assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000829395.1_ASM82939v1	NZ_AP014680	Lactobacillus hokkaidonensis JCM 18461 strain LOOC260	1	226394-226542	1	CRISPRCasFinder	no		PrimPol,WYL,cas3,DinG,DEDDh,csa3	Orphan	AATTGATAAGTTCGCATTTTGAACTTATTGATTGCCGTTATTGTTTTAG	49	0	0	NA	NA	NA	1	1	Orphan	PrimPol,WYL,cas3,DinG,DEDDh,csa3	NA|48aa|up_7|NZ_AP014680.1_214514_214658_-,NA|186aa|down_7|NZ_AP014680.1_232850_233408_+,NA|79aa|down_8|NZ_AP014680.1_233457_233694_+,NA|138aa|down_9|NZ_AP014680.1_233705_234119_+	NA|363aa|up_9|NZ_AP014680.1_211618_212707_+	PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed	NA|455aa|up_8|NZ_AP014680.1_212888_214253_+	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|48aa|up_7|NZ_AP014680.1_214514_214658_-	NA	NA|601aa|up_6|NZ_AP014680.1_215201_217004_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|346aa|up_5|NZ_AP014680.1_217465_218503_+	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller	NA|399aa|up_4|NZ_AP014680.1_219297_220494_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|276aa|up_3|NZ_AP014680.1_220803_221631_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|455aa|up_2|NZ_AP014680.1_222144_223509_+	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|420aa|up_1|NZ_AP014680.1_223984_225244_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|307aa|up_0|NZ_AP014680.1_225358_226279_+	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|242aa|down_0|NZ_AP014680.1_226856_227582_+	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|289aa|down_1|NZ_AP014680.1_227736_228603_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|256aa|down_2|NZ_AP014680.1_228620_229388_+	pfam13614, AAA_31, AAA domain	NA|294aa|down_3|NZ_AP014680.1_229377_230259_+	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|64aa|down_4|NZ_AP014680.1_230303_230495_+	pfam06107, DUF951, Bacterial protein of unknown function (DUF951)	NA|367aa|down_5|NZ_AP014680.1_230809_231910_+	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|257aa|down_6|NZ_AP014680.1_231939_232710_+	pfam06570, DUF1129, Protein of unknown function (DUF1129)	NA|186aa|down_7|NZ_AP014680.1_232850_233408_+	NA	NA|79aa|down_8|NZ_AP014680.1_233457_233694_+	NA	NA|138aa|down_9|NZ_AP014680.1_233705_234119_+	NA
GCF_000829395.1_ASM82939v1	NZ_AP014680	Lactobacillus hokkaidonensis JCM 18461 strain LOOC260	2	496459-496576	2	CRISPRCasFinder	no		PrimPol,WYL,cas3,DinG,DEDDh,csa3	Orphan	ATTTACCATGTAAGGGTCATTATTTTGTTA	30	0	0	NA	NA	NA	1	1	Orphan	PrimPol,WYL,cas3,DinG,DEDDh,csa3	NA,NA|165aa|down_8|NZ_AP014680.1_505148_505643_+	NA|130aa|up_9|NZ_AP014680.1_489253_489643_-	PRK14231, PRK14231, fluoride efflux transporter CrcB	NA|174aa|up_8|NZ_AP014680.1_489802_490324_+	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|284aa|up_7|NZ_AP014680.1_490332_491184_+	pfam11311, DUF3114, Protein of unknown function (DUF3114)	NA|117aa|up_6|NZ_AP014680.1_491240_491591_-	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis	NA|283aa|up_5|NZ_AP014680.1_491734_492583_+	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|256aa|up_4|NZ_AP014680.1_492824_493592_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|323aa|up_3|NZ_AP014680.1_493642_494611_+	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|295aa|up_2|NZ_AP014680.1_494607_495492_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|184aa|up_1|NZ_AP014680.1_495542_496094_+	pfam08002, DUF1697, Protein of unknown function (DUF1697)	NA|109aa|up_0|NZ_AP014680.1_496093_496420_+	cd11543, NTP-PPase_u6, Nucleoside Triphosphate Pyrophosphohydrolase EC 3	NA|396aa|down_0|NZ_AP014680.1_496855_498043_+	cd06347, PBP1_ABC_LivK_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|293aa|down_1|NZ_AP014680.1_498444_499323_+	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism]	NA|321aa|down_2|NZ_AP014680.1_499332_500295_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|259aa|down_3|NZ_AP014680.1_500297_501074_+	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|237aa|down_4|NZ_AP014680.1_501070_501781_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|207aa|down_5|NZ_AP014680.1_501786_502407_+	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain	NA|476aa|down_6|NZ_AP014680.1_502787_504215_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|185aa|down_7|NZ_AP014680.1_504428_504983_+	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle	NA|165aa|down_8|NZ_AP014680.1_505148_505643_+	NA	NA|175aa|down_9|NZ_AP014680.1_506247_506772_-	PRK06481, PRK06481, flavocytochrome c
GCF_000829395.1_ASM82939v1	NZ_AP014680	Lactobacillus hokkaidonensis JCM 18461 strain LOOC260	3	652228-652323	3	CRISPRCasFinder	no	cas3	PrimPol,WYL,cas3,DinG,DEDDh,csa3	Unclear	CGTGTTTTTTCAACCAGTCTTCTAGGGC	28	0	0	NA	NA	NA	1	1	Unclear	PrimPol,WYL,cas3,DinG,DEDDh,csa3	NA,NA|153aa|down_2|NZ_AP014680.1_654488_654947_+	NA|490aa|up_9|NZ_AP014680.1_640831_642301_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|476aa|up_8|NZ_AP014680.1_642300_643728_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|341aa|up_7|NZ_AP014680.1_643750_644773_+	PRK13055, PRK13055, putative lipid kinase; Reviewed	NA|455aa|up_6|NZ_AP014680.1_645112_646477_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|99aa|up_5|NZ_AP014680.1_646677_646974_+	pfam15723, MqsR_toxin, Motility quorum-sensing regulator, toxin of MqsA	NA|310aa|up_4|NZ_AP014680.1_646987_647917_+	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|471aa|up_3|NZ_AP014680.1_648310_649723_-	pfam05598, DUF772, Transposase domain (DUF772)	NA|212aa|up_2|NZ_AP014680.1_649835_650471_-	PRK06182, PRK06182, short chain dehydrogenase; Validated	NA|178aa|up_1|NZ_AP014680.1_650598_651132_+	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region	NA|294aa|up_0|NZ_AP014680.1_651235_652117_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|492aa|down_0|NZ_AP014680.1_652430_653906_+	pfam01977, UbiD, 3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA|199aa|down_1|NZ_AP014680.1_653920_654517_+	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism]	NA|153aa|down_2|NZ_AP014680.1_654488_654947_+	NA	NA|499aa|down_3|NZ_AP014680.1_655102_656599_+	PRK02471, PRK02471, bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB	NA|452aa|down_4|NZ_AP014680.1_656656_658012_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|514aa|down_5|NZ_AP014680.1_658731_660273_-	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|279aa|down_6|NZ_AP014680.1_660528_661365_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|260aa|down_7|NZ_AP014680.1_661666_662446_+	cd06419, GH25_muramidase_2, Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain	NA|121aa|down_8|NZ_AP014680.1_662494_662857_-	pfam16110, DUF4828, Domain of unknown function (DUF4828)	NA|334aa|down_9|NZ_AP014680.1_663014_664016_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]
GCF_000829395.1_ASM82939v1	NZ_AP014680	Lactobacillus hokkaidonensis JCM 18461 strain LOOC260	4	672138-672276	4	CRISPRCasFinder	no	cas3	PrimPol,WYL,cas3,DinG,DEDDh,csa3	Unclear	GTCGAATTTTGACCATCATGAACGTTATTTTGTTGTTACACGTAG	45	0	0	NA	NA	NA	1	1	Unclear	PrimPol,WYL,cas3,DinG,DEDDh,csa3	NA|173aa|up_1|NZ_AP014680.1_670554_671073_-,NA|69aa|down_2|NZ_AP014680.1_673702_673909_-	NA|131aa|up_9|NZ_AP014680.1_665597_665990_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|63aa|up_8|NZ_AP014680.1_666027_666216_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|124aa|up_7|NZ_AP014680.1_666683_667055_-	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|375aa|up_6|NZ_AP014680.1_667361_668486_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|122aa|up_5|NZ_AP014680.1_668682_669048_+	pfam05973, Gp49, Phage derived protein Gp49-like (DUF891)	NA|97aa|up_4|NZ_AP014680.1_669040_669331_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|135aa|up_3|NZ_AP014680.1_669429_669834_-	pfam04138, GtrA, GtrA-like protein	NA|152aa|up_2|NZ_AP014680.1_669846_670302_-	PRK07308, PRK07308, flavodoxin; Validated	NA|173aa|up_1|NZ_AP014680.1_670554_671073_-	NA	NA|262aa|up_0|NZ_AP014680.1_671286_672072_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|299aa|down_0|NZ_AP014680.1_672501_673398_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|81aa|down_1|NZ_AP014680.1_673432_673675_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|69aa|down_2|NZ_AP014680.1_673702_673909_-	NA	NA|265aa|down_3|NZ_AP014680.1_674073_674868_+	PRK14135, recX, recombination regulator RecX; Provisional	NA|493aa|down_4|NZ_AP014680.1_674981_676460_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|730aa|down_5|NZ_AP014680.1_676724_678914_+	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family	NA|589aa|down_6|NZ_AP014680.1_679090_680857_+	cd06522, GH25_AtlA-like, AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|111aa|down_7|NZ_AP014680.1_680999_681332_-	pfam09726, Macoilin, Macoilin family	NA|587aa|down_8|NZ_AP014680.1_681767_683528_+	pfam10131, PTPS_related, 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein	NA|311aa|down_9|NZ_AP014680.1_683718_684651_+	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1
GCF_000829395.1_ASM82939v1	NZ_AP014680	Lactobacillus hokkaidonensis JCM 18461 strain LOOC260	5	886816-886898	5	CRISPRCasFinder	no		PrimPol,WYL,cas3,DinG,DEDDh,csa3	Orphan	GCCATTGCGGTTCCAGTTGCACTGTTAGG	29	0	0	NA	NA	NA	1	1	Orphan	PrimPol,WYL,cas3,DinG,DEDDh,csa3	NA|35aa|up_5|NZ_AP014680.1_878040_878145_+,NA|216aa|down_3|NZ_AP014680.1_889383_890031_+	NA|560aa|up_9|NZ_AP014680.1_870815_872495_+	PRK08617, PRK08617, acetolactate synthase AlsS	NA|238aa|up_8|NZ_AP014680.1_872590_873304_+	cd17299, acetolactate_decarboxylase, alpha-acetolactate decarboxylase	NA|508aa|up_7|NZ_AP014680.1_874164_875688_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|451aa|up_6|NZ_AP014680.1_875781_877134_+	PRK08593, PRK08593, aspartate aminotransferase family protein	NA|35aa|up_5|NZ_AP014680.1_878040_878145_+	NA	NA|909aa|up_4|NZ_AP014680.1_880253_882980_-	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|247aa|up_3|NZ_AP014680.1_883269_884010_+	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|247aa|up_2|NZ_AP014680.1_884019_884760_+	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|296aa|up_1|NZ_AP014680.1_884824_885712_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|214aa|up_0|NZ_AP014680.1_885750_886392_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|299aa|down_0|NZ_AP014680.1_887360_888257_+	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|140aa|down_1|NZ_AP014680.1_888284_888704_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|161aa|down_2|NZ_AP014680.1_888759_889242_+	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component	NA|216aa|down_3|NZ_AP014680.1_889383_890031_+	NA	NA|838aa|down_4|NZ_AP014680.1_890159_892673_+	COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair]	NA|709aa|down_5|NZ_AP014680.1_892792_894919_+	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family	NA|338aa|down_6|NZ_AP014680.1_895077_896091_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|306aa|down_7|NZ_AP014680.1_896206_897124_+	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|115aa|down_8|NZ_AP014680.1_897200_897545_+	PRK13676, PRK13676, YlbF/YmcA family competence regulator	NA|415aa|down_9|NZ_AP014680.1_897619_898864_+	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain
GCF_000829395.1_ASM82939v1	NZ_AP014680	Lactobacillus hokkaidonensis JCM 18461 strain LOOC260	6	918535-918678	6	CRISPRCasFinder	no		PrimPol,WYL,cas3,DinG,DEDDh,csa3	Orphan	AAAATAACAATCAATAAATCAAGGAACGCTTTATCAATCGTT	42	0	0	NA	NA	NA	1	1	Orphan	PrimPol,WYL,cas3,DinG,DEDDh,csa3	NA|130aa|up_8|NZ_AP014680.1_908872_909262_+,NA	NA|212aa|up_9|NZ_AP014680.1_908203_908839_+	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain	NA|130aa|up_8|NZ_AP014680.1_908872_909262_+	NA	NA|444aa|up_7|NZ_AP014680.1_909287_910619_+	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional	NA|213aa|up_6|NZ_AP014680.1_910782_911421_+	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|889aa|up_5|NZ_AP014680.1_911547_914214_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|279aa|up_4|NZ_AP014680.1_914239_915076_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|200aa|up_3|NZ_AP014680.1_915072_915672_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|158aa|up_2|NZ_AP014680.1_915691_916165_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|456aa|up_1|NZ_AP014680.1_916176_917544_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|311aa|up_0|NZ_AP014680.1_917547_918480_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|169aa|down_0|NZ_AP014680.1_918960_919467_+	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|66aa|down_1|NZ_AP014680.1_919490_919688_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|118aa|down_2|NZ_AP014680.1_919725_920079_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|177aa|down_3|NZ_AP014680.1_920236_920767_+	COG2179, COG2179, Predicted hydrolase of the HAD superfamily [General function prediction only]	NA|375aa|down_4|NZ_AP014680.1_920759_921884_+	PRK13796, PRK13796, GTPase YqeH; Provisional	NA|104aa|down_5|NZ_AP014680.1_921899_922211_+	pfam01985, CRS1_YhbY, CRS1 / YhbY (CRM) domain	NA|212aa|down_6|NZ_AP014680.1_922223_922859_+	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|203aa|down_7|NZ_AP014680.1_922851_923460_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|119aa|down_8|NZ_AP014680.1_923459_923816_+	TIGR00090, rsfS_iojap_ybeB, ribosome silencing factor RsfS/YbeB/iojap	NA|247aa|down_9|NZ_AP014680.1_923812_924553_+	pfam13649, Methyltransf_25, Methyltransferase domain
GCF_000829395.1_ASM82939v1	NZ_AP014680	Lactobacillus hokkaidonensis JCM 18461 strain LOOC260	7	1246913-1247052	7	CRISPRCasFinder	no		PrimPol,WYL,cas3,DinG,DEDDh,csa3	Orphan	AAACGTGTTCAGCCCTGCAGATGTCTAGGGATAATCCCACT	41	0	0	NA	NA	NA	1	1	Orphan	PrimPol,WYL,cas3,DinG,DEDDh,csa3	NA,NA|154aa|down_9|NZ_AP014680.1_1255212_1255674_+	NA|209aa|up_9|NZ_AP014680.1_1237100_1237727_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|458aa|up_8|NZ_AP014680.1_1237757_1239131_-	PRK00701, PRK00701, divalent metal cation transporter MntH	NA|274aa|up_7|NZ_AP014680.1_1239449_1240271_-	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface	NA|242aa|up_6|NZ_AP014680.1_1240474_1241200_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|381aa|up_5|NZ_AP014680.1_1241196_1242339_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|212aa|up_4|NZ_AP014680.1_1242370_1243006_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|213aa|up_3|NZ_AP014680.1_1243062_1243701_-	pfam13599, Pentapeptide_4, Pentapeptide repeats (9 copies)	NA|741aa|up_2|NZ_AP014680.1_1243755_1245978_-	COG3345, GalA, Alpha-galactosidase [Carbohydrate transport and metabolism]	NA|106aa|up_1|NZ_AP014680.1_1246128_1246446_-	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|140aa|up_0|NZ_AP014680.1_1246447_1246867_-	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain	NA|248aa|down_0|NZ_AP014680.1_1247133_1247877_-	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|175aa|down_1|NZ_AP014680.1_1247896_1248421_-	PRK06934, PRK06934, flavodoxin; Provisional	NA|116aa|down_2|NZ_AP014680.1_1248628_1248976_-	pfam04237, YjbR, YjbR	NA|294aa|down_3|NZ_AP014680.1_1249042_1249924_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|190aa|down_4|NZ_AP014680.1_1249953_1250523_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|461aa|down_5|NZ_AP014680.1_1250618_1252001_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|314aa|down_6|NZ_AP014680.1_1252200_1253142_-	COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]	NA|167aa|down_7|NZ_AP014680.1_1253260_1253761_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|442aa|down_8|NZ_AP014680.1_1253840_1255166_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|154aa|down_9|NZ_AP014680.1_1255212_1255674_+	NA
GCF_000829395.1_ASM82939v1	NZ_AP014680	Lactobacillus hokkaidonensis JCM 18461 strain LOOC260	8	1293331-1293447	8	CRISPRCasFinder	no		PrimPol,WYL,cas3,DinG,DEDDh,csa3	Orphan	CCGCAGAAGCTTGCGTGTAACATCAAAATAC	31	0	0	NA	NA	NA	1	1	Orphan	PrimPol,WYL,cas3,DinG,DEDDh,csa3	NA,NA|66aa|down_3|NZ_AP014680.1_1297313_1297511_-,NA|69aa|down_4|NZ_AP014680.1_1297984_1298191_-,NA|125aa|down_8|NZ_AP014680.1_1303401_1303776_+	NA|380aa|up_9|NZ_AP014680.1_1283933_1285073_-	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase	NA|198aa|up_8|NZ_AP014680.1_1285077_1285671_-	cd00515, HAM1, NTPase/HAM1	NA|435aa|up_7|NZ_AP014680.1_1285667_1286972_-	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|190aa|up_6|NZ_AP014680.1_1286934_1287504_-	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|167aa|up_5|NZ_AP014680.1_1287503_1288004_-	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)	NA|124aa|up_4|NZ_AP014680.1_1287996_1288368_-	pfam02152, FolB, Dihydroneopterin aldolase	NA|150aa|up_3|NZ_AP014680.1_1288494_1288944_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|122aa|up_2|NZ_AP014680.1_1289031_1289397_-	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|192aa|up_1|NZ_AP014680.1_1289495_1290071_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|1046aa|up_0|NZ_AP014680.1_1290116_1293254_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|497aa|down_0|NZ_AP014680.1_1293532_1295023_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|455aa|down_1|NZ_AP014680.1_1295277_1296642_+	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|100aa|down_2|NZ_AP014680.1_1296982_1297282_+	pfam01906, YbjQ_1, Putative heavy-metal-binding	NA|66aa|down_3|NZ_AP014680.1_1297313_1297511_-	NA	NA|69aa|down_4|NZ_AP014680.1_1297984_1298191_-	NA	NA|342aa|down_5|NZ_AP014680.1_1298357_1299383_-	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|219aa|down_6|NZ_AP014680.1_1299563_1300220_+	PRK10847, PRK10847, DedA family protein	NA|938aa|down_7|NZ_AP014680.1_1300379_1303193_+	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|125aa|down_8|NZ_AP014680.1_1303401_1303776_+	NA	NA|118aa|down_9|NZ_AP014680.1_1303853_1304207_-	COG5646, COG5646, Uncharacterized conserved protein [Function unknown]
GCF_000829395.1_ASM82939v1	NZ_AP014680	Lactobacillus hokkaidonensis JCM 18461 strain LOOC260	9	1720298-1720432	9	CRISPRCasFinder	no		PrimPol,WYL,cas3,DinG,DEDDh,csa3	Orphan	TTTACTTGCTAAAACGCGCAAAAAGTCGCAAAAGTCTAT	39	0	0	NA	NA	NA	1	1	Orphan	PrimPol,WYL,cas3,DinG,DEDDh,csa3	NA,NA	NA|231aa|up_9|NZ_AP014680.1_1710910_1711603_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|142aa|up_8|NZ_AP014680.1_1711694_1712120_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|183aa|up_7|NZ_AP014680.1_1712262_1712811_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|60aa|up_6|NZ_AP014680.1_1712921_1713101_-	PRK07597, secE, preprotein translocase subunit SecE; Reviewed	NA|51aa|up_5|NZ_AP014680.1_1713120_1713273_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|1116aa|up_4|NZ_AP014680.1_1713549_1716897_+	pfam05031, NEAT, Iron Transport-associated domain	NA|231aa|up_3|NZ_AP014680.1_1716916_1717609_+	cd06920, NEAT, NEAr Transport domain, a component of cell surface proteins	NA|296aa|up_2|NZ_AP014680.1_1717624_1718512_+	TIGR03659, heme_ABC_transporter_heme-binding_protein_isdE, heme ABC transporter, heme-binding protein isdE	NA|321aa|up_1|NZ_AP014680.1_1718526_1719489_+	pfam01032, FecCD, FecCD transport family	NA|253aa|up_0|NZ_AP014680.1_1719478_1720237_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|396aa|down_0|NZ_AP014680.1_1720526_1721714_-	cd06347, PBP1_ABC_LivK_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|158aa|down_1|NZ_AP014680.1_1722098_1722572_-	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|303aa|down_2|NZ_AP014680.1_1722717_1723626_-	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold	NA|283aa|down_3|NZ_AP014680.1_1723628_1724477_-	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]	NA|398aa|down_4|NZ_AP014680.1_1724476_1725670_-	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]	NA|385aa|down_5|NZ_AP014680.1_1726296_1727451_+	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|369aa|down_6|NZ_AP014680.1_1727508_1728615_-	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase	NA|287aa|down_7|NZ_AP014680.1_1728636_1729497_-	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|147aa|down_8|NZ_AP014680.1_1729863_1730304_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|123aa|down_9|NZ_AP014680.1_1730377_1730746_-	COG5646, COG5646, Uncharacterized conserved protein [Function unknown]
GCF_000829395.1_ASM82939v1	NZ_AP014682	Lactobacillus hokkaidonensis JCM 18461 strain LOOC260 plasmid pLOOC260-2, complete sequence	1	425-582	1	CRISPRCasFinder	no			Orphan	AAACCCTTGCTACGAGCGGAAGTTCAAAAAATGAACTT	38	0	0	NA	NA	NA	1	1	Orphan	PrimPol,WYL,cas3,DinG,DEDDh,csa3	NA,NA|66aa|down_0|NZ_AP014682.1_1259_1457_+,NA|54aa|down_2|NZ_AP014682.1_2227_2389_+,NA|93aa|down_3|NZ_AP014682.1_2378_2657_-,NA|76aa|down_4|NZ_AP014682.1_2679_2907_-,NA|104aa|down_6|NZ_AP014682.1_5302_5614_+,NA|205aa|down_7|NZ_AP014682.1_5652_6267_+,NA|121aa|down_9|NZ_AP014682.1_6624_6987_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|66aa|down_0|NZ_AP014682.1_1259_1457_+	NA	NA|240aa|down_1|NZ_AP014682.1_1507_2227_+	pfam02661, Fic, Fic/DOC family	NA|54aa|down_2|NZ_AP014682.1_2227_2389_+	NA	NA|93aa|down_3|NZ_AP014682.1_2378_2657_-	NA	NA|76aa|down_4|NZ_AP014682.1_2679_2907_-	NA	NA|687aa|down_5|NZ_AP014682.1_3157_5218_+	pfam03389, MobA_MobL, MobA/MobL family	NA|104aa|down_6|NZ_AP014682.1_5302_5614_+	NA	NA|205aa|down_7|NZ_AP014682.1_5652_6267_+	NA	NA|112aa|down_8|NZ_AP014682.1_6268_6604_+	pfam16943, T4SS_CagC, Cag pathogenicity island, type IV secretory system	NA|121aa|down_9|NZ_AP014682.1_6624_6987_+	NA
