assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000831565.1_ASM83156v1	NZ_CP010344	Escherichia coli ECC-1470 chromosome, complete genome	1	70997-71106	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TGCCGGATGCACTTTGCTTATCCGG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|274aa|up_9|NZ_CP010344.1_56153_56975_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_8|NZ_CP010344.1_56971_57961_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_7|NZ_CP010344.1_57960_59247_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_6|NZ_CP010344.1_59299_61654_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_5|NZ_CP010344.1_61908_62724_+	PRK09430, djlA, co-chaperone DjlA	NA|327aa|up_4|NZ_CP010344.1_62843_63824_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|220aa|up_3|NZ_CP010344.1_64119_64779_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP010344.1_64790_67697_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP010344.1_67861_70213_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP010344.1_70287_70983_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP010344.1_71182_72685_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP010344.1_72695_74396_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP010344.1_74734_75613_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP010344.1_75698_76463_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP010344.1_76576_77275_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP010344.1_77258_78869_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP010344.1_78844_79828_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|552aa|down_7|NZ_CP010344.1_79991_81647_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_8|NZ_CP010344.1_81735_81867_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|393aa|down_9|NZ_CP010344.1_81967_83146_+	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter
GCF_000831565.1_ASM83156v1	NZ_CP010344	Escherichia coli ECC-1470 chromosome, complete genome	2	589855-589951	2	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|454aa|up_9|NZ_CP010344.1_577734_579096_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP010344.1_579152_580454_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP010344.1_580475_581621_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP010344.1_581749_582535_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NZ_CP010344.1_582545_583781_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP010344.1_583802_584852_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP010344.1_585168_586836_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP010344.1_586845_588105_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP010344.1_588115_588931_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP010344.1_588927_589821_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP010344.1_590015_591083_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP010344.1_591079_591589_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP010344.1_591706_592429_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP010344.1_592431_592926_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP010344.1_593099_594485_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP010344.1_594520_595042_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP010344.1_595149_595362_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP010344.1_595363_596230_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP010344.1_596710_597253_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP010344.1_597472_598165_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_000831565.1_ASM83156v1	NZ_CP010344	Escherichia coli ECC-1470 chromosome, complete genome	3	870852-870997	3	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGGCACTTATTGTCGGATGCGATGCTTGCGCATCTTATCCGACCTACGAATCG	53	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|50aa|up_9|NZ_CP010344.1_859832_859982_+	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ	NA|258aa|up_8|NZ_CP010344.1_860147_860921_+	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|230aa|up_7|NZ_CP010344.1_860920_861610_+	PRK09421, modB, molybdate ABC transporter permease subunit	NA|353aa|up_6|NZ_CP010344.1_861612_862671_+	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|273aa|up_5|NZ_CP010344.1_862671_863490_-	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|332aa|up_4|NZ_CP010344.1_863644_864640_+	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|318aa|up_3|NZ_CP010344.1_864680_865634_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|351aa|up_2|NZ_CP010344.1_865817_866870_+	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|478aa|up_1|NZ_CP010344.1_866945_868379_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|754aa|up_0|NZ_CP010344.1_868561_870823_+	PRK11413, PRK11413, putative hydratase; Provisional	NA|428aa|down_0|NZ_CP010344.1_871056_872340_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|159aa|down_1|NZ_CP010344.1_872491_872968_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_2|NZ_CP010344.1_873026_874316_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_3|NZ_CP010344.1_874402_875443_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|385aa|down_4|NZ_CP010344.1_875439_876594_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_5|NZ_CP010344.1_876580_877336_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|226aa|down_6|NZ_CP010344.1_877328_878006_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|674aa|down_7|NZ_CP010344.1_878584_880606_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|303aa|down_8|NZ_CP010344.1_880797_881706_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|330aa|down_9|NZ_CP010344.1_882102_883092_+	PRK00164, moaA, GTP 3',8-cyclase MoaA
GCF_000831565.1_ASM83156v1	NZ_CP010344	Escherichia coli ECC-1470 chromosome, complete genome	4	992645-992793	4	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAAT	29	0	0	NA	NA	I-F	2	2	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|551aa|up_9|NZ_CP010344.1_979053_980706_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP010344.1_980849_981749_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP010344.1_982243_982939_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP010344.1_983365_985024_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP010344.1_985020_985977_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP010344.1_986127_987243_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP010344.1_987239_989186_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP010344.1_989258_989483_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP010344.1_989805_990126_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP010344.1_990156_992433_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP010344.1_993176_993395_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP010344.1_993679_994384_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP010344.1_994425_996147_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP010344.1_996147_997914_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP010344.1_998036_999002_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP010344.1_999546_1000041_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1356aa|down_6|NZ_CP010344.1_1000175_1004243_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP010344.1_1004397_1005009_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP010344.1_1005019_1006363_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP010344.1_1006453_1007746_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_000831565.1_ASM83156v1	NZ_CP010344	Escherichia coli ECC-1470 chromosome, complete genome	5	2981305-2982491	5,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	19,19,18	19	TypeI-E	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP010344.1_2973117_2973879_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP010344.1_2973859_2974909_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP010344.1_2974905_2975385_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP010344.1_2975384_2976095_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP010344.1_2976113_2976425_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP010344.1_2976618_2976942_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP010344.1_2976991_2977597_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP010344.1_2977596_2979024_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP010344.1_2979025_2979934_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP010344.1_2980185_2981223_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP010344.1_2982587_2982881_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP010344.1_2982880_2983801_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP010344.1_2983797_2984448_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP010344.1_2984429_2985176_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP010344.1_2985186_2986242_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP010344.1_2986253_2986790_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP010344.1_2986786_2988349_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP010344.1_2988446_2991146_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP010344.1_2991340_2991493_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP010344.1_2991757_2992492_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000831565.1_ASM83156v1	NZ_CP010344	Escherichia coli ECC-1470 chromosome, complete genome	6	3008180-3008879	6,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGA	29,29,24	0	0	NA	NA	I-E:I-E:I-E	11,11,11	11	Unclear	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|47aa|down_1|NZ_CP010344.1_3010028_3010169_+	NA|424aa|up_9|NZ_CP010344.1_2996835_2998107_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP010344.1_2998097_2998358_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP010344.1_2998374_2998950_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|283aa|up_6|NZ_CP010344.1_2999097_2999946_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP010344.1_2999942_3000722_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP010344.1_3000699_3002109_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP010344.1_3002130_3003585_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP010344.1_3003654_3004440_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP010344.1_3004758_3006036_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP010344.1_3006062_3007541_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP010344.1_3009218_3009890_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP010344.1_3010028_3010169_+	NA	NA|291aa|down_2|NZ_CP010344.1_3010182_3011055_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP010344.1_3011114_3012413_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP010344.1_3012500_3014138_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP010344.1_3014365_3015157_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP010344.1_3015227_3015563_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP010344.1_3015562_3015811_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP010344.1_3015888_3018123_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP010344.1_3018170_3019472_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
