assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000832305.1_ASM83230v1	NZ_CP010537	Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence	1	47791-47887	1	PILER-CR	no		c2c9_V-U4,csa3,DEDDh	Orphan	CCACGCAGAAACGGGTACGC	20	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,DinG,DEDDh,WYL,csa3,c2c9_V-U4	NA|111aa|up_3|NZ_CP010537.1_44705_45038_-,NA|61aa|down_3|NZ_CP010537.1_53468_53651_-	NA|382aa|up_9|NZ_CP010537.1_37154_38300_+	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins	NA|421aa|up_8|NZ_CP010537.1_38337_39600_-	PRK10307, PRK10307, colanic acid biosynthesis glycosyltransferase WcaI	NA|361aa|up_7|NZ_CP010537.1_39720_40803_-	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH	NA|331aa|up_6|NZ_CP010537.1_40804_41797_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|407aa|up_5|NZ_CP010537.1_41843_43064_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|475aa|up_4|NZ_CP010537.1_43050_44475_-	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA|111aa|up_3|NZ_CP010537.1_44705_45038_-	NA	NA|239aa|up_2|NZ_CP010537.1_45691_46408_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|64aa|up_1|NZ_CP010537.1_46475_46667_-	pfam13318, DUF4089, Protein of unknown function (DUF4089)	NA|148aa|up_0|NZ_CP010537.1_47319_47763_+	PRK02866, PRK02866, cyanate hydratase; Validated	NA|202aa|down_0|NZ_CP010537.1_48230_48836_-	pfam00072, Response_reg, Response regulator receiver domain	NA|676aa|down_1|NZ_CP010537.1_49244_51272_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|558aa|down_2|NZ_CP010537.1_51268_52942_+	cd01948, EAL, EAL domain	NA|61aa|down_3|NZ_CP010537.1_53468_53651_-	NA	NA|236aa|down_4|NZ_CP010537.1_54060_54768_+	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only]	NA|171aa|down_5|NZ_CP010537.1_54808_55321_-	PRK00439, leuD, 3-isopropylmalate dehydratase small subunit; Reviewed	NA|436aa|down_6|NZ_CP010537.1_55317_56625_-	PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit; Reviewed	NA|338aa|down_7|NZ_CP010537.1_56621_57635_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|260aa|down_8|NZ_CP010537.1_57700_58480_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|486aa|down_9|NZ_CP010537.1_59141_60599_+	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional
GCF_000832305.1_ASM83230v1	NZ_CP010537	Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence	2	161084-161184	1	CRISPRCasFinder	no	c2c9_V-U4	c2c9_V-U4,csa3,DEDDh	Type V-U4	GGATCCGTTCTCGGACGGCGCGC	23	0	0	NA	NA	NA	1	1	TypeV-U4	cas3,RT,DinG,DEDDh,WYL,csa3,c2c9_V-U4	NA|174aa|up_2|NZ_CP010537.1_159136_159658_+,NA|233aa|down_1|NZ_CP010537.1_162530_163229_-	NA|178aa|up_9|NZ_CP010537.1_152804_153338_+	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|190aa|up_8|NZ_CP010537.1_153401_153971_+	TIGR02258, UPF0097_protein_AF_2157, 2'-5' RNA ligase	NA|213aa|up_7|NZ_CP010537.1_154012_154651_-	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|313aa|up_6|NZ_CP010537.1_154774_155713_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|250aa|up_5|NZ_CP010537.1_155939_156689_+	pfam07317, YcgR, Flagellar regulator YcgR	NA|366aa|up_4|NZ_CP010537.1_156712_157810_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|283aa|up_3|NZ_CP010537.1_157857_158706_-	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family	NA|174aa|up_2|NZ_CP010537.1_159136_159658_+	NA	NA|117aa|up_1|NZ_CP010537.1_159717_160068_-	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|181aa|up_0|NZ_CP010537.1_160116_160659_-	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain	NA|330aa|down_0|NZ_CP010537.1_161529_162519_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_1|NZ_CP010537.1_162530_163229_-	NA	NA|320aa|down_2|NZ_CP010537.1_163349_164309_-	pfam06675, DUF1177, Protein of unknown function (DUF1177)	NA|383aa|down_3|NZ_CP010537.1_164955_166104_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|252aa|down_4|NZ_CP010537.1_166229_166985_-	PRK05282, PRK05282, dipeptidase PepE	NA|395aa|down_5|NZ_CP010537.1_167019_168204_-	cd06453, SufS_like, Cysteine desulfurase (SufS)-like	NA|530aa|down_6|NZ_CP010537.1_168249_169839_-	COG1297, COG1297, Predicted membrane protein [Function unknown]	NA|928aa|down_7|NZ_CP010537.1_170281_173065_+	pfam10101, DUF2339, Predicted membrane protein (DUF2339)	NA|255aa|down_8|NZ_CP010537.1_173061_173826_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|370aa|down_9|NZ_CP010537.1_173889_174999_-	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system
GCF_000832305.1_ASM83230v1	NZ_CP010536	Cupriavidus basilensis strain 4G11 chromosome main, complete sequence	1	1250762-1250892	1	CRISPRCasFinder	no		cas3,RT,DinG,DEDDh,WYL,csa3	Orphan	GCTCATCGGAGCATGCTGGATCGATATCGTCCACCTCGCCAACACTC	47	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DinG,DEDDh,WYL,csa3,c2c9_V-U4	NA,NA|59aa|down_2|NZ_CP010536.1_1252507_1252684_+,NA|254aa|down_5|NZ_CP010536.1_1254620_1255382_+	NA|546aa|up_9|NZ_CP010536.1_1240990_1242628_+	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB	NA|402aa|up_8|NZ_CP010536.1_1242627_1243833_+	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC	NA|283aa|up_7|NZ_CP010536.1_1243829_1244678_+	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD	NA|231aa|up_6|NZ_CP010536.1_1244711_1245404_+	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE	NA|291aa|up_5|NZ_CP010536.1_1245644_1246517_+	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones]	NA|101aa|up_4|NZ_CP010536.1_1246583_1246886_+	PRK13241, ureA, urease subunit gamma; Provisional	NA|211aa|up_3|NZ_CP010536.1_1246930_1247563_+	pfam04955, HupE_UreJ, HupE / UreJ protein	NA|102aa|up_2|NZ_CP010536.1_1247591_1247897_+	PRK13203, ureB, urease subunit beta; Reviewed	NA|573aa|up_1|NZ_CP010536.1_1247896_1249615_+	PRK13207, ureC, urease subunit alpha; Reviewed	NA|212aa|up_0|NZ_CP010536.1_1249624_1250260_+	PRK13263, ureE, urease accessory protein UreE; Provisional	NA|231aa|down_0|NZ_CP010536.1_1251002_1251695_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|210aa|down_1|NZ_CP010536.1_1251746_1252376_+	cd05540, UreG, urease accessory protein UreG	NA|59aa|down_2|NZ_CP010536.1_1252507_1252684_+	NA	NA|340aa|down_3|NZ_CP010536.1_1252785_1253805_+	cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen	NA|130aa|down_4|NZ_CP010536.1_1253816_1254206_-	pfam01381, HTH_3, Helix-turn-helix	NA|254aa|down_5|NZ_CP010536.1_1254620_1255382_+	NA	NA|231aa|down_6|NZ_CP010536.1_1255415_1256108_-	PRK11752, PRK11752, putative S-transferase; Provisional	NA|421aa|down_7|NZ_CP010536.1_1256296_1257559_-	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2	NA|312aa|down_8|NZ_CP010536.1_1257751_1258687_+	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold	NA|503aa|down_9|NZ_CP010536.1_1258712_1260221_-	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau
GCF_000832305.1_ASM83230v1	NZ_CP010536	Cupriavidus basilensis strain 4G11 chromosome main, complete sequence	2	3234232-3234332	2	CRISPRCasFinder	no		cas3,RT,DinG,DEDDh,WYL,csa3	Orphan	ACCAACAAGGACGGCTATGTGCC	23	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,DinG,DEDDh,WYL,csa3,c2c9_V-U4	NA|111aa|up_1|NZ_CP010536.1_3232943_3233276_+,NA|156aa|up_0|NZ_CP010536.1_3233332_3233800_+,NA	NA|180aa|up_9|NZ_CP010536.1_3223566_3224106_-	cd17511, YbjN_AmyR-like, YbjN protein family is structurally similar to type III secretion system chaperones	NA|314aa|up_8|NZ_CP010536.1_3224204_3225146_-	pfam00639, Rotamase, PPIC-type PPIASE domain	NA|256aa|up_7|NZ_CP010536.1_3225337_3226105_-	pfam12128, DUF3584, Protein of unknown function (DUF3584)	NA|588aa|up_6|NZ_CP010536.1_3226115_3227879_-	pfam16930, Porin_5, Putative porin	NA|221aa|up_5|NZ_CP010536.1_3227965_3228628_-	TIGR04526, predic_Ig_block, putative immunoglobulin-blocking virulence protein	NA|137aa|up_4|NZ_CP010536.1_3228686_3229097_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|600aa|up_3|NZ_CP010536.1_3229112_3230912_-	COG5306, COG5306, Uncharacterized conserved protein [Function unknown]	NA|546aa|up_2|NZ_CP010536.1_3230979_3232617_-	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|111aa|up_1|NZ_CP010536.1_3232943_3233276_+	NA	NA|156aa|up_0|NZ_CP010536.1_3233332_3233800_+	NA	NA|759aa|down_0|NZ_CP010536.1_3234763_3237040_-	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|605aa|down_1|NZ_CP010536.1_3237526_3239341_-	PRK05667, dnaG, DNA primase; Validated	NA|150aa|down_2|NZ_CP010536.1_3239566_3240016_-	pfam09424, YqeY, Yqey-like protein	NA|71aa|down_3|NZ_CP010536.1_3240146_3240359_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|425aa|down_4|NZ_CP010536.1_3240470_3241745_-	COG2081, COG2081, Predicted flavoproteins [General function prediction only]	NA|347aa|down_5|NZ_CP010536.1_3241929_3242970_+	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	NA|268aa|down_6|NZ_CP010536.1_3243035_3243839_-	PRK13674, PRK13674, GTP cyclohydrolase I FolE2	NA|637aa|down_7|NZ_CP010536.1_3244087_3245998_-	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|310aa|down_8|NZ_CP010536.1_3246057_3246987_-	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase	NA|97aa|down_9|NZ_CP010536.1_3246983_3247274_-	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional
GCF_000832305.1_ASM83230v1	NZ_CP010536	Cupriavidus basilensis strain 4G11 chromosome main, complete sequence	3	3807863-3807963	3	CRISPRCasFinder	no		cas3,RT,DinG,DEDDh,WYL,csa3	Orphan	TGCTCGGCGGGCTGATGGGCGGC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DinG,DEDDh,WYL,csa3,c2c9_V-U4	NA,NA	NA|879aa|up_9|NZ_CP010536.1_3796058_3798695_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|266aa|up_8|NZ_CP010536.1_3798841_3799639_-	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|188aa|up_7|NZ_CP010536.1_3799702_3800266_-	pfam04355, SmpA_OmlA, SmpA / OmlA family	NA|144aa|up_6|NZ_CP010536.1_3800465_3800897_+	PRK09462, fur, ferric uptake regulator; Provisional	NA|330aa|up_5|NZ_CP010536.1_3800968_3801958_-	cd08466, PBP2_LeuO, The C-terminal substrate binding domain of LysR-type transcriptional regulator LeuO, an activator of  leucine synthesis operon, contains the type 2 periplasmic binding fold	NA|333aa|up_4|NZ_CP010536.1_3802241_3803240_-	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]	NA|679aa|up_3|NZ_CP010536.1_3803337_3805374_-	PRK12753, PRK12753, transketolase; Reviewed	NA|279aa|up_2|NZ_CP010536.1_3805504_3806341_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|147aa|up_1|NZ_CP010536.1_3806413_3806854_+	COG2764, PhnB, Uncharacterized protein conserved in bacteria [Function unknown]	NA|253aa|up_0|NZ_CP010536.1_3806853_3807612_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|200aa|down_0|NZ_CP010536.1_3808340_3808940_-	pfam01337, Barstar, Barstar (barnase inhibitor)	NA|123aa|down_1|NZ_CP010536.1_3808936_3809305_-	cd00607, RNase_Sa, RNase_Sa	NA|775aa|down_2|NZ_CP010536.1_3809701_3812026_-	PRK12862, PRK12862, malic enzyme; Reviewed	NA|327aa|down_3|NZ_CP010536.1_3812300_3813281_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|189aa|down_4|NZ_CP010536.1_3813386_3813953_+	pfam04608, PgpA, Phosphatidylglycerophosphatase A	NA|166aa|down_5|NZ_CP010536.1_3813991_3814489_+	pfam02464, CinA, Competence-damaged protein	NA|273aa|down_6|NZ_CP010536.1_3814536_3815355_-	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed	NA|321aa|down_7|NZ_CP010536.1_3816138_3817101_+	cd12835, EcCorA-like_1, Escherichia coli Mg2+ transporter CorA_like subgroup	NA|234aa|down_8|NZ_CP010536.1_3817124_3817826_-	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional	NA|292aa|down_9|NZ_CP010536.1_3817918_3818794_-	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed
GCF_000832305.1_ASM83230v1	NZ_CP010536	Cupriavidus basilensis strain 4G11 chromosome main, complete sequence	4	4296928-4297022	4	CRISPRCasFinder	no		cas3,RT,DinG,DEDDh,WYL,csa3	Orphan	GCCTTGGCACCGTCGGTGAACGT	23	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DinG,DEDDh,WYL,csa3,c2c9_V-U4	NA,NA|56aa|down_3|NZ_CP010536.1_4299527_4299695_-,NA|145aa|down_9|NZ_CP010536.1_4306314_4306749_+	NA|404aa|up_9|NZ_CP010536.1_4282265_4283477_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|308aa|up_8|NZ_CP010536.1_4283589_4284513_-	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional	NA|592aa|up_7|NZ_CP010536.1_4284877_4286653_+	PRK11269, PRK11269, glyoxylate carboligase; Provisional	NA|261aa|up_6|NZ_CP010536.1_4286774_4287557_+	COG3622, Hfi, Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]	NA|309aa|up_5|NZ_CP010536.1_4287608_4288535_+	PRK15059, PRK15059, 2-hydroxy-3-oxopropionate reductase	NA|438aa|up_4|NZ_CP010536.1_4288623_4289937_+	COG2379, GckA, Putative glycerate kinase [Carbohydrate transport and metabolism]	NA|493aa|up_3|NZ_CP010536.1_4290001_4291480_+	PRK06247, PRK06247, pyruvate kinase; Provisional	NA|298aa|up_2|NZ_CP010536.1_4291581_4292475_+	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase	NA|252aa|up_1|NZ_CP010536.1_4292605_4293361_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|1033aa|up_0|NZ_CP010536.1_4293515_4296614_+	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|140aa|down_0|NZ_CP010536.1_4297645_4298065_-	PRK05753, PRK05753, nucleoside diphosphate kinase regulator; Provisional	NA|147aa|down_1|NZ_CP010536.1_4298598_4299039_-	cd04784, HTH_CadR-PbrR, Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators	NA|126aa|down_2|NZ_CP010536.1_4299139_4299517_-	TIGR03330, SAM_DCase_Bsu, S-adenosylmethionine decarboxylase proenzyme, Bacillus form	NA|56aa|down_3|NZ_CP010536.1_4299527_4299695_-	NA	NA|507aa|down_4|NZ_CP010536.1_4299701_4301222_-	pfam13785, DUF4178, Domain of unknown function (DUF4178)	NA|345aa|down_5|NZ_CP010536.1_4301243_4302278_-	COG4260, COG4260, Membrane protease subunit, stomatin/prohibitin family [Amino acid    transport and metabolism]	NA|129aa|down_6|NZ_CP010536.1_4302322_4302709_-	COG3766, COG3766, Predicted membrane protein [Function unknown]	NA|504aa|down_7|NZ_CP010536.1_4302997_4304509_+	PRK03612, PRK03612, polyamine aminopropyltransferase	NA|573aa|down_8|NZ_CP010536.1_4304536_4306255_+	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain	NA|145aa|down_9|NZ_CP010536.1_4306314_4306749_+	NA
