assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000832485.1_ASM83248v1	NZ_CP009335	Bacillus thuringiensis strain HD1011 chromosome, complete genome	1	2350902-2351010	1	CRISPRCasFinder	no		csa3,cas3,c2c9_V-U4,DEDDh,WYL,cas14k,DinG,cas14j	Orphan	TGTATGATTACCTTCCGCATGAGAA	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,c2c9_V-U4,DEDDh,WYL,cas14k,DinG,cas14j,Cas14u_CAS-V	NA|124aa|up_3|NZ_CP009335.1_2347439_2347811_+,NA	NA|515aa|up_9|NZ_CP009335.1_2339972_2341517_+	PRK01642, cls, cardiolipin synthetase; Reviewed	NA|415aa|up_8|NZ_CP009335.1_2341598_2342843_+	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease    domain [General function prediction only]	NA|609aa|up_7|NZ_CP009335.1_2342893_2344720_+	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|298aa|up_6|NZ_CP009335.1_2345242_2346136_-	pfam13743, Thioredoxin_5, Thioredoxin	NA|133aa|up_5|NZ_CP009335.1_2346135_2346534_-	cd14772, TrHb2_Bs-trHb-like_O, Truncated hemoglobins, group 2 (O); Bacillus subtilis TrHb like	NA|193aa|up_4|NZ_CP009335.1_2346714_2347293_-	cd07762, CYTH-like_Pase_1, Uncharacterized subgroup 1 of the CYTH-like superfamily	NA|124aa|up_3|NZ_CP009335.1_2347439_2347811_+	NA	NA|213aa|up_2|NZ_CP009335.1_2347841_2348480_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|266aa|up_1|NZ_CP009335.1_2348498_2349296_+	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|298aa|up_0|NZ_CP009335.1_2349311_2350205_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|247aa|down_0|NZ_CP009335.1_2351782_2352523_-	PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional	NA|387aa|down_1|NZ_CP009335.1_2352597_2353758_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|312aa|down_2|NZ_CP009335.1_2353900_2354836_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|253aa|down_3|NZ_CP009335.1_2354842_2355601_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|282aa|down_4|NZ_CP009335.1_2355737_2356583_-	pfam05711, TylF, Macrocin-O-methyltransferase (TylF)	NA|296aa|down_5|NZ_CP009335.1_2356705_2357593_-	pfam18573, BclA_C, BclA C-terminal domain	NA|367aa|down_6|NZ_CP009335.1_2357758_2358859_+	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|230aa|down_7|NZ_CP009335.1_2359010_2359700_+	pfam08242, Methyltransf_12, Methyltransferase domain	NA|229aa|down_8|NZ_CP009335.1_2359696_2360383_+	pfam13712, Glyco_tranf_2_5, Glycosyltransferase like family	NA|227aa|down_9|NZ_CP009335.1_2360395_2361076_+	pfam13712, Glyco_tranf_2_5, Glycosyltransferase like family
GCF_000832485.1_ASM83248v1	NZ_CP009335	Bacillus thuringiensis strain HD1011 chromosome, complete genome	2	3941459-3941633	1	PILER-CR	no		csa3,cas3,c2c9_V-U4,DEDDh,WYL,cas14k,DinG,cas14j	Orphan	ATTTCGGAATGAATGTTCATTCCTCTC	27	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,c2c9_V-U4,DEDDh,WYL,cas14k,DinG,cas14j,Cas14u_CAS-V	NA,NA	NA|234aa|up_9|NZ_CP009335.1_3927869_3928571_-	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins	NA|228aa|up_8|NZ_CP009335.1_3928587_3929271_-	cd06561, AlkD_like, A new structural DNA glycosylase	NA|87aa|up_7|NZ_CP009335.1_3929636_3929897_-	PRK10811, rne, ribonuclease E; Reviewed	NA|276aa|up_6|NZ_CP009335.1_3930114_3930942_+	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|221aa|up_5|NZ_CP009335.1_3931097_3931760_+	pfam12952, DUF3841, Domain of unknown function (DUF3841)	NA|224aa|up_4|NZ_CP009335.1_3931870_3932542_+	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|658aa|up_3|NZ_CP009335.1_3932601_3934575_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|542aa|up_2|NZ_CP009335.1_3935091_3936717_-	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|283aa|up_1|NZ_CP009335.1_3937094_3937943_-	PRK06761, PRK06761, hypothetical protein; Provisional	NA|1039aa|up_0|NZ_CP009335.1_3938280_3941397_-	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|189aa|down_0|NZ_CP009335.1_3941650_3942217_-	pfam16295, TetR_C_10, Tetracycline repressor, C-terminal all-alpha domain	NA|386aa|down_1|NZ_CP009335.1_3942486_3943644_-	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]	NA|430aa|down_2|NZ_CP009335.1_3943931_3945221_-	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|367aa|down_3|NZ_CP009335.1_3945237_3946338_-	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|367aa|down_4|NZ_CP009335.1_3946330_3947431_-	PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated	NA|391aa|down_5|NZ_CP009335.1_3947449_3948622_-	PRK12463, PRK12463, chorismate synthase; Reviewed	NA|359aa|down_6|NZ_CP009335.1_3948906_3949983_-	PRK12595, PRK12595, bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed	NA|1171aa|down_7|NZ_CP009335.1_3950814_3954327_-	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	NA|146aa|down_8|NZ_CP009335.1_3954477_3954915_+	pfam10710, DUF2512, Protein of unknown function (DUF2512)	NA|177aa|down_9|NZ_CP009335.1_3955063_3955594_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases
GCF_000832485.1_ASM83248v1	NZ_CP009335	Bacillus thuringiensis strain HD1011 chromosome, complete genome	3	4507062-4507164	2	CRISPRCasFinder	no	csa3	csa3,cas3,c2c9_V-U4,DEDDh,WYL,cas14k,DinG,cas14j	Type I-A	AAGTTTAGGTTTCTTTTGAGAATGT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,c2c9_V-U4,DEDDh,WYL,cas14k,DinG,cas14j,Cas14u_CAS-V	NA|77aa|up_5|NZ_CP009335.1_4501721_4501952_+,NA|218aa|down_0|NZ_CP009335.1_4507803_4508457_-,NA|58aa|down_1|NZ_CP009335.1_4508561_4508735_+,NA|105aa|down_8|NZ_CP009335.1_4515708_4516023_+	NA|514aa|up_9|NZ_CP009335.1_4495843_4497385_-	PRK09441, PRK09441, cytoplasmic alpha-amylase; Reviewed	NA|264aa|up_8|NZ_CP009335.1_4497600_4498392_+	COG2162, NhoA, Arylamine N-acetyltransferase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|596aa|up_7|NZ_CP009335.1_4498508_4500296_+	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|378aa|up_6|NZ_CP009335.1_4500331_4501465_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|77aa|up_5|NZ_CP009335.1_4501721_4501952_+	NA	NA|411aa|up_4|NZ_CP009335.1_4502062_4503295_-	cd17475, MFS_MT3072_like, Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072 and similar transporters of the Major Facilitator Superfamily	NA|284aa|up_3|NZ_CP009335.1_4503380_4504232_+	cd08442, PBP2_YofA_SoxR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold	NA|170aa|up_2|NZ_CP009335.1_4504224_4504734_+	pfam13079, DUF3916, Protein of unknown function (DUF3916)	NA|226aa|up_1|NZ_CP009335.1_4504827_4505505_+	cd06259, YdcF-like, YdcF-like	NA|315aa|up_0|NZ_CP009335.1_4505554_4506499_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|218aa|down_0|NZ_CP009335.1_4507803_4508457_-	NA	NA|58aa|down_1|NZ_CP009335.1_4508561_4508735_+	NA	NA|540aa|down_2|NZ_CP009335.1_4509063_4510683_-	pfam01494, FAD_binding_3, FAD binding domain	csa3|115aa|down_3|NZ_CP009335.1_4511150_4511495_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|333aa|down_4|NZ_CP009335.1_4511513_4512512_+	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|107aa|down_5|NZ_CP009335.1_4512622_4512943_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|down_6|NZ_CP009335.1_4512912_4513818_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|489aa|down_7|NZ_CP009335.1_4514011_4515478_+	PRK00029, PRK00029, YdiU family protein	NA|105aa|down_8|NZ_CP009335.1_4515708_4516023_+	NA	NA|366aa|down_9|NZ_CP009335.1_4516227_4517325_+	sd00006, TPR, Tetratricopeptide repeat
GCF_000832485.1_ASM83248v1	NZ_CP009334	Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence	1	201751-201888	1	CRISPRCasFinder	no			Orphan	CTTCTTGCTTTTGAACAGGTTTAG	24	0	0	NA	NA	NA	2	2	Orphan	csa3,cas3,c2c9_V-U4,DEDDh,WYL,cas14k,DinG,cas14j,Cas14u_CAS-V	NA|108aa|up_9|NZ_CP009334.1_195437_195761_-,NA|86aa|up_8|NZ_CP009334.1_195781_196039_-,NA|237aa|up_7|NZ_CP009334.1_196363_197074_-,NA|120aa|up_6|NZ_CP009334.1_197085_197445_-,NA|127aa|up_5|NZ_CP009334.1_197463_197844_-,NA|139aa|up_4|NZ_CP009334.1_197849_198266_-,NA|247aa|up_3|NZ_CP009334.1_198285_199026_-,NA|204aa|up_2|NZ_CP009334.1_199133_199745_-,NA|133aa|up_1|NZ_CP009334.1_199822_200221_-,NA|139aa|down_2|NZ_CP009334.1_215613_216030_-,NA|194aa|down_3|NZ_CP009334.1_216109_216691_-,NA|137aa|down_9|NZ_CP009334.1_230640_231051_-	NA|108aa|up_9|NZ_CP009334.1_195437_195761_-	NA	NA|86aa|up_8|NZ_CP009334.1_195781_196039_-	NA	NA|237aa|up_7|NZ_CP009334.1_196363_197074_-	NA	NA|120aa|up_6|NZ_CP009334.1_197085_197445_-	NA	NA|127aa|up_5|NZ_CP009334.1_197463_197844_-	NA	NA|139aa|up_4|NZ_CP009334.1_197849_198266_-	NA	NA|247aa|up_3|NZ_CP009334.1_198285_199026_-	NA	NA|204aa|up_2|NZ_CP009334.1_199133_199745_-	NA	NA|133aa|up_1|NZ_CP009334.1_199822_200221_-	NA	NA|283aa|up_0|NZ_CP009334.1_200387_201236_-	cd10446, GIY-YIG_unchar_1, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|3527aa|down_0|NZ_CP009334.1_203143_213724_-	TIGR04226, Fimbrial_subunit_type_2, fimbrial isopeptide formation D2 domain	NA|353aa|down_1|NZ_CP009334.1_214302_215361_-	pfam16403, DUF5011, Domain of unknown function (DUF5011)	NA|139aa|down_2|NZ_CP009334.1_215613_216030_-	NA	NA|194aa|down_3|NZ_CP009334.1_216109_216691_-	NA	NA|237aa|down_4|NZ_CP009334.1_216710_217421_-	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|471aa|down_5|NZ_CP009334.1_217581_218994_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|2561aa|down_6|NZ_CP009334.1_219416_227099_-	COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]	NA|423aa|down_7|NZ_CP009334.1_227738_229007_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|396aa|down_8|NZ_CP009334.1_229216_230404_-	smart00475, 53EXOc, 5'-3' exonuclease	NA|137aa|down_9|NZ_CP009334.1_230640_231051_-	NA
