assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000829075.1_ASM82907v1	NZ_AP012555	Mycobacterium avium subsp. hominissuis TH135	1	1207867-1207944	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK	Orphan	TGGCCGCCGGCGCGGCGGCCGCCA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK,c2c9_V-U4	NA|82aa|up_7|NZ_AP012555.1_1198897_1199143_-,NA	NA|795aa|up_9|NZ_AP012555.1_1189882_1192267_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|2121aa|up_8|NZ_AP012555.1_1192538_1198901_+	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|82aa|up_7|NZ_AP012555.1_1198897_1199143_-	NA	NA|68aa|up_6|NZ_AP012555.1_1199298_1199502_+	pfam09957, VapB_antitoxin, Bacterial antitoxin of type II TA system, VapB	NA|351aa|up_5|NZ_AP012555.1_1199498_1200551_-	pfam00823, PPE, PPE family	NA|396aa|up_4|NZ_AP012555.1_1200625_1201813_-	pfam00823, PPE, PPE family	NA|231aa|up_3|NZ_AP012555.1_1202624_1203317_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|420aa|up_2|NZ_AP012555.1_1203313_1204573_+	PRK04149, sat, sulfate adenylyltransferase; Reviewed	NA|111aa|up_1|NZ_AP012555.1_1204569_1204902_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|580aa|up_0|NZ_AP012555.1_1204912_1206652_-	PRK05850, PRK05850, acyl-CoA synthetase; Validated	NA|531aa|down_0|NZ_AP012555.1_1208784_1210377_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|547aa|down_1|NZ_AP012555.1_1210461_1212102_+	TIGR01236, D1pyr5carbox1, delta-1-pyrroline-5-carboxylate dehydrogenase, group 1	NA|321aa|down_2|NZ_AP012555.1_1212101_1213064_+	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism]	NA|201aa|down_3|NZ_AP012555.1_1213156_1213759_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|390aa|down_4|NZ_AP012555.1_1213779_1214949_-	PRK07855, PRK07855, lipid-transfer protein; Provisional	NA|154aa|down_5|NZ_AP012555.1_1214945_1215407_-	cd03455, SAV4209, SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|374aa|down_6|NZ_AP012555.1_1215403_1216525_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|135aa|down_7|NZ_AP012555.1_1216532_1216937_-	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|182aa|down_8|NZ_AP012555.1_1216936_1217482_-	pfam13452, MaoC_dehydrat_N, N-terminal half of MaoC dehydratase	NA|399aa|down_9|NZ_AP012555.1_1218689_1219886_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_000829075.1_ASM82907v1	NZ_AP012555	Mycobacterium avium subsp. hominissuis TH135	2	1356447-1356522	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK	Orphan	GCAGGAGGAGTGGCGCTGATGTCT	24	1	1	1356471-1356498	NZ_AP012555.1_2096509-2096482	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK,c2c9_V-U4	NA|97aa|up_8|NZ_AP012555.1_1344884_1345175_-,NA	NA|354aa|up_9|NZ_AP012555.1_1343823_1344885_-	pfam07174, FAP, Fibronectin-attachment protein (FAP)	NA|97aa|up_8|NZ_AP012555.1_1344884_1345175_-	NA	NA|551aa|up_7|NZ_AP012555.1_1345435_1347088_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|473aa|up_6|NZ_AP012555.1_1347084_1348503_+	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase	NA|442aa|up_5|NZ_AP012555.1_1348506_1349832_+	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|361aa|up_4|NZ_AP012555.1_1349828_1350911_+	PRK07409, PRK07409, threonine synthase; Validated	NA|317aa|up_3|NZ_AP012555.1_1350937_1351888_+	COG0083, ThrB, Homoserine kinase [Amino acid transport and metabolism]	NA|629aa|up_2|NZ_AP012555.1_1352155_1354042_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|81aa|up_1|NZ_AP012555.1_1354143_1354386_+	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|358aa|up_0|NZ_AP012555.1_1354482_1355556_+	PRK00591, prfA, peptide chain release factor 1; Validated	NA|408aa|down_0|NZ_AP012555.1_1357202_1358426_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|161aa|down_1|NZ_AP012555.1_1358642_1359125_+	pfam03899, ATP-synt_I, ATP synthase I chain	NA|253aa|down_2|NZ_AP012555.1_1359117_1359876_+	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|83aa|down_3|NZ_AP012555.1_1359960_1360209_+	PRK05880, PRK05880, F0F1 ATP synthase subunit C; Validated	NA|178aa|down_4|NZ_AP012555.1_1360218_1360752_+	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated	NA|447aa|down_5|NZ_AP012555.1_1360759_1362100_+	PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional	NA|555aa|down_6|NZ_AP012555.1_1362167_1363832_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|305aa|down_7|NZ_AP012555.1_1363838_1364753_+	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|486aa|down_8|NZ_AP012555.1_1364781_1366239_+	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|122aa|down_9|NZ_AP012555.1_1366278_1366644_+	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated
GCF_000829075.1_ASM82907v1	NZ_AP012555	Mycobacterium avium subsp. hominissuis TH135	3	2053483-2053573	3	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK	Orphan	CGCGTCCGCGCTGCGCCGCGAAGCGGGGTAGG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK,c2c9_V-U4	NA,NA	NA|109aa|up_9|NZ_AP012555.1_2041150_2041477_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|421aa|up_8|NZ_AP012555.1_2041498_2042761_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_7|NZ_AP012555.1_2042857_2044069_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|497aa|up_6|NZ_AP012555.1_2044242_2045733_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|321aa|up_5|NZ_AP012555.1_2045778_2046741_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|260aa|up_4|NZ_AP012555.1_2046739_2047519_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|up_3|NZ_AP012555.1_2047603_2049571_+	PRK14873, PRK14873, primosomal protein N'	NA|162aa|up_2|NZ_AP012555.1_2049698_2050184_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|276aa|up_1|NZ_AP012555.1_2050189_2051017_-	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|316aa|up_0|NZ_AP012555.1_2051174_2052122_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|236aa|down_0|NZ_AP012555.1_2053614_2054322_+	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated	NA|342aa|down_1|NZ_AP012555.1_2054318_2055344_+	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|519aa|down_2|NZ_AP012555.1_2055340_2056897_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|236aa|down_3|NZ_AP012555.1_2056893_2057601_-	pfam07161, LppX_LprAFG, LppX_LprAFG lipoprotein	NA|200aa|down_4|NZ_AP012555.1_2057719_2058319_+	PRK09289, PRK09289, riboflavin synthase	NA|426aa|down_5|NZ_AP012555.1_2058440_2059718_+	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|161aa|down_6|NZ_AP012555.1_2059767_2060250_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|155aa|down_7|NZ_AP012555.1_2060246_2060711_+	pfam10756, bPH_6, Bacterial PH domain	NA|113aa|down_8|NZ_AP012555.1_2060744_2061083_-	TIGR04529, hypothetical_protein, hemophore-related protein, Rv0203/Rv1174c family	NA|489aa|down_9|NZ_AP012555.1_2061186_2062653_-	pfam00823, PPE, PPE family
GCF_000829075.1_ASM82907v1	NZ_AP012555	Mycobacterium avium subsp. hominissuis TH135	4	2810619-2810717	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK	Orphan	CCGCTCGGGGTCGGGCCGCAACCG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK,c2c9_V-U4	NA,NA	NA|254aa|up_9|NZ_AP012555.1_2800268_2801030_+	PRK06500, PRK06500, SDR family oxidoreductase	NA|186aa|up_8|NZ_AP012555.1_2801077_2801635_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|506aa|up_7|NZ_AP012555.1_2802165_2803683_+	pfam00668, Condensation, Condensation domain	NA|107aa|up_6|NZ_AP012555.1_2803736_2804057_-	pfam00226, DnaJ, DnaJ domain	NA|140aa|up_5|NZ_AP012555.1_2804369_2804789_-	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|127aa|up_4|NZ_AP012555.1_2804901_2805282_+	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|148aa|up_3|NZ_AP012555.1_2805342_2805786_-	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|410aa|up_2|NZ_AP012555.1_2805949_2807179_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|392aa|up_1|NZ_AP012555.1_2807175_2808351_-	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|492aa|up_0|NZ_AP012555.1_2808347_2809823_-	PRK06524, PRK06524, biotin carboxylase-like protein; Validated	NA|104aa|down_0|NZ_AP012555.1_2810862_2811174_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|134aa|down_1|NZ_AP012555.1_2811325_2811727_-	cd08355, TioX_like, Micromonospora sp	NA|281aa|down_2|NZ_AP012555.1_2811680_2812523_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|146aa|down_3|NZ_AP012555.1_2812746_2813184_+	pfam00553, CBM_2, Cellulose binding domain	NA|237aa|down_4|NZ_AP012555.1_2813364_2814075_+	PRK07577, PRK07577, SDR family oxidoreductase	NA|218aa|down_5|NZ_AP012555.1_2814120_2814774_+	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family	NA|607aa|down_6|NZ_AP012555.1_2814797_2816618_-	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|196aa|down_7|NZ_AP012555.1_2817668_2818256_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|273aa|down_8|NZ_AP012555.1_2818369_2819188_+	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|388aa|down_9|NZ_AP012555.1_2819190_2820354_+	cd01160, LCAD, Long chain acyl-CoA dehydrogenase
GCF_000829075.1_ASM82907v1	NZ_AP012555	Mycobacterium avium subsp. hominissuis TH135	5	3085490-3085572	5	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK	Unclear	GGCCCAAGCTGAATCGCCCGGCTCCT	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK,c2c9_V-U4	NA|227aa|up_4|NZ_AP012555.1_3080594_3081275_+,NA|298aa|up_3|NZ_AP012555.1_3081278_3082172_-,NA|290aa|down_4|NZ_AP012555.1_3090340_3091210_-,NA|130aa|down_7|NZ_AP012555.1_3093415_3093805_-	NA|404aa|up_9|NZ_AP012555.1_3075844_3077056_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|387aa|up_8|NZ_AP012555.1_3077055_3078216_-	COG0275, COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]	NA|144aa|up_7|NZ_AP012555.1_3078190_3078622_-	COG2001, COG2001, Uncharacterized protein conserved in bacteria [Function unknown]	NA|134aa|up_6|NZ_AP012555.1_3079082_3079484_-	pfam11239, DUF3040, Protein of unknown function (DUF3040)	NA|200aa|up_5|NZ_AP012555.1_3079875_3080475_+	COG0456, RimI, Acetyltransferases [General function prediction only]	NA|227aa|up_4|NZ_AP012555.1_3080594_3081275_+	NA	NA|298aa|up_3|NZ_AP012555.1_3081278_3082172_-	NA	NA|350aa|up_2|NZ_AP012555.1_3082437_3083487_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|506aa|up_1|NZ_AP012555.1_3083491_3085009_+	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|135aa|up_0|NZ_AP012555.1_3085002_3085407_-	pfam18367, Rv2175c_C, Rv2175c C-terminal domain of unknown function	NA|397aa|down_0|NZ_AP012555.1_3085583_3086774_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|482aa|down_1|NZ_AP012555.1_3086909_3088355_+	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|463aa|down_2|NZ_AP012555.1_3088351_3089740_-	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|163aa|down_3|NZ_AP012555.1_3089831_3090320_-	pfam16473, DUF5051, 3' exoribonuclease, RNase T-like	NA|290aa|down_4|NZ_AP012555.1_3090340_3091210_-	NA	NA|430aa|down_5|NZ_AP012555.1_3091316_3092606_+	PRK13375, pimE, mannosyltransferase; Provisional	NA|242aa|down_6|NZ_AP012555.1_3092602_3093328_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|130aa|down_7|NZ_AP012555.1_3093415_3093805_-	NA	NA|413aa|down_8|NZ_AP012555.1_3093801_3095040_-	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|146aa|down_9|NZ_AP012555.1_3095074_3095512_-	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins
GCF_000829075.1_ASM82907v1	NZ_AP012555	Mycobacterium avium subsp. hominissuis TH135	6	3417061-3417147	6	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK	Orphan	CCGCCTTCGGCGGCCAGCTGTCCGCAGGC	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK,c2c9_V-U4	NA,NA|80aa|down_3|NZ_AP012555.1_3420966_3421206_+,NA|59aa|down_7|NZ_AP012555.1_3424013_3424190_+	NA|498aa|up_9|NZ_AP012555.1_3405680_3407174_-	PRK00784, PRK00784, cobyric acid synthase	NA|286aa|up_8|NZ_AP012555.1_3407178_3408036_-	PRK12896, PRK12896, methionine aminopeptidase; Reviewed	NA|196aa|up_7|NZ_AP012555.1_3408067_3408655_-	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|606aa|up_6|NZ_AP012555.1_3408700_3410518_-	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|285aa|up_5|NZ_AP012555.1_3410676_3411531_-	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|389aa|up_4|NZ_AP012555.1_3411579_3412746_-	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|408aa|up_3|NZ_AP012555.1_3412778_3414002_-	pfam02163, Peptidase_M50, Peptidase family M50	NA|408aa|up_2|NZ_AP012555.1_3414021_3415245_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|85aa|up_1|NZ_AP012555.1_3415366_3415621_+	pfam10939, DUF2631, Protein of unknown function (DUF2631)	NA|168aa|up_0|NZ_AP012555.1_3416480_3416984_-	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	NA|312aa|down_0|NZ_AP012555.1_3418243_3419179_-	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|186aa|down_1|NZ_AP012555.1_3419211_3419769_-	PRK00083, frr, ribosome recycling factor; Reviewed	NA|266aa|down_2|NZ_AP012555.1_3419837_3420635_-	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)	NA|80aa|down_3|NZ_AP012555.1_3420966_3421206_+	NA	NA|232aa|down_4|NZ_AP012555.1_3421374_3422070_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|323aa|down_5|NZ_AP012555.1_3422093_3423062_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|191aa|down_6|NZ_AP012555.1_3423127_3423700_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|59aa|down_7|NZ_AP012555.1_3424013_3424190_+	NA	NA|280aa|down_8|NZ_AP012555.1_3424249_3425089_+	cd05355, SDR_c1, classical (c) SDR, subgroup 1	NA|138aa|down_9|NZ_AP012555.1_3425179_3425593_-	pfam06150, ChaB, ChaB
GCF_000829075.1_ASM82907v1	NZ_AP012555	Mycobacterium avium subsp. hominissuis TH135	7	3419765-3419840	7	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK	Orphan	ATCATCTGCGCCGCTCCTCCTCA	23	1	1	3419788-3419817	NZ_AP012555.1_3537659-3537688	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK,c2c9_V-U4	NA,NA|80aa|down_0|NZ_AP012555.1_3420966_3421206_+,NA|59aa|down_4|NZ_AP012555.1_3424013_3424190_+	NA|196aa|up_9|NZ_AP012555.1_3408067_3408655_-	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|606aa|up_8|NZ_AP012555.1_3408700_3410518_-	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|285aa|up_7|NZ_AP012555.1_3410676_3411531_-	COG3393, COG3393, Predicted acetyltransferase [General function prediction only]	NA|389aa|up_6|NZ_AP012555.1_3411579_3412746_-	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|408aa|up_5|NZ_AP012555.1_3412778_3414002_-	pfam02163, Peptidase_M50, Peptidase family M50	NA|408aa|up_4|NZ_AP012555.1_3414021_3415245_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|85aa|up_3|NZ_AP012555.1_3415366_3415621_+	pfam10939, DUF2631, Protein of unknown function (DUF2631)	NA|168aa|up_2|NZ_AP012555.1_3416480_3416984_-	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif	NA|365aa|up_1|NZ_AP012555.1_3417114_3418209_-	PRK14459, PRK14459, ribosomal RNA large subunit methyltransferase N; Provisional	NA|312aa|up_0|NZ_AP012555.1_3418243_3419179_-	pfam01148, CTP_transf_1, Cytidylyltransferase family	NA|80aa|down_0|NZ_AP012555.1_3420966_3421206_+	NA	NA|232aa|down_1|NZ_AP012555.1_3421374_3422070_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|323aa|down_2|NZ_AP012555.1_3422093_3423062_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|191aa|down_3|NZ_AP012555.1_3423127_3423700_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|59aa|down_4|NZ_AP012555.1_3424013_3424190_+	NA	NA|280aa|down_5|NZ_AP012555.1_3424249_3425089_+	cd05355, SDR_c1, classical (c) SDR, subgroup 1	NA|138aa|down_6|NZ_AP012555.1_3425179_3425593_-	pfam06150, ChaB, ChaB	NA|141aa|down_7|NZ_AP012555.1_3425711_3426134_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|473aa|down_8|NZ_AP012555.1_3426134_3427553_-	PRK07869, PRK07869, amidase; Provisional	NA|276aa|down_9|NZ_AP012555.1_3427615_3428443_-	PRK09377, tsf, elongation factor Ts; Provisional
GCF_000829075.1_ASM82907v1	NZ_AP012555	Mycobacterium avium subsp. hominissuis TH135	8	3519441-3519531	8	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK	Orphan	CGGCGGCCCAACCGCGAGCGTCA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK,c2c9_V-U4	NA|415aa|up_1|NZ_AP012555.1_3517330_3518575_+,NA	NA|239aa|up_9|NZ_AP012555.1_3508862_3509579_-	pfam07510, DUF1524, Protein of unknown function (DUF1524)	NA|739aa|up_8|NZ_AP012555.1_3509575_3511792_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|556aa|up_7|NZ_AP012555.1_3511794_3513462_-	TIGR03599, YloV, DAK2 domain fusion protein YloV	NA|159aa|up_6|NZ_AP012555.1_3513609_3514086_-	cd13402, LT_TF-like, lytic transglycosylase-like domain of tail fiber-like proteins and similar domains	NA|65aa|up_5|NZ_AP012555.1_3514748_3514943_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|274aa|up_4|NZ_AP012555.1_3514956_3515778_-	TIGR03971, short-chain_dehydrogenase/reductase_SDR, SDR family mycofactocin-dependent oxidoreductase	NA|297aa|up_3|NZ_AP012555.1_3515789_3516680_-	PRK06197, PRK06197, short chain dehydrogenase; Provisional	NA|148aa|up_2|NZ_AP012555.1_3516764_3517208_+	pfam13577, SnoaL_4, SnoaL-like domain	NA|415aa|up_1|NZ_AP012555.1_3517330_3518575_+	NA	NA|277aa|up_0|NZ_AP012555.1_3518577_3519408_+	PRK06180, PRK06180, short chain dehydrogenase; Provisional	NA|316aa|down_0|NZ_AP012555.1_3520264_3521212_-	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|188aa|down_1|NZ_AP012555.1_3521305_3521869_+	pfam12028, DUF3515, Protein of unknown function (DUF3515)	NA|370aa|down_2|NZ_AP012555.1_3521865_3522975_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|352aa|down_3|NZ_AP012555.1_3523006_3524062_-	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|221aa|down_4|NZ_AP012555.1_3524186_3524849_+	TIGR03552, F420_cofC, 2-phospho-L-lactate guanylyltransferase	NA|731aa|down_5|NZ_AP012555.1_3524938_3527131_+	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|316aa|down_6|NZ_AP012555.1_3527215_3528163_+	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	NA|213aa|down_7|NZ_AP012555.1_3528257_3528896_-	COG0776, HimA, Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]	NA|199aa|down_8|NZ_AP012555.1_3529107_3529704_-	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|477aa|down_9|NZ_AP012555.1_3529729_3531160_-	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit
GCF_000829075.1_ASM82907v1	NZ_AP012555	Mycobacterium avium subsp. hominissuis TH135	9	3971282-3971372	9	CRISPRCasFinder	no	DinG	DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK	Type IV-A	AGCCCGGTGACGATGCCCGCCGCAGCGCGGCGG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK,c2c9_V-U4	NA|96aa|up_4|NZ_AP012555.1_3966182_3966470_-,NA|199aa|up_3|NZ_AP012555.1_3966537_3967134_-,NA	NA|251aa|up_9|NZ_AP012555.1_3960983_3961736_+	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]	NA|306aa|up_8|NZ_AP012555.1_3961732_3962650_-	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|118aa|up_7|NZ_AP012555.1_3962841_3963195_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|379aa|up_6|NZ_AP012555.1_3963568_3964705_-	pfam00823, PPE, PPE family	NA|379aa|up_5|NZ_AP012555.1_3964814_3965951_-	pfam00823, PPE, PPE family	NA|96aa|up_4|NZ_AP012555.1_3966182_3966470_-	NA	NA|199aa|up_3|NZ_AP012555.1_3966537_3967134_-	NA	NA|291aa|up_2|NZ_AP012555.1_3967173_3968046_-	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family	NA|585aa|up_1|NZ_AP012555.1_3968042_3969797_-	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|472aa|up_0|NZ_AP012555.1_3969853_3971269_-	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed	NA|156aa|down_0|NZ_AP012555.1_3971422_3971890_+	pfam13772, AIG2_2, AIG2-like family	NA|393aa|down_1|NZ_AP012555.1_3971912_3973091_-	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|401aa|down_2|NZ_AP012555.1_3973087_3974290_-	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily	NA|206aa|down_3|NZ_AP012555.1_3974335_3974953_-	pfam01083, Cutinase, Cutinase	NA|272aa|down_4|NZ_AP012555.1_3975205_3976021_+	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|258aa|down_5|NZ_AP012555.1_3977457_3978231_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|291aa|down_6|NZ_AP012555.1_3978353_3979226_+	pfam04185, Phosphoesterase, Phosphoesterase family	NA|438aa|down_7|NZ_AP012555.1_3979251_3980565_+	PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	NA|328aa|down_8|NZ_AP012555.1_3980597_3981581_+	PRK13685, PRK13685, hypothetical protein; Provisional	NA|336aa|down_9|NZ_AP012555.1_3981599_3982607_-	PRK13685, PRK13685, hypothetical protein; Provisional
GCF_000829075.1_ASM82907v1	NZ_AP012555	Mycobacterium avium subsp. hominissuis TH135	10	3975079-3975162	10	CRISPRCasFinder	no	DinG	DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK	Type IV-A	GGCTCGATCGCCCGACTCCTTACTCGC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK,c2c9_V-U4	NA|96aa|up_8|NZ_AP012555.1_3966182_3966470_-,NA|199aa|up_7|NZ_AP012555.1_3966537_3967134_-,NA	NA|379aa|up_9|NZ_AP012555.1_3964814_3965951_-	pfam00823, PPE, PPE family	NA|96aa|up_8|NZ_AP012555.1_3966182_3966470_-	NA	NA|199aa|up_7|NZ_AP012555.1_3966537_3967134_-	NA	NA|291aa|up_6|NZ_AP012555.1_3967173_3968046_-	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family	NA|585aa|up_5|NZ_AP012555.1_3968042_3969797_-	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|472aa|up_4|NZ_AP012555.1_3969853_3971269_-	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed	NA|156aa|up_3|NZ_AP012555.1_3971422_3971890_+	pfam13772, AIG2_2, AIG2-like family	NA|393aa|up_2|NZ_AP012555.1_3971912_3973091_-	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|401aa|up_1|NZ_AP012555.1_3973087_3974290_-	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily	NA|206aa|up_0|NZ_AP012555.1_3974335_3974953_-	pfam01083, Cutinase, Cutinase	NA|272aa|down_0|NZ_AP012555.1_3975205_3976021_+	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|258aa|down_1|NZ_AP012555.1_3977457_3978231_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|291aa|down_2|NZ_AP012555.1_3978353_3979226_+	pfam04185, Phosphoesterase, Phosphoesterase family	NA|438aa|down_3|NZ_AP012555.1_3979251_3980565_+	PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	NA|328aa|down_4|NZ_AP012555.1_3980597_3981581_+	PRK13685, PRK13685, hypothetical protein; Provisional	NA|336aa|down_5|NZ_AP012555.1_3981599_3982607_-	PRK13685, PRK13685, hypothetical protein; Provisional	NA|416aa|down_6|NZ_AP012555.1_3982732_3983980_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|154aa|down_7|NZ_AP012555.1_3984088_3984550_+	pfam11196, DUF2834, Protein of unknown function (DUF2834)	NA|367aa|down_8|NZ_AP012555.1_3984701_3985802_-	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|428aa|down_9|NZ_AP012555.1_3985798_3987082_-	PRK05820, deoA, thymidine phosphorylase; Reviewed
GCF_000829075.1_ASM82907v1	NZ_AP012555	Mycobacterium avium subsp. hominissuis TH135	11	4363699-4363843	11	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK	Orphan	CGCATCGTCGCCGGGCCTAAGCTGG	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,DinG,WYL,cas4,PD-DExK,c2c9_V-U4	NA,NA	NA|228aa|up_9|NZ_AP012555.1_4353492_4354176_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|410aa|up_8|NZ_AP012555.1_4354278_4355508_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|250aa|up_7|NZ_AP012555.1_4355672_4356422_-	PRK14120, gpmA, phosphoglyceromutase; Provisional	NA|170aa|up_6|NZ_AP012555.1_4356473_4356983_-	pfam10722, YbjN, Putative bacterial sensory transduction regulator	NA|425aa|up_5|NZ_AP012555.1_4356979_4358254_-	TIGR03449, mycothiol_MshA, D-inositol-3-phosphate glycosyltransferase	NA|429aa|up_4|NZ_AP012555.1_4358317_4359604_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|250aa|up_3|NZ_AP012555.1_4359830_4360580_+	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]	NA|460aa|up_2|NZ_AP012555.1_4360563_4361943_-	pfam17964, Big_10, Bacterial Ig domain	NA|373aa|up_1|NZ_AP012555.1_4361976_4363095_-	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase	NA|175aa|up_0|NZ_AP012555.1_4363121_4363646_+	pfam10698, DUF2505, Protein of unknown function (DUF2505)	NA|353aa|down_0|NZ_AP012555.1_4364609_4365668_+	pfam11209, DUF2993, Protein of unknown function (DUF2993)	NA|224aa|down_1|NZ_AP012555.1_4365680_4366352_-	PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional	NA|142aa|down_2|NZ_AP012555.1_4366348_4366774_-	pfam10783, DUF2599, Protein of unknown function (DUF2599)	NA|96aa|down_3|NZ_AP012555.1_4366778_4367066_-	pfam10724, DUF2516, Protein of unknown function (DUF2516)	NA|206aa|down_4|NZ_AP012555.1_4367154_4367772_-	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|139aa|down_5|NZ_AP012555.1_4367976_4368393_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|437aa|down_6|NZ_AP012555.1_4368476_4369787_-	COG2733, COG2733, Predicted membrane protein [Function unknown]	NA|236aa|down_7|NZ_AP012555.1_4369922_4370630_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|289aa|down_8|NZ_AP012555.1_4370765_4371632_+	pfam02353, CMAS, Mycolic acid cyclopropane synthetase	NA|287aa|down_9|NZ_AP012555.1_4371650_4372511_-	pfam02353, CMAS, Mycolic acid cyclopropane synthetase
