assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000829175.1_ASM82917v1	NZ_AP014582	Bordetella bronchiseptica strain S798	1	484698-484799	1	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	CTGCGGCCAGGGAGCCTGTCCCCGC	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|287aa|up_9|NZ_AP014582.1_464801_465662_+	cd03401, SPFH_prohibitin, Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|112aa|up_8|NZ_AP014582.1_465737_466073_-	pfam07411, DUF1508, Domain of unknown function (DUF1508)	NA|382aa|up_7|NZ_AP014582.1_466213_467359_-	cd06812, PLPDE_III_DSD_D-TA_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 1	NA|220aa|up_6|NZ_AP014582.1_467385_468045_-	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase	NA|303aa|up_5|NZ_AP014582.1_468136_469045_+	cd08479, PBP2_CrgA_like_9, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|61aa|up_4|NZ_AP014582.1_469041_469224_+	pfam12167, Arm-DNA-bind_2, Arm DNA-binding domain	NA|2243aa|up_3|NZ_AP014582.1_469537_476266_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|44aa|up_2|NZ_AP014582.1_476543_476675_+	COG5510, COG5510, Predicted small secreted protein [Function unknown]	NA|2300aa|up_1|NZ_AP014582.1_477121_484021_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|194aa|up_0|NZ_AP014582.1_484072_484654_+	cd20298, cupin_UAH, ureidoglycolate amidohydrolase (UAH) and related proteins, cupin domain	NA|326aa|down_0|NZ_AP014582.1_485080_486058_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|518aa|down_1|NZ_AP014582.1_486092_487646_+	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|247aa|down_2|NZ_AP014582.1_487653_488394_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|255aa|down_3|NZ_AP014582.1_488417_489182_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|112aa|down_4|NZ_AP014582.1_489226_489562_+	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown]	NA|327aa|down_5|NZ_AP014582.1_489615_490596_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|185aa|down_6|NZ_AP014582.1_490695_491250_+	cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases	NA|418aa|down_7|NZ_AP014582.1_491341_492595_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|321aa|down_8|NZ_AP014582.1_492572_493535_-	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|159aa|down_9|NZ_AP014582.1_493687_494164_+	cd03451, FkbR2, FkbR2 is a Streptomyces hygroscopicus protein with a hot dog fold that belongs to a conserved family of proteins found in prokaryotes and archaea but not in eukaryotes
GCF_000829175.1_ASM82917v1	NZ_AP014582	Bordetella bronchiseptica strain S798	2	1001861-1001945	2	CRISPRCasFinder	no	csa3	csa3,DEDDh,DinG,cas3	Type I-A	GGTGCCTGTCCCCGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|169aa|up_9|NZ_AP014582.1_991982_992489_-	cd08896, SRPBCC_CalC_Aha1-like_3, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	csa3|113aa|up_8|NZ_AP014582.1_992485_992824_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|840aa|up_7|NZ_AP014582.1_993252_995772_+	PRK10833, PRK10833, putative assembly protein; Provisional	NA|129aa|up_6|NZ_AP014582.1_995768_996155_+	pfam03476, MOSC_N, MOSC N-terminal beta barrel domain	NA|406aa|up_5|NZ_AP014582.1_996162_997380_-	pfam03594, BenE, Benzoate membrane transport protein	NA|84aa|up_4|NZ_AP014582.1_997376_997628_-	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein	NA|170aa|up_3|NZ_AP014582.1_997682_998192_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|207aa|up_2|NZ_AP014582.1_998212_998833_-	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|400aa|up_1|NZ_AP014582.1_998908_1000108_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|533aa|up_0|NZ_AP014582.1_1000154_1001753_-	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain	NA|274aa|down_0|NZ_AP014582.1_1001991_1002813_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|290aa|down_1|NZ_AP014582.1_1002809_1003679_-	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|257aa|down_2|NZ_AP014582.1_1003696_1004467_-	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system	NA|336aa|down_3|NZ_AP014582.1_1004469_1005477_-	cd13573, PBP2_PnhD_3, Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold	NA|276aa|down_4|NZ_AP014582.1_1005625_1006453_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|266aa|down_5|NZ_AP014582.1_1006458_1007256_-	TIGR01484, Putative_mannosyl-3-phosphoglycerate_phosphatase, HAD-superfamily hydrolase, subfamily IIB	NA|392aa|down_6|NZ_AP014582.1_1007401_1008577_+	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|176aa|down_7|NZ_AP014582.1_1008590_1009118_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|155aa|down_8|NZ_AP014582.1_1009125_1009590_+	PRK00202, nusB, transcription antitermination factor NusB	NA|339aa|down_9|NZ_AP014582.1_1009629_1010646_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional
GCF_000829175.1_ASM82917v1	NZ_AP014582	Bordetella bronchiseptica strain S798	3	2172780-2172895	3	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	TTTTTTTGCCGCCGGGCCGCCCCAAGGCAAAAA	33	1	8	2172813-2172862|2172813-2172862|2172813-2172862|2172813-2172862|2172813-2172862|2172813-2172862|2172813-2172862|2172813-2172862	NZ_AP014582.1_1481416-1481367|NZ_AP014582.1_2330030-2330079|NZ_AP014582.1_2330113-2330162|NZ_AP014582.1_2330196-2330245|NZ_AP014582.1_2330279-2330328|NZ_AP014582.1_2330362-2330411|NZ_AP014582.1_1436784-1436833|NZ_AP014582.1_1436867-1436916	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA|88aa|down_0|NZ_AP014582.1_2173091_2173355_+,NA|439aa|down_1|NZ_AP014582.1_2173351_2174668_+,NA|208aa|down_2|NZ_AP014582.1_2174664_2175288_+	NA|294aa|up_9|NZ_AP014582.1_2163696_2164578_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|232aa|up_8|NZ_AP014582.1_2164853_2165549_+	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|240aa|up_7|NZ_AP014582.1_2165707_2166427_+	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family	NA|315aa|up_6|NZ_AP014582.1_2166545_2167490_+	PRK00072, hemC, porphobilinogen deaminase; Reviewed	NA|263aa|up_5|NZ_AP014582.1_2167522_2168311_+	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme	NA|395aa|up_4|NZ_AP014582.1_2168348_2169533_+	PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed	NA|532aa|up_3|NZ_AP014582.1_2169536_2171132_+	TIGR00540, TPR_hemY_coli, heme biosynthesis-associated TPR protein	NA|179aa|up_2|NZ_AP014582.1_2171160_2171697_+	PRK01250, PRK01250, inorganic diphosphatase	NA|232aa|up_1|NZ_AP014582.1_2171880_2172576_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|44aa|up_0|NZ_AP014582.1_2172602_2172734_+	COG5510, COG5510, Predicted small secreted protein [Function unknown]	NA|88aa|down_0|NZ_AP014582.1_2173091_2173355_+	NA	NA|439aa|down_1|NZ_AP014582.1_2173351_2174668_+	NA	NA|208aa|down_2|NZ_AP014582.1_2174664_2175288_+	NA	NA|219aa|down_3|NZ_AP014582.1_2175284_2175941_+	PRK14852, PRK14852, hypothetical protein; Provisional	NA|282aa|down_4|NZ_AP014582.1_2175937_2176783_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|471aa|down_5|NZ_AP014582.1_2176779_2178192_+	pfam00263, Secretin, Bacterial type II and III secretion system protein	NA|539aa|down_6|NZ_AP014582.1_2178188_2179805_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|282aa|down_7|NZ_AP014582.1_2179801_2180647_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|299aa|down_8|NZ_AP014582.1_2180657_2181554_+	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|236aa|down_9|NZ_AP014582.1_2181553_2182261_+	pfam02643, DUF192, Uncharacterized ACR, COG1430
GCF_000829175.1_ASM82917v1	NZ_AP014582	Bordetella bronchiseptica strain S798	4	2296773-2296900	4	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	CTCGGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCGTGGGGGC	43	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|268aa|up_9|NZ_AP014582.1_2287168_2287972_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|144aa|up_8|NZ_AP014582.1_2287968_2288400_+	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|386aa|up_7|NZ_AP014582.1_2288396_2289554_+	PRK06158, PRK06158, thiolase; Provisional	NA|259aa|up_6|NZ_AP014582.1_2289575_2290352_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|386aa|up_5|NZ_AP014582.1_2290354_2291512_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|332aa|up_4|NZ_AP014582.1_2291533_2292529_+	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|223aa|up_3|NZ_AP014582.1_2292573_2293242_+	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit	NA|214aa|up_2|NZ_AP014582.1_2293234_2293876_+	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|321aa|up_1|NZ_AP014582.1_2293910_2294873_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|515aa|up_0|NZ_AP014582.1_2295142_2296687_+	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|217aa|down_0|NZ_AP014582.1_2296916_2297567_-	PRK00215, PRK00215, transcriptional repressor LexA	NA|401aa|down_1|NZ_AP014582.1_2297695_2298898_-	PRK09257, PRK09257, aromatic amino acid transaminase	NA|676aa|down_2|NZ_AP014582.1_2298975_2301003_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|164aa|down_3|NZ_AP014582.1_2301264_2301756_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|171aa|down_4|NZ_AP014582.1_2301971_2302484_+	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR	NA|404aa|down_5|NZ_AP014582.1_2302501_2303713_+	PRK14012, PRK14012, IscS subfamily cysteine desulfurase	NA|137aa|down_6|NZ_AP014582.1_2303746_2304157_+	PRK11325, PRK11325, scaffold protein; Provisional	NA|108aa|down_7|NZ_AP014582.1_2304158_2304482_+	TIGR02011, Protein_yfhF	NA|171aa|down_8|NZ_AP014582.1_2304484_2304997_+	PRK03578, hscB, Fe-S protein assembly co-chaperone HscB	NA|621aa|down_9|NZ_AP014582.1_2305126_2306989_+	PRK05183, hscA, chaperone protein HscA; Provisional
GCF_000829175.1_ASM82917v1	NZ_AP014582	Bordetella bronchiseptica strain S798	5	3074009-3074170	5	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	CGGGGCGGAAGCGGCTGAGCCGTTTCGACCTTCGGCCGCGGCACGACTTCCACC	54	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|164aa|up_9|NZ_AP014582.1_3061045_3061537_+	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|433aa|up_8|NZ_AP014582.1_3061529_3062828_+	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|325aa|up_7|NZ_AP014582.1_3063091_3064066_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|167aa|up_6|NZ_AP014582.1_3064072_3064573_+	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|434aa|up_5|NZ_AP014582.1_3064565_3065867_+	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|584aa|up_4|NZ_AP014582.1_3065892_3067644_-	pfam03865, ShlB, Haemolysin secretion/activation protein ShlB/FhaC/HecB	NA|377aa|up_3|NZ_AP014582.1_3067636_3068767_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|874aa|up_2|NZ_AP014582.1_3068747_3071369_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|245aa|up_1|NZ_AP014582.1_3071431_3072166_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|202aa|up_0|NZ_AP014582.1_3072415_3073021_-	pfam16970, FimA, Type-1 fimbrial protein, A	NA|210aa|down_0|NZ_AP014582.1_3085002_3085632_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|1239aa|down_1|NZ_AP014582.1_3085640_3089357_+	PRK09959, PRK09959, acid-sensing system histidine kinase EvgS	NA|292aa|down_2|NZ_AP014582.1_3089403_3090279_-	pfam00563, EAL, EAL domain	NA|265aa|down_3|NZ_AP014582.1_3090412_3091207_-	PRK05463, PRK05463, putative hydro-lyase	NA|450aa|down_4|NZ_AP014582.1_3091264_3092614_-	PRK07056, PRK07056, amidase; Provisional	NA|240aa|down_5|NZ_AP014582.1_3092674_3093394_-	pfam11010, DUF2848, Protein of unknown function (DUF2848)	NA|428aa|down_6|NZ_AP014582.1_3093416_3094700_-	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]	NA|207aa|down_7|NZ_AP014582.1_3094696_3095317_-	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component	NA|303aa|down_8|NZ_AP014582.1_3096818_3097727_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|321aa|down_9|NZ_AP014582.1_3097830_3098793_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
GCF_000829175.1_ASM82917v1	NZ_AP014582	Bordetella bronchiseptica strain S798	6	3313259-3313356	6	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GTGCCTGTCCCGGCGGGGACAGGCACCC	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA|120aa|up_2|NZ_AP014582.1_3310409_3310769_-,NA	NA|526aa|up_9|NZ_AP014582.1_3301441_3303019_-	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family	NA|257aa|up_8|NZ_AP014582.1_3303015_3303786_-	cd06911, VirB9_CagX_TrbG, VirB9/CagX/TrbG, a component of the type IV secretion system	NA|452aa|up_7|NZ_AP014582.1_3303963_3305319_-	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]	NA|545aa|up_6|NZ_AP014582.1_3305315_3306950_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|277aa|up_5|NZ_AP014582.1_3306942_3307773_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|315aa|up_4|NZ_AP014582.1_3307790_3308735_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|525aa|up_3|NZ_AP014582.1_3308787_3310362_-	cd08502, PBP2_NikA_DppA_OppA_like_16, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|120aa|up_2|NZ_AP014582.1_3310409_3310769_-	NA	NA|459aa|up_1|NZ_AP014582.1_3310761_3312138_-	pfam07287, AtuA, Acyclic terpene utilisation family protein AtuA	NA|317aa|up_0|NZ_AP014582.1_3312234_3313185_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|446aa|down_0|NZ_AP014582.1_3313455_3314793_-	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA|419aa|down_1|NZ_AP014582.1_3314797_3316054_-	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|349aa|down_2|NZ_AP014582.1_3316249_3317296_-	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated	NA|123aa|down_3|NZ_AP014582.1_3317353_3317722_-	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional	NA|291aa|down_4|NZ_AP014582.1_3317852_3318725_-	COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only]	NA|301aa|down_5|NZ_AP014582.1_3318801_3319704_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|352aa|down_6|NZ_AP014582.1_3319708_3320764_-	TIGR00557, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase	NA|406aa|down_7|NZ_AP014582.1_3320760_3321978_-	pfam07005, DUF1537, Putative sugar-binding N-terminal domain	NA|341aa|down_8|NZ_AP014582.1_3321978_3323001_-	PRK05274, PRK05274, 2-keto-3-deoxygluconate permease; Provisional	NA|309aa|down_9|NZ_AP014582.1_3323250_3324177_-	TIGR02408, putative_L-proline_4-hydroxylase, ectoine hydroxylase
GCF_000829175.1_ASM82917v1	NZ_AP014582	Bordetella bronchiseptica strain S798	7	3453473-3453546	7	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GGCGCCTGTCCCGGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA|241aa|up_0|NZ_AP014582.1_3452618_3453341_-,NA	NA|496aa|up_9|NZ_AP014582.1_3444079_3445567_-	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional	NA|48aa|up_8|NZ_AP014582.1_3445691_3445835_-	pfam03597, FixS, Cytochrome oxidase maturation protein cbb3-type	NA|325aa|up_7|NZ_AP014582.1_3445831_3446806_-	cd02079, P-type_ATPase_HM, P-type heavy metal-transporting ATPase	NA|425aa|up_6|NZ_AP014582.1_3446870_3448145_-	PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional	NA|398aa|up_5|NZ_AP014582.1_3448248_3449442_+	TIGR00858, Putative_8-amino-7-oxononanoate_synthase, 8-amino-7-oxononanoate synthase	NA|218aa|up_4|NZ_AP014582.1_3449438_3450092_+	TIGR01738, Pimeloyl-_methyl_ester_esterase, pimelyl-[acyl-carrier protein] methyl ester esterase	NA|479aa|up_3|NZ_AP014582.1_3450088_3451525_+	pfam13500, AAA_26, AAA domain	NA|120aa|up_2|NZ_AP014582.1_3451512_3451872_+	pfam03788, LrgA, LrgA family	NA|248aa|up_1|NZ_AP014582.1_3451864_3452608_+	pfam04172, LrgB, LrgB-like family	NA|241aa|up_0|NZ_AP014582.1_3452618_3453341_-	NA	NA|441aa|down_0|NZ_AP014582.1_3453696_3455019_-	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|274aa|down_1|NZ_AP014582.1_3455337_3456159_+	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|418aa|down_2|NZ_AP014582.1_3456165_3457419_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|191aa|down_3|NZ_AP014582.1_3457582_3458155_-	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|610aa|down_4|NZ_AP014582.1_3458194_3460024_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|354aa|down_5|NZ_AP014582.1_3459986_3461048_-	PRK05337, PRK05337, beta-hexosaminidase; Provisional	NA|154aa|down_6|NZ_AP014582.1_3461085_3461547_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|249aa|down_7|NZ_AP014582.1_3461631_3462378_-	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|500aa|down_8|NZ_AP014582.1_3462374_3463874_-	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|1077aa|down_9|NZ_AP014582.1_3463870_3467101_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
GCF_000829175.1_ASM82917v1	NZ_AP014582	Bordetella bronchiseptica strain S798	8	4389304-4389397	8	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,DinG,cas3	Unclear	GTGCCTGTCCCCGCCGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|398aa|up_9|NZ_AP014582.1_4377724_4378918_-	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase	NA|343aa|up_8|NZ_AP014582.1_4378983_4380012_-	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain	NA|391aa|up_7|NZ_AP014582.1_4380038_4381211_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|326aa|up_6|NZ_AP014582.1_4381336_4382314_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_5|NZ_AP014582.1_4382324_4383296_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_4|NZ_AP014582.1_4383362_4384148_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|411aa|up_3|NZ_AP014582.1_4384140_4385373_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_2|NZ_AP014582.1_4385568_4386324_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_1|NZ_AP014582.1_4386434_4386953_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|708aa|up_0|NZ_AP014582.1_4386949_4389073_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|157aa|down_0|NZ_AP014582.1_4389483_4389954_-	pfam00582, Usp, Universal stress protein family	NA|115aa|down_1|NZ_AP014582.1_4390042_4390387_-	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|467aa|down_2|NZ_AP014582.1_4390486_4391887_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|305aa|down_3|NZ_AP014582.1_4392075_4392990_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|220aa|down_4|NZ_AP014582.1_4392986_4393646_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|308aa|down_5|NZ_AP014582.1_4393735_4394659_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|152aa|down_6|NZ_AP014582.1_4394664_4395120_-	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|368aa|down_7|NZ_AP014582.1_4395116_4396220_-	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|91aa|down_8|NZ_AP014582.1_4396175_4396448_+	pfam04138, GtrA, GtrA-like protein	NA|540aa|down_9|NZ_AP014582.1_4396407_4398027_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
GCF_000829175.1_ASM82917v1	NZ_AP014582	Bordetella bronchiseptica strain S798	9	4524780-4524860	9	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GTGCCTGTCCCCGCCGGGACAGGC	24	1	1	4524804-4524836	NZ_AP014582.1_3955032-3955000	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|151aa|up_9|NZ_AP014582.1_4510261_4510714_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|1169aa|up_8|NZ_AP014582.1_4510842_4514349_+	PRK13030, PRK13030, indolepyruvate ferredoxin oxidoreductase family protein	NA|976aa|up_7|NZ_AP014582.1_4514654_4517582_+	PRK07207, PRK07207, ribonucleoside-diphosphate reductase subunit alpha	NA|401aa|up_6|NZ_AP014582.1_4517603_4518806_+	PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated	NA|226aa|up_5|NZ_AP014582.1_4519123_4519801_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|192aa|up_4|NZ_AP014582.1_4519939_4520515_+	pfam02325, YGGT, YGGT family	NA|488aa|up_3|NZ_AP014582.1_4520522_4521986_-	cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA) and similar proteins	NA|376aa|up_2|NZ_AP014582.1_4521996_4523124_-	TIGR04091, hypothetical_protein, D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA|376aa|up_1|NZ_AP014582.1_4523253_4524381_-	pfam04914, DltD, DltD protein	NA|80aa|up_0|NZ_AP014582.1_4524406_4524646_-	COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|168aa|down_0|NZ_AP014582.1_4524964_4525468_-	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]	NA|314aa|down_1|NZ_AP014582.1_4525641_4526583_-	cd01942, ribokinase_group_A, Ribokinase-like subgroup A	NA|376aa|down_2|NZ_AP014582.1_4526594_4527722_-	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|308aa|down_3|NZ_AP014582.1_4527747_4528671_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|449aa|down_4|NZ_AP014582.1_4528689_4530036_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|150aa|down_5|NZ_AP014582.1_4530045_4530495_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|145aa|down_6|NZ_AP014582.1_4530584_4531019_-	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|183aa|down_7|NZ_AP014582.1_4531097_4531646_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|457aa|down_8|NZ_AP014582.1_4531728_4533099_+	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|198aa|down_9|NZ_AP014582.1_4533109_4533703_+	COG3150, COG3150, Predicted esterase [General function prediction only]
GCF_000829175.1_ASM82917v1	NZ_AP014582	Bordetella bronchiseptica strain S798	10	4667918-4668001	10	CRISPRCasFinder	no		csa3,DEDDh,DinG,cas3	Orphan	GGTGCCTGTCCCCGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,DinG,cas3	NA,NA	NA|429aa|up_9|NZ_AP014582.1_4659924_4661211_-	pfam00034, Cytochrom_C, Cytochrome c	NA|251aa|up_8|NZ_AP014582.1_4661221_4661974_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|291aa|up_7|NZ_AP014582.1_4662145_4663018_+	PRK05416, PRK05416, RNase adapter RapZ	NA|317aa|up_6|NZ_AP014582.1_4663014_4663965_+	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|191aa|up_5|NZ_AP014582.1_4663961_4664534_-	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|313aa|up_4|NZ_AP014582.1_4664530_4665469_-	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|178aa|up_3|NZ_AP014582.1_4665535_4666069_+	PRK14685, PRK14685, hypothetical protein; Provisional	NA|198aa|up_2|NZ_AP014582.1_4666077_4666671_+	PRK13936, PRK13936, phosphoheptose isomerase; Provisional	NA|248aa|up_1|NZ_AP014582.1_4666667_4667411_+	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|164aa|up_0|NZ_AP014582.1_4667407_4667899_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|263aa|down_0|NZ_AP014582.1_4668055_4668844_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|301aa|down_1|NZ_AP014582.1_4669105_4670008_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|249aa|down_2|NZ_AP014582.1_4670007_4670754_+	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p	NA|192aa|down_3|NZ_AP014582.1_4670803_4671379_+	PRK09480, slmA, division inhibitor protein; Provisional	NA|498aa|down_4|NZ_AP014582.1_4671591_4673085_+	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|352aa|down_5|NZ_AP014582.1_4673095_4674151_+	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase	NA|379aa|down_6|NZ_AP014582.1_4674176_4675313_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|651aa|down_7|NZ_AP014582.1_4675309_4677262_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|188aa|down_8|NZ_AP014582.1_4677275_4677839_-	TIGR03426, shape_MreD, rod shape-determining protein MreD	NA|295aa|down_9|NZ_AP014582.1_4677825_4678710_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional
