assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	1	334159-334364	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCCGCCGGCCCCG---------------CCGGCCCCGCCGA	41	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|58aa|up_0|NZ_CP009480.1_332987_333161_-,NA|87aa|down_0|NZ_CP009480.1_338826_339087_+	NA|398aa|up_9|NZ_CP009480.1_323165_324359_-	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]	NA|561aa|up_8|NZ_CP009480.1_324394_326077_+	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|732aa|up_7|NZ_CP009480.1_326093_328289_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|378aa|up_6|NZ_CP009480.1_328402_329536_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|207aa|up_5|NZ_CP009480.1_329532_330153_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|up_4|NZ_CP009480.1_330249_330831_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|242aa|up_3|NZ_CP009480.1_330760_331486_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|307aa|up_2|NZ_CP009480.1_331575_332496_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|143aa|up_1|NZ_CP009480.1_332535_332964_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|58aa|up_0|NZ_CP009480.1_332987_333161_-	NA	NA|87aa|down_0|NZ_CP009480.1_338826_339087_+	NA	NA|537aa|down_1|NZ_CP009480.1_339083_340694_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|303aa|down_2|NZ_CP009480.1_340717_341626_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|632aa|down_3|NZ_CP009480.1_341849_343745_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|539aa|down_4|NZ_CP009480.1_343741_345358_+	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|1331aa|down_5|NZ_CP009480.1_345354_349347_+	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|103aa|down_6|NZ_CP009480.1_349343_349652_+	pfam00934, PE, PE family	NA|514aa|down_7|NZ_CP009480.1_349654_351196_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|98aa|down_8|NZ_CP009480.1_351244_351538_+	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|97aa|down_9|NZ_CP009480.1_351567_351858_+	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	2	366183-366881	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	366471-366512|366546-366578	NZ_CP009480.1_374503-374544|NZ_CP009480.1_373318-373350	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP009480.1_363195_363498_+,NA|161aa|down_2|NZ_CP009480.1_376292_376775_-,NA|410aa|down_6|NZ_CP009480.1_378891_380121_+	NA|262aa|up_9|NZ_CP009480.1_357890_358676_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP009480.1_358664_359468_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP009480.1_359477_360875_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|592aa|up_6|NZ_CP009480.1_361053_362829_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP009480.1_362971_363199_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP009480.1_363195_363498_+	NA	NA|74aa|up_3|NZ_CP009480.1_363545_363767_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP009480.1_363763_364189_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP009480.1_364324_364957_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP009480.1_364953_365862_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|964aa|down_0|NZ_CP009480.1_372539_375431_-	pfam00823, PPE, PPE family	NA|224aa|down_1|NZ_CP009480.1_375633_376305_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_2|NZ_CP009480.1_376292_376775_-	NA	NA|239aa|down_3|NZ_CP009480.1_376832_377549_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_4|NZ_CP009480.1_377650_378307_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_5|NZ_CP009480.1_378376_378868_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_6|NZ_CP009480.1_378891_380121_+	NA	NA|621aa|down_7|NZ_CP009480.1_380275_382138_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_8|NZ_CP009480.1_382209_382596_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_9|NZ_CP009480.1_382598_383261_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	3	691431-691507	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP009480.1_677115_677331_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP009480.1_677327_677735_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP009480.1_677794_678481_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP009480.1_678634_681268_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP009480.1_681290_683678_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP009480.1_683815_684538_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP009480.1_684534_685332_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP009480.1_685333_686221_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP009480.1_686226_687441_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP009480.1_688464_689910_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP009480.1_692642_694193_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP009480.1_694244_694637_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP009480.1_694633_694891_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP009480.1_695073_696309_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP009480.1_696559_696973_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP009480.1_696969_697206_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP009480.1_697309_697816_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP009480.1_697929_698400_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP009480.1_698443_699205_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP009480.1_699261_699573_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	4	836397-836524	2	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCCG---------------CCGGCCCCGCCGT	32	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|71aa|up_9|NZ_CP009480.1_829106_829319_+,NA|176aa|up_6|NZ_CP009480.1_831181_831709_+,NA|186aa|up_3|NZ_CP009480.1_833291_833849_-,NA|81aa|down_0|NZ_CP009480.1_836960_837203_+,NA|46aa|down_3|NZ_CP009480.1_840124_840262_-,NA|82aa|down_4|NZ_CP009480.1_840420_840666_+	NA|71aa|up_9|NZ_CP009480.1_829106_829319_+	NA	NA|183aa|up_8|NZ_CP009480.1_829467_830016_+	TIGR03086, TIGR03086, TIGR03086 family protein	NA|269aa|up_7|NZ_CP009480.1_830260_831067_+	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|176aa|up_6|NZ_CP009480.1_831181_831709_+	NA	NA|105aa|up_5|NZ_CP009480.1_831939_832254_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|176aa|up_4|NZ_CP009480.1_832386_832914_+	pfam00934, PE, PE family	NA|186aa|up_3|NZ_CP009480.1_833291_833849_-	NA	NA|169aa|up_2|NZ_CP009480.1_833845_834352_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|49aa|up_1|NZ_CP009480.1_834464_834611_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|176aa|up_0|NZ_CP009480.1_834559_835087_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|81aa|down_0|NZ_CP009480.1_836960_837203_+	NA	NA|86aa|down_1|NZ_CP009480.1_839334_839592_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|143aa|down_2|NZ_CP009480.1_839615_840044_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|46aa|down_3|NZ_CP009480.1_840124_840262_-	NA	NA|82aa|down_4|NZ_CP009480.1_840420_840666_+	NA	NA|295aa|down_5|NZ_CP009480.1_840734_841619_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|391aa|down_6|NZ_CP009480.1_841629_842802_-	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|511aa|down_7|NZ_CP009480.1_842808_844341_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|585aa|down_8|NZ_CP009480.1_844546_846301_+	pfam00934, PE, PE family	NA|646aa|down_9|NZ_CP009480.1_846490_848428_-	pfam00823, PPE, PPE family
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	5	838411-838553	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGGCGGAAGCGGTGGTGCCGGCGCGGTCGGTGGCAATGGCGGGGCCGG	50	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|176aa|up_7|NZ_CP009480.1_831181_831709_+,NA|186aa|up_4|NZ_CP009480.1_833291_833849_-,NA|81aa|up_0|NZ_CP009480.1_836960_837203_+,NA|46aa|down_2|NZ_CP009480.1_840124_840262_-,NA|82aa|down_3|NZ_CP009480.1_840420_840666_+,NA|242aa|down_9|NZ_CP009480.1_849128_849854_-	NA|183aa|up_9|NZ_CP009480.1_829467_830016_+	TIGR03086, TIGR03086, TIGR03086 family protein	NA|269aa|up_8|NZ_CP009480.1_830260_831067_+	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|176aa|up_7|NZ_CP009480.1_831181_831709_+	NA	NA|105aa|up_6|NZ_CP009480.1_831939_832254_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|176aa|up_5|NZ_CP009480.1_832386_832914_+	pfam00934, PE, PE family	NA|186aa|up_4|NZ_CP009480.1_833291_833849_-	NA	NA|169aa|up_3|NZ_CP009480.1_833845_834352_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|49aa|up_2|NZ_CP009480.1_834464_834611_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|176aa|up_1|NZ_CP009480.1_834559_835087_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|81aa|up_0|NZ_CP009480.1_836960_837203_+	NA	NA|86aa|down_0|NZ_CP009480.1_839334_839592_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|143aa|down_1|NZ_CP009480.1_839615_840044_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|46aa|down_2|NZ_CP009480.1_840124_840262_-	NA	NA|82aa|down_3|NZ_CP009480.1_840420_840666_+	NA	NA|295aa|down_4|NZ_CP009480.1_840734_841619_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|391aa|down_5|NZ_CP009480.1_841629_842802_-	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|511aa|down_6|NZ_CP009480.1_842808_844341_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|585aa|down_7|NZ_CP009480.1_844546_846301_+	pfam00934, PE, PE family	NA|646aa|down_8|NZ_CP009480.1_846490_848428_-	pfam00823, PPE, PPE family	NA|242aa|down_9|NZ_CP009480.1_849128_849854_-	NA
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	6	961720-961971	3	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	ACCTGGCGCCACCCGCGCCCGCCGAACTGGCGCCACCCGCGCCCGCCGACCTGGCACCACCCG	63	1	1	961893-961948	NZ_CP009480.1_962021-962076	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|67aa|up_3|NZ_CP009480.1_959818_960019_+,NA|64aa|down_4|NZ_CP009480.1_967378_967570_-	NA|158aa|up_9|NZ_CP009480.1_950395_950869_+	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|398aa|up_8|NZ_CP009480.1_950865_952059_-	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC	NA|404aa|up_7|NZ_CP009480.1_952215_953427_+	PRK08242, PRK08242, acetyl-CoA C-acetyltransferase	NA|721aa|up_6|NZ_CP009480.1_953431_955594_+	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|550aa|up_5|NZ_CP009480.1_955661_957311_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|757aa|up_4|NZ_CP009480.1_957480_959751_-	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain	NA|67aa|up_3|NZ_CP009480.1_959818_960019_+	NA	NA|168aa|up_2|NZ_CP009480.1_960028_960532_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|161aa|up_1|NZ_CP009480.1_960528_961011_+	cd00886, MogA_MoaB, MogA_MoaB family	NA|142aa|up_0|NZ_CP009480.1_961007_961433_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|93aa|down_0|NZ_CP009480.1_963121_963400_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|361aa|down_1|NZ_CP009480.1_963403_964486_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|130aa|down_2|NZ_CP009480.1_964482_964872_-	PRK11770, PRK11770, YccF domain-containing protein	NA|136aa|down_3|NZ_CP009480.1_965036_965444_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|64aa|down_4|NZ_CP009480.1_967378_967570_-	NA	NA|651aa|down_5|NZ_CP009480.1_967558_969511_+	cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase	NA|387aa|down_6|NZ_CP009480.1_969599_970760_-	COG4398, COG4398, Uncharacterized protein conserved in bacteria [Function unknown]	NA|163aa|down_7|NZ_CP009480.1_970859_971348_-	pfam10969, DUF2771, Protein of unknown function (DUF2771)	NA|549aa|down_8|NZ_CP009480.1_971344_972991_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|263aa|down_9|NZ_CP009480.1_973128_973917_+	pfam11228, DUF3027, Protein of unknown function (DUF3027)
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	7	1188359-1188467	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP009480.1_1177726_1179358_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP009480.1_1179433_1180498_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP009480.1_1180550_1181024_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP009480.1_1181057_1181921_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP009480.1_1181925_1182783_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP009480.1_1182783_1183866_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP009480.1_1183946_1184366_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP009480.1_1184477_1185044_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP009480.1_1185040_1185436_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|668aa|up_0|NZ_CP009480.1_1185463_1187467_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP009480.1_1189552_1191316_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP009480.1_1191312_1192086_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP009480.1_1192097_1193135_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP009480.1_1193321_1194158_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP009480.1_1194273_1195125_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP009480.1_1195198_1196416_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP009480.1_1196468_1197413_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|298aa|down_7|NZ_CP009480.1_1197809_1198703_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP009480.1_1198759_1200154_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP009480.1_1200355_1201078_+	pfam06271, RDD, RDD family
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	8	1208993-1209849	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GGCGGTGTCGGCGGTGCCGGCGG	23	4	65	1209376-1209397|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209676-1209694|1209718-1209736|1209760-1209781	NZ_CP009480.1_2954157-2954136|NZ_CP009480.1_337723-337705|NZ_CP009480.1_1210519-1210537|NZ_CP009480.1_1569455-1569437|NZ_CP009480.1_1629811-1629793|NZ_CP009480.1_1986309-1986291|NZ_CP009480.1_150029-150047|NZ_CP009480.1_150191-150209|NZ_CP009480.1_333610-333592|NZ_CP009480.1_335029-335011|NZ_CP009480.1_335373-335355|NZ_CP009480.1_335424-335406|NZ_CP009480.1_335433-335415|NZ_CP009480.1_337852-337834|NZ_CP009480.1_338242-338224|NZ_CP009480.1_362773-362755|NZ_CP009480.1_623669-623687|NZ_CP009480.1_673406-673388|NZ_CP009480.1_674240-674222|NZ_CP009480.1_838598-838616|NZ_CP009480.1_966115-966097|NZ_CP009480.1_1062910-1062892|NZ_CP009480.1_1088036-1088054|NZ_CP009480.1_1088663-1088681|NZ_CP009480.1_1092729-1092711|NZ_CP009480.1_1186658-1186640|NZ_CP009480.1_1210048-1210066|NZ_CP009480.1_1210438-1210456|NZ_CP009480.1_1214657-1214675|NZ_CP009480.1_1485821-1485803|NZ_CP009480.1_1569368-1569350|NZ_CP009480.1_1615096-1615078|NZ_CP009480.1_1627132-1627114|NZ_CP009480.1_1750719-1750737|NZ_CP009480.1_1859811-1859793|NZ_CP009480.1_1860339-1860321|NZ_CP009480.1_1985573-1985555|NZ_CP009480.1_2040541-2040523|NZ_CP009480.1_2084118-2084100|NZ_CP009480.1_2298817-2298799|NZ_CP009480.1_2352066-2352048|NZ_CP009480.1_2418719-2418701|NZ_CP009480.1_2687916-2687934|NZ_CP009480.1_2687925-2687943|NZ_CP009480.1_2790430-2790412|NZ_CP009480.1_2797314-2797296|NZ_CP009480.1_2799274-2799256|NZ_CP009480.1_3047791-3047809|NZ_CP009480.1_3047914-3047896|NZ_CP009480.1_3157114-3157096|NZ_CP009480.1_3730810-3730792|NZ_CP009480.1_3731810-3731792|NZ_CP009480.1_3795619-3795637|NZ_CP009480.1_3795899-3795917|NZ_CP009480.1_3920586-3920604|NZ_CP009480.1_3923716-3923734|NZ_CP009480.1_3925324-3925342|NZ_CP009480.1_3936748-3936766|NZ_CP009480.1_3937528-3937546|NZ_CP009480.1_3941689-3941707|NZ_CP009480.1_4024672-4024654|NZ_CP009480.1_4086557-4086539|NZ_CP009480.1_4086670-4086688|NZ_CP009480.1_792521-792539|NZ_CP009480.1_1569491-1569470	NA	16	16	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|89aa|up_4|NZ_CP009480.1_1204425_1204692_+,NA|90aa|up_0|NZ_CP009480.1_1208442_1208712_-,NA|61aa|down_3|NZ_CP009480.1_1212267_1212450_+,NA|35aa|down_4|NZ_CP009480.1_1212559_1212664_+	NA|241aa|up_9|NZ_CP009480.1_1200355_1201078_+	pfam06271, RDD, RDD family	NA|389aa|up_8|NZ_CP009480.1_1201109_1202276_+	PRK07811, PRK07811, cystathionine gamma-synthase; Provisional	NA|165aa|up_7|NZ_CP009480.1_1202346_1202841_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|145aa|up_6|NZ_CP009480.1_1203026_1203461_-	pfam14155, DUF4307, Domain of unknown function (DUF4307)	NA|289aa|up_5|NZ_CP009480.1_1203562_1204429_+	TIGR03446, mycothiol_Mca, mycothiol conjugate amidase Mca	NA|89aa|up_4|NZ_CP009480.1_1204425_1204692_+	NA	NA|674aa|up_3|NZ_CP009480.1_1204678_1206700_+	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_2|NZ_CP009480.1_1206798_1207527_-	TIGR01065, Hypothetical_UPF0073_protein_yqfA	NA|263aa|up_1|NZ_CP009480.1_1207637_1208426_+	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional	NA|90aa|up_0|NZ_CP009480.1_1208442_1208712_-	NA	NA|107aa|down_0|NZ_CP009480.1_1211082_1211403_+	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|145aa|down_1|NZ_CP009480.1_1211555_1211990_+	pfam00934, PE, PE family	NA|63aa|down_2|NZ_CP009480.1_1212067_1212256_+	smart00637, CBD_II, CBD_II domain	NA|61aa|down_3|NZ_CP009480.1_1212267_1212450_+	NA	NA|35aa|down_4|NZ_CP009480.1_1212559_1212664_+	NA	NA|152aa|down_5|NZ_CP009480.1_1212641_1213097_+	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12	NA|313aa|down_6|NZ_CP009480.1_1215868_1216807_-	PRK05439, PRK05439, pantothenate kinase; Provisional	NA|427aa|down_7|NZ_CP009480.1_1217194_1218475_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|276aa|down_8|NZ_CP009480.1_1218579_1219407_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|434aa|down_9|NZ_CP009480.1_1219617_1220919_+	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General    function prediction only]
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	9	1632821-1633009	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCGCCGGCCCCGCCGGC	18	1	14	1632920-1632937|1632920-1632937|1632920-1632937|1632920-1632937|1632920-1632937|1632920-1632937|1632920-1632937|1632920-1632937|1632920-1632937|1632920-1632937|1632920-1632937|1632920-1632937|1632920-1632937|1632920-1632937	NZ_CP009480.1_336585-336602|NZ_CP009480.1_362745-362728|NZ_CP009480.1_672166-672183|NZ_CP009480.1_672727-672744|NZ_CP009480.1_674348-674365|NZ_CP009480.1_838773-838790|NZ_CP009480.1_966478-966495|NZ_CP009480.1_1381785-1381802|NZ_CP009480.1_1628668-1628685|NZ_CP009480.1_2418590-2418607|NZ_CP009480.1_3048261-3048244|NZ_CP009480.1_3156981-3156964|NZ_CP009480.1_3929104-3929087|NZ_CP009480.1_3929419-3929402	NA	4	4	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|80aa|up_9|NZ_CP009480.1_1619201_1619441_+,NA|38aa|up_8|NZ_CP009480.1_1619557_1619671_-,NA|137aa|up_7|NZ_CP009480.1_1619720_1620131_-,NA|288aa|down_2|NZ_CP009480.1_1636198_1637062_+	NA|80aa|up_9|NZ_CP009480.1_1619201_1619441_+	NA	NA|38aa|up_8|NZ_CP009480.1_1619557_1619671_-	NA	NA|137aa|up_7|NZ_CP009480.1_1619720_1620131_-	NA	NA|248aa|up_6|NZ_CP009480.1_1620147_1620891_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP009480.1_1620887_1621799_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP009480.1_1621851_1623396_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP009480.1_1623392_1624514_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP009480.1_1624530_1626633_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|253aa|up_1|NZ_CP009480.1_1626885_1627644_+	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|309aa|up_0|NZ_CP009480.1_1630948_1631875_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP009480.1_1633899_1635165_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP009480.1_1635192_1636179_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP009480.1_1636198_1637062_+	NA	NA|311aa|down_3|NZ_CP009480.1_1637011_1637944_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP009480.1_1638055_1638841_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP009480.1_1638837_1639779_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP009480.1_1639881_1641657_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP009480.1_1641704_1642511_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP009480.1_1642507_1645048_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP009480.1_1645044_1646238_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	10	2041043-2041116	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCGCCCCCCCCCCCCCCGCCCCC	23	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|64aa|up_4|NZ_CP009480.1_2034473_2034665_+,NA|129aa|up_2|NZ_CP009480.1_2036685_2037072_-,NA|116aa|down_1|NZ_CP009480.1_2043001_2043349_-	NA|301aa|up_9|NZ_CP009480.1_2026380_2027283_+	pfam14011, ESX-1_EspG, EspG family	NA|504aa|up_8|NZ_CP009480.1_2027554_2029066_+	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|586aa|up_7|NZ_CP009480.1_2029043_2030801_+	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|407aa|up_6|NZ_CP009480.1_2030797_2032018_+	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|611aa|up_5|NZ_CP009480.1_2032014_2033847_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|64aa|up_4|NZ_CP009480.1_2034473_2034665_+	NA	NA|656aa|up_3|NZ_CP009480.1_2034767_2036735_+	pfam08237, PE-PPE, PE-PPE domain	NA|129aa|up_2|NZ_CP009480.1_2036685_2037072_-	NA	NA|424aa|up_1|NZ_CP009480.1_2037315_2038587_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|464aa|up_0|NZ_CP009480.1_2038698_2040090_+	pfam00823, PPE, PPE family	NA|109aa|down_0|NZ_CP009480.1_2042337_2042664_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|116aa|down_1|NZ_CP009480.1_2043001_2043349_-	NA	NA|100aa|down_2|NZ_CP009480.1_2043386_2043686_+	pfam00934, PE, PE family	NA|404aa|down_3|NZ_CP009480.1_2043700_2044912_+	pfam00823, PPE, PPE family	NA|410aa|down_4|NZ_CP009480.1_2045235_2046465_+	pfam00823, PPE, PPE family	NA|469aa|down_5|NZ_CP009480.1_2046596_2048003_+	pfam00823, PPE, PPE family	NA|119aa|down_6|NZ_CP009480.1_2048247_2048604_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|235aa|down_7|NZ_CP009480.1_2048757_2049462_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|401aa|down_8|NZ_CP009480.1_2049471_2050674_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|144aa|down_9|NZ_CP009480.1_2050995_2051427_-	pfam13827, DUF4189, Domain of unknown function (DUF4189)
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	11	2083590-2083844	2	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2083671-2083688|2083671-2083688|2083761-2083778	NZ_CP009480.1_400799-400782|NZ_CP009480.1_607161-607144|NZ_CP009480.1_3443360-3443343	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|67aa|up_3|NZ_CP009480.1_2079859_2080060_+,NA|88aa|up_0|NZ_CP009480.1_2082949_2083213_-,NA	NA|226aa|up_9|NZ_CP009480.1_2070141_2070819_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_8|NZ_CP009480.1_2071177_2074003_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_7|NZ_CP009480.1_2074229_2075090_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_6|NZ_CP009480.1_2075130_2075997_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_5|NZ_CP009480.1_2076001_2077888_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_4|NZ_CP009480.1_2077903_2079937_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|67aa|up_3|NZ_CP009480.1_2079859_2080060_+	NA	NA|742aa|up_2|NZ_CP009480.1_2080056_2082282_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP009480.1_2082557_2082953_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP009480.1_2082949_2083213_-	NA	NA|346aa|down_0|NZ_CP009480.1_2084981_2086019_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP009480.1_2086018_2087386_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|479aa|down_2|NZ_CP009480.1_2087559_2088996_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|486aa|down_3|NZ_CP009480.1_2089031_2090489_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP009480.1_2090518_2091469_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP009480.1_2091483_2091900_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP009480.1_2092177_2092600_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP009480.1_2092648_2092951_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP009480.1_2092947_2093262_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP009480.1_2093261_2094995_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	12	2164118-2164337	7	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_4|NZ_CP009480.1_2155224_2155632_-,NA|64aa|up_0|NZ_CP009480.1_2162544_2162736_+,NA|127aa|down_5|NZ_CP009480.1_2171853_2172234_-	NA|151aa|up_9|NZ_CP009480.1_2151452_2151905_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_8|NZ_CP009480.1_2152009_2152603_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_7|NZ_CP009480.1_2152685_2153291_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_6|NZ_CP009480.1_2153390_2154395_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_5|NZ_CP009480.1_2154494_2155247_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_4|NZ_CP009480.1_2155224_2155632_-	NA	NA|368aa|up_3|NZ_CP009480.1_2155766_2156870_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_2|NZ_CP009480.1_2156869_2158066_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1460aa|up_1|NZ_CP009480.1_2158235_2162615_-	pfam00823, PPE, PPE family	NA|64aa|up_0|NZ_CP009480.1_2162544_2162736_+	NA	NA|155aa|down_0|NZ_CP009480.1_2166364_2166829_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP009480.1_2166926_2167790_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP009480.1_2167827_2169099_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP009480.1_2169370_2170486_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP009480.1_2170476_2171817_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP009480.1_2171853_2172234_-	NA	NA|621aa|down_6|NZ_CP009480.1_2172390_2174253_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP009480.1_2174260_2174740_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP009480.1_2174976_2175750_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP009480.1_2175753_2176521_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	13	3112381-3113735	4,8,3	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-C,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	17,17,18	18	TypeIII-D,TypeIII-A,TypeIII-C,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_7|NZ_CP009480.1_3106062_3106467_+,NA|64aa|up_6|NZ_CP009480.1_3106463_3106655_+,NA|86aa|up_4|NZ_CP009480.1_3108241_3108499_+,NA|104aa|up_3|NZ_CP009480.1_3108603_3108915_+,NA|203aa|up_2|NZ_CP009480.1_3109334_3109943_+,NA	NA|156aa|up_9|NZ_CP009480.1_3105017_3105485_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_8|NZ_CP009480.1_3105624_3105990_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_7|NZ_CP009480.1_3106062_3106467_+	NA	NA|64aa|up_6|NZ_CP009480.1_3106463_3106655_+	NA	NA|385aa|up_5|NZ_CP009480.1_3106853_3108008_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP009480.1_3108241_3108499_+	NA	NA|104aa|up_3|NZ_CP009480.1_3108603_3108915_+	NA	NA|203aa|up_2|NZ_CP009480.1_3109334_3109943_+	NA	NA|470aa|up_1|NZ_CP009480.1_3110013_3111423_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP009480.1_3111419_3112232_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	cas2|114aa|down_0|NZ_CP009480.1_3116820_3117162_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP009480.1_3117162_3118179_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP009480.1_3118191_3119340_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP009480.1_3119435_3120563_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP009480.1_3120559_3121468_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP009480.1_3121448_3122159_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP009480.1_3122168_3122543_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_7|NZ_CP009480.1_3122539_3124969_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|NZ_CP009480.1_3124965_3125910_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP009480.1_3126087_3126633_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	14	3115058-3116772	9,4,5,6	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-D,Type III-A,Type III-C,Type III-B	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A:II-B,III-A	23,23,20,20	23	TypeIII-D,TypeIII-A,TypeIII-C,TypeIII-B	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|135aa|up_7|NZ_CP009480.1_3106062_3106467_+,NA|64aa|up_6|NZ_CP009480.1_3106463_3106655_+,NA|86aa|up_4|NZ_CP009480.1_3108241_3108499_+,NA|104aa|up_3|NZ_CP009480.1_3108603_3108915_+,NA|203aa|up_2|NZ_CP009480.1_3109334_3109943_+,NA	NA|156aa|up_9|NZ_CP009480.1_3105017_3105485_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_8|NZ_CP009480.1_3105624_3105990_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|135aa|up_7|NZ_CP009480.1_3106062_3106467_+	NA	NA|64aa|up_6|NZ_CP009480.1_3106463_3106655_+	NA	NA|385aa|up_5|NZ_CP009480.1_3106853_3108008_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP009480.1_3108241_3108499_+	NA	NA|104aa|up_3|NZ_CP009480.1_3108603_3108915_+	NA	NA|203aa|up_2|NZ_CP009480.1_3109334_3109943_+	NA	NA|470aa|up_1|NZ_CP009480.1_3110013_3111423_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP009480.1_3111419_3112232_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	cas2|114aa|down_0|NZ_CP009480.1_3116820_3117162_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP009480.1_3117162_3118179_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP009480.1_3118191_3119340_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP009480.1_3119435_3120563_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP009480.1_3120559_3121468_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP009480.1_3121448_3122159_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP009480.1_3122168_3122543_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|810aa|down_7|NZ_CP009480.1_3122539_3124969_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|315aa|down_8|NZ_CP009480.1_3124965_3125910_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP009480.1_3126087_3126633_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	15	3734004-3734545	5	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTNCCNCCGTTGCCGCC	23	0	0	NA	NA	NA	7	7	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|164aa|down_2|NZ_CP009480.1_3746477_3746969_-,NA|79aa|down_5|NZ_CP009480.1_3748583_3748820_-	NA|147aa|up_9|NZ_CP009480.1_3714575_3715016_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_8|NZ_CP009480.1_3715049_3715919_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_7|NZ_CP009480.1_3715939_3716950_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|211aa|up_6|NZ_CP009480.1_3717234_3717867_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_5|NZ_CP009480.1_3717933_3719163_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_4|NZ_CP009480.1_3719445_3720795_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_3|NZ_CP009480.1_3720806_3721946_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_2|NZ_CP009480.1_3721942_3722674_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2524aa|up_1|NZ_CP009480.1_3722682_3730254_-	pfam00823, PPE, PPE family	NA|339aa|up_0|NZ_CP009480.1_3730302_3731319_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|86aa|down_0|NZ_CP009480.1_3736453_3736711_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP009480.1_3736966_3746440_-	pfam00823, PPE, PPE family	NA|164aa|down_2|NZ_CP009480.1_3746477_3746969_-	NA	NA|164aa|down_3|NZ_CP009480.1_3747020_3747512_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_4|NZ_CP009480.1_3747548_3748289_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|79aa|down_5|NZ_CP009480.1_3748583_3748820_-	NA	NA|3717aa|down_6|NZ_CP009480.1_3749207_3760358_-	pfam00823, PPE, PPE family	NA|265aa|down_7|NZ_CP009480.1_3760601_3761396_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_8|NZ_CP009480.1_3761477_3761849_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|137aa|down_9|NZ_CP009480.1_3761746_3762157_-	pfam01565, FAD_binding_4, FAD binding domain
GCF_000831245.1_ASM83124v1	NZ_CP009480	Mycobacterium tuberculosis H37Rv, complete genome	16	4103087-4103175	10	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|65aa|up_9|NZ_CP009480.1_4091778_4091973_+,NA|257aa|up_7|NZ_CP009480.1_4093673_4094444_-,NA|90aa|up_2|NZ_CP009480.1_4099665_4099935_+,NA|233aa|up_0|NZ_CP009480.1_4102191_4102890_-,NA|126aa|down_6|NZ_CP009480.1_4108410_4108788_+	NA|65aa|up_9|NZ_CP009480.1_4091778_4091973_+	NA	NA|288aa|up_8|NZ_CP009480.1_4092055_4092919_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_7|NZ_CP009480.1_4093673_4094444_-	NA	NA|549aa|up_6|NZ_CP009480.1_4094440_4096087_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|267aa|up_5|NZ_CP009480.1_4096083_4096884_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_4|NZ_CP009480.1_4096939_4097866_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_3|NZ_CP009480.1_4097867_4099493_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|90aa|up_2|NZ_CP009480.1_4099665_4099935_+	NA	NA|652aa|up_1|NZ_CP009480.1_4100200_4102156_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP009480.1_4102191_4102890_-	NA	NA|173aa|down_0|NZ_CP009480.1_4103235_4103754_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP009480.1_4103754_4104738_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP009480.1_4104730_4105924_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP009480.1_4105929_4106751_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP009480.1_4106882_4107566_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP009480.1_4107565_4108303_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP009480.1_4108410_4108788_+	NA	NA|225aa|down_7|NZ_CP009480.1_4108886_4109561_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP009480.1_4109666_4110461_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP009480.1_4110467_4110923_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
