962_25226_+	hypothetical protein	NA	A0A1B1P8D7	Bacillus_phage	79.3	3.7e-21
WP_052495357.1|25182_25428_+	hypothetical protein	NA	A0A1B1P7W1	Bacillus_phage	87.2	6.9e-30
WP_042510718.1|25424_25688_+	hypothetical protein	NA	A0A0S2GLK4	Bacillus_phage	61.4	5.2e-23
WP_042510719.1|25848_26208_-	cell division protein DivIVC	NA	NA	NA	NA	NA
WP_042510720.1|27073_27358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042510722.1|28062_28692_+	Holliday junction resolvase RecU	NA	A0A2H4J3A4	uncultured_Caudovirales_phage	62.0	2.0e-49
>prophage 2
NZ_CP009718	Bacillus thuringiensis strain HD682 plasmid pBGN_2, complete sequence	56203	33208	55389	56203	tail,capsid,plate,portal	Bacillus_phage(52.94%)	26	NA	NA
WP_042510728.1|33208_34009_+	hypothetical protein	NA	D2XPX8	Bacillus_virus	64.3	5.4e-55
WP_080773542.1|34535_35186_+	hypothetical protein	NA	A0A2R4P8H7	Staphylococcus_phage	41.0	1.4e-45
WP_042510731.1|36277_37816_+|portal	phage portal protein	portal	A0A1B1P7C8	Bacillus_phage	39.4	3.0e-94
WP_042510732.1|37802_38729_+	hypothetical protein	NA	A0A1B1P7D7	Bacillus_phage	36.7	4.3e-48
WP_042510733.1|38775_39786_+	hypothetical protein	NA	A0A1B1IMM2	Lactococcus_phage	42.4	9.2e-52
WP_042510734.1|39807_40737_+|capsid	phage major capsid protein	capsid	A0A1B1P7E3	Bacillus_phage	72.0	2.5e-120
WP_071713421.1|40743_40911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042510735.1|40916_41306_+	DUF3199 family protein	NA	A0A1B1P7D6	Bacillus_phage	39.2	2.7e-20
WP_042510736.1|41305_41698_+	DUF3599 family protein	NA	NA	NA	NA	NA
WP_042510737.1|41682_42174_+	HK97 gp10 family phage protein	NA	A0A249XXA4	Clostridium_phage	50.3	1.1e-39
WP_042510738.1|42176_42578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000852367.1|42592_43057_+|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
WP_001210040.1|43122_43539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424144.1|43616_43877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_042510739.1|43892_46619_+|tail	tail length tape measure protein	tail	B5LPS3	Bacillus_virus	46.4	9.4e-75
WP_042510740.1|46618_47500_+|tail	phage tail family protein	tail	A0A2P1JTW0	Anoxybacillus_phage	46.9	2.8e-73
WP_042510741.1|47511_49359_+	hypothetical protein	NA	A0A2P1JTV8	Anoxybacillus_phage	56.4	5.8e-129
WP_042510742.1|49368_49638_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_042510743.1|49653_51291_+|plate	BppU family phage baseplate upper protein	plate	B5LPS6	Bacillus_virus	42.8	6.0e-85
WP_042510744.1|51303_51975_+	hypothetical protein	NA	A0A1B1P805	Bacillus_phage	63.9	7.7e-55
WP_042510745.1|52110_52503_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001156199.1|52554_52788_+	XpaF1 protein	NA	A0A1B1P887	Bacillus_phage	94.8	3.3e-29
WP_042510746.1|52789_52996_+	hypothetical protein	NA	D2XR32	Bacillus_phage	93.9	7.6e-30
WP_042510747.1|52995_53757_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B1P7G0	Bacillus_phage	85.4	6.1e-125
WP_042510748.1|53785_54127_-	YolD-like family protein	NA	NA	NA	NA	NA
WP_042510749.1|54123_55389_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	48.3	6.6e-108
