assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000828895.1_ASM82889v1	NZ_AP014568	Serpentinomonas raichei strain A1	1	736827-736991	1	CRISPRCasFinder	no		DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,cas4,cas8c	Orphan	GGCTGAGCCTGTCGAAGCCCTTGCGAGCCCTTCGATCCTTCGACAAGCTCAGGA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,cas4,cas8c	NA,NA	NA|267aa|up_9|NZ_AP014568.1_722341_723142_+	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase	NA|444aa|up_8|NZ_AP014568.1_723177_724509_+	PRK10887, glmM, phosphoglucosamine mutase; Provisional	NA|692aa|up_7|NZ_AP014568.1_724638_726714_+	PRK05443, PRK05443, polyphosphate kinase; Provisional	NA|158aa|up_6|NZ_AP014568.1_726716_727190_+	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms]	NA|495aa|up_5|NZ_AP014568.1_727190_728675_-	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]	NA|350aa|up_4|NZ_AP014568.1_728798_729848_+	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA	NA|521aa|up_3|NZ_AP014568.1_729886_731449_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|530aa|up_2|NZ_AP014568.1_731510_733100_-	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|539aa|up_1|NZ_AP014568.1_733087_734704_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|344aa|up_0|NZ_AP014568.1_734820_735852_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|938aa|down_0|NZ_AP014568.1_738520_741334_-	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|248aa|down_1|NZ_AP014568.1_741468_742212_-	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|344aa|down_2|NZ_AP014568.1_742309_743341_-	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|465aa|down_3|NZ_AP014568.1_743333_744728_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|183aa|down_4|NZ_AP014568.1_744720_745269_-	COG1510, COG1510, Predicted transcriptional regulators [Transcription]	NA|191aa|down_5|NZ_AP014568.1_745445_746018_+	TIGR01848, Uncharacterized_protein_Alvin_0064, polyhydroxyalkanoate synthesis repressor PhaR	NA|478aa|down_6|NZ_AP014568.1_746076_747510_+	PRK14862, rimO, 30S ribosomal protein S12 methylthiotransferase RimO	NA|769aa|down_7|NZ_AP014568.1_747746_750053_+	TIGR02063, Ribonuclease_R, ribonuclease R	NA|183aa|down_8|NZ_AP014568.1_750143_750692_+	pfam02325, YGGT, YGGT family	NA|539aa|down_9|NZ_AP014568.1_750709_752326_-	PRK10565, PRK10565, putative carbohydrate kinase; Provisional
GCF_000828895.1_ASM82889v1	NZ_AP014568	Serpentinomonas raichei strain A1	2	1273633-1273718	2	CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,cas4,cas8c	Type I-E	ATCCCCGCGCGAGCGGGGAACGGGC	25	0	0	NA	NA	NA	1	1	TypeI-E	DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,cas4,cas8c	NA,NA	NA|92aa|up_9|NZ_AP014568.1_1261990_1262266_+	PRK05408, PRK05408, oxidative damage protection protein; Provisional	NA|394aa|up_8|NZ_AP014568.1_1262347_1263529_+	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA|618aa|up_7|NZ_AP014568.1_1263506_1265360_-	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I	NA|610aa|up_6|NZ_AP014568.1_1265625_1267455_+	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	NA|143aa|up_5|NZ_AP014568.1_1267483_1267912_+	pfam06073, DUF934, Bacterial protein of unknown function (DUF934)	NA|562aa|up_4|NZ_AP014568.1_1267908_1269594_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|442aa|up_3|NZ_AP014568.1_1269593_1270919_+	COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]	NA|110aa|up_2|NZ_AP014568.1_1271036_1271366_+	pfam11953, DUF3470, Domain of unknown function (DUF3470)	NA|374aa|up_1|NZ_AP014568.1_1271407_1272529_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|312aa|up_0|NZ_AP014568.1_1272623_1273559_-	PRK11253, ldcA, L,D-carboxypeptidase A; Provisional	NA|155aa|down_0|NZ_AP014568.1_1274157_1274622_-	pfam05069, Phage_tail_S, Phage virion morphogenesis family	NA|243aa|down_1|NZ_AP014568.1_1274618_1275347_-	COG0863, COG0863, DNA modification methylase [DNA replication, recombination, and repair]	cas2|99aa|down_2|NZ_AP014568.1_1280087_1280384_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|304aa|down_3|NZ_AP014568.1_1280364_1281276_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	NA|123aa|down_4|NZ_AP014568.1_1281284_1281653_-	pfam18480, DUF5615, Domain of unknown function (DUF5615)	NA|80aa|down_5|NZ_AP014568.1_1281649_1281889_-	COG2442, COG2442, Uncharacterized conserved protein [Function unknown]	cas6e|209aa|down_6|NZ_AP014568.1_1281924_1282551_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|227aa|down_7|NZ_AP014568.1_1282541_1283222_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|376aa|down_8|NZ_AP014568.1_1283226_1284354_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|153aa|down_9|NZ_AP014568.1_1284350_1284809_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2
GCF_000828895.1_ASM82889v1	NZ_AP014568	Serpentinomonas raichei strain A1	3	1275539-1279909	3,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL	DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,cas4,cas8c	Type I-E	CGGTTCATCCCCGCGCGAGCGGGGAACAC,CGGTTCATCCCCGCGCGAGCGGGGAACAC,CGGTTCATCCCCGCGCGAGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	71,71,39	71	TypeI-E	DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,cas4,cas8c	NA,NA	NA|610aa|up_9|NZ_AP014568.1_1265625_1267455_+	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]	NA|143aa|up_8|NZ_AP014568.1_1267483_1267912_+	pfam06073, DUF934, Bacterial protein of unknown function (DUF934)	NA|562aa|up_7|NZ_AP014568.1_1267908_1269594_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|442aa|up_6|NZ_AP014568.1_1269593_1270919_+	COG2895, CysN, GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]	NA|110aa|up_5|NZ_AP014568.1_1271036_1271366_+	pfam11953, DUF3470, Domain of unknown function (DUF3470)	NA|374aa|up_4|NZ_AP014568.1_1271407_1272529_+	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|312aa|up_3|NZ_AP014568.1_1272623_1273559_-	PRK11253, ldcA, L,D-carboxypeptidase A; Provisional	NA|95aa|up_2|NZ_AP014568.1_1273669_1273954_-	pfam10123, Mu-like_Pro, Mu-like prophage I protein	NA|155aa|up_1|NZ_AP014568.1_1274157_1274622_-	pfam05069, Phage_tail_S, Phage virion morphogenesis family	NA|243aa|up_0|NZ_AP014568.1_1274618_1275347_-	COG0863, COG0863, DNA modification methylase [DNA replication, recombination, and repair]	cas2|99aa|down_0|NZ_AP014568.1_1280087_1280384_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|304aa|down_1|NZ_AP014568.1_1280364_1281276_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	NA|123aa|down_2|NZ_AP014568.1_1281284_1281653_-	pfam18480, DUF5615, Domain of unknown function (DUF5615)	NA|80aa|down_3|NZ_AP014568.1_1281649_1281889_-	COG2442, COG2442, Uncharacterized conserved protein [Function unknown]	cas6e|209aa|down_4|NZ_AP014568.1_1281924_1282551_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|227aa|down_5|NZ_AP014568.1_1282541_1283222_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|376aa|down_6|NZ_AP014568.1_1283226_1284354_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|153aa|down_7|NZ_AP014568.1_1284350_1284809_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|505aa|down_8|NZ_AP014568.1_1284805_1286320_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|884aa|down_9|NZ_AP014568.1_1286306_1288958_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3
GCF_000828895.1_ASM82889v1	NZ_AP014568	Serpentinomonas raichei strain A1	4	1487820-1493591	2,2,4	CRT,PILER-CR,CRISPRCasFinder	no	cas3,cas2,cas1,cas4,cas7,cas8c,cas5	DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,cas4,cas8c	Type I-U, Type I-U?,Type I-C	GTTTCAATCCACGCCCACCATTACTGGCGGGCGATTC,GTTTCAATCCACGCCCACCATTACTGGCGGGCGATTC,GTTTCAATCCACGCCCACCATTACTGGCGGGCGATTC	37,37,37	0	0	NA	NA	I-C:I-C:I-C	80,79,79	80	TypeI-U,TypeI-U?,TypeI-C	DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,cas4,cas8c	NA,NA	NA|456aa|up_9|NZ_AP014568.1_1477965_1479333_+	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	NA|451aa|up_8|NZ_AP014568.1_1479400_1480753_+	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase	NA|143aa|up_7|NZ_AP014568.1_1480778_1481207_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|270aa|up_6|NZ_AP014568.1_1481203_1482013_-	pfam09836, DUF2063, Putative DNA-binding domain	NA|319aa|up_5|NZ_AP014568.1_1482009_1482966_-	PRK05409, PRK05409, hypothetical protein; Provisional	NA|102aa|up_4|NZ_AP014568.1_1482991_1483297_-	pfam10048, DUF2282, Predicted integral membrane protein (DUF2282)	NA|188aa|up_3|NZ_AP014568.1_1483446_1484010_+	PRK12536, PRK12536, RNA polymerase sigma factor; Provisional	NA|214aa|up_2|NZ_AP014568.1_1484006_1484648_+	pfam06532, DUF1109, Protein of unknown function (DUF1109)	NA|409aa|up_1|NZ_AP014568.1_1484869_1486096_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|497aa|up_0|NZ_AP014568.1_1486179_1487670_+	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like	cas2|97aa|down_0|NZ_AP014568.1_1493792_1494083_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|349aa|down_1|NZ_AP014568.1_1494096_1495143_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|220aa|down_2|NZ_AP014568.1_1495152_1495812_-	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	NA|81aa|down_3|NZ_AP014568.1_1495834_1496077_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|69aa|down_4|NZ_AP014568.1_1496073_1496280_-	cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases	cas7|322aa|down_5|NZ_AP014568.1_1496290_1497256_-	TIGR02589, conserved_hypothetical_protein, CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG	cas8c|587aa|down_6|NZ_AP014568.1_1497278_1499039_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|229aa|down_7|NZ_AP014568.1_1499035_1499722_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|795aa|down_8|NZ_AP014568.1_1499746_1502131_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|144aa|down_9|NZ_AP014568.1_1502449_1502881_-	cd04765, HTH_MlrA-like_sg2, Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators
GCF_000828895.1_ASM82889v1	NZ_AP014568	Serpentinomonas raichei strain A1	5	1683886-1684013	5	CRISPRCasFinder	no		DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,cas4,cas8c	Orphan	CCGGGGTGAGGAATTGGAACGTGTGACTGACGAACCCCGGC	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,WYL,csa3,cas4,cas8c	NA|85aa|up_1|NZ_AP014568.1_1681416_1681671_+,NA	NA|263aa|up_9|NZ_AP014568.1_1672357_1673146_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|387aa|up_8|NZ_AP014568.1_1673142_1674303_+	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|305aa|up_7|NZ_AP014568.1_1674340_1675255_+	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family	NA|875aa|up_6|NZ_AP014568.1_1675270_1677895_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|176aa|up_5|NZ_AP014568.1_1677965_1678493_+	pfam00186, DHFR_1, Dihydrofolate reductase	NA|229aa|up_4|NZ_AP014568.1_1678489_1679176_-	COG3235, COG3235, Predicted membrane protein [Function unknown]	NA|462aa|up_3|NZ_AP014568.1_1679200_1680586_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|267aa|up_2|NZ_AP014568.1_1680619_1681420_+	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|85aa|up_1|NZ_AP014568.1_1681416_1681671_+	NA	NA|574aa|up_0|NZ_AP014568.1_1681690_1683412_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|263aa|down_0|NZ_AP014568.1_1685086_1685875_-	pfam13103, TonB_2, TonB C terminal	NA|163aa|down_1|NZ_AP014568.1_1685913_1686402_-	TIGR02801, Protein_TolR, TolR protein	NA|247aa|down_2|NZ_AP014568.1_1686424_1687165_-	TIGR02796, Protein_TolQ, TolQ protein	NA|159aa|down_3|NZ_AP014568.1_1687161_1687638_-	TIGR02799, Acyl-CoA_thioesterase_YbgC, tol-pal system-associated acyl-CoA thioesterase	NA|183aa|down_4|NZ_AP014568.1_1687651_1688200_-	PRK00202, nusB, transcription antitermination factor NusB	NA|168aa|down_5|NZ_AP014568.1_1688196_1688700_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|378aa|down_6|NZ_AP014568.1_1688701_1689835_-	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|207aa|down_7|NZ_AP014568.1_1689831_1690452_-	PRK09289, PRK09289, riboflavin synthase	NA|150aa|down_8|NZ_AP014568.1_1690458_1690908_-	PRK00464, nrdR, transcriptional repressor NrdR	NA|415aa|down_9|NZ_AP014568.1_1690965_1692210_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed
