assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000828835.1_ASM82883v1	NZ_AP014633	Thioploca ingrica DNA, complete genome	1	485689-485789	1	CRISPRCasFinder	no		DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	Orphan	TGGGATGAACAAAATCGCAAATGGGA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	NA,NA	NA|239aa|up_9|NZ_AP014633.1_474316_475033_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|238aa|up_8|NZ_AP014633.1_475029_475743_+	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional	NA|284aa|up_7|NZ_AP014633.1_475881_476733_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|551aa|up_6|NZ_AP014633.1_476789_478442_+	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|111aa|up_5|NZ_AP014633.1_478808_479141_+	COG4378, COG4378, Uncharacterized protein conserved in bacteria [Function unknown]	NA|569aa|up_4|NZ_AP014633.1_479500_481207_+	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB	NA|709aa|up_3|NZ_AP014633.1_481276_483403_-	pfam03065, Glyco_hydro_57, Glycosyl hydrolase family 57	NA|261aa|up_2|NZ_AP014633.1_483505_484288_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|184aa|up_1|NZ_AP014633.1_484322_484874_+	COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]	NA|147aa|up_0|NZ_AP014633.1_484987_485428_+	pfam01724, DUF29, Domain of unknown function DUF29	NA|1043aa|down_0|NZ_AP014633.1_486437_489566_+	smart00237, Calx_beta, Domains in Na-Ca exchangers and integrin-beta4	NA|260aa|down_1|NZ_AP014633.1_489685_490465_-	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|597aa|down_2|NZ_AP014633.1_490477_492268_-	PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|132aa|down_3|NZ_AP014633.1_492269_492665_-	cd03495, SQR_TypeC_SdhD_like, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit-like; composed of predominantly uncharacterized bacterial proteins with similarity to the E	NA|129aa|down_4|NZ_AP014633.1_492661_493048_-	cd03499, SQR_TypeC_SdhC, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins	NA|229aa|down_5|NZ_AP014633.1_493261_493948_-	cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate	NA|304aa|down_6|NZ_AP014633.1_493995_494907_-	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like	NA|498aa|down_7|NZ_AP014633.1_495150_496644_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|303aa|down_8|NZ_AP014633.1_497105_498014_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|215aa|down_9|NZ_AP014633.1_498055_498700_+	pfam18475, PIN7, PIN domain
GCF_000828835.1_ASM82883v1	NZ_AP014633	Thioploca ingrica DNA, complete genome	2	619211-619523	2,1	CRISPRCasFinder,PILER-CR	no		DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	Orphan	AATGGTGGATTCGGTGGCGGCGGTGGCT,GGAGGCAATGGTGGATTCGGTGGCGGCGGTGGCTACGG	28,38	0	0	NA	NA	NA:NA	4,2	4	Orphan	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	NA,NA	NA|160aa|up_9|NZ_AP014633.1_610979_611459_+	PRK06411, PRK06411, NADH-quinone oxidoreductase subunit NuoB	NA|219aa|up_8|NZ_AP014633.1_611476_612133_+	PRK06074, PRK06074, NADH dehydrogenase subunit C; Provisional	NA|418aa|up_7|NZ_AP014633.1_612144_613398_+	PRK06075, PRK06075, NADH-quinone oxidoreductase subunit D	NA|90aa|up_6|NZ_AP014633.1_613517_613787_+	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|98aa|up_5|NZ_AP014633.1_613797_614091_+	pfam10387, DUF2442, Protein of unknown function (DUF2442)	NA|170aa|up_4|NZ_AP014633.1_614151_614661_+	PRK07539, PRK07539, NADH-quinone oxidoreductase subunit NuoE	NA|84aa|up_3|NZ_AP014633.1_614724_614976_+	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|326aa|up_2|NZ_AP014633.1_614972_615950_+	TIGR02116, Hypothetical_protein_Rv3358/MT3466/Mb3393	NA|161aa|up_1|NZ_AP014633.1_615979_616462_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|424aa|up_0|NZ_AP014633.1_616492_617764_+	TIGR01959, NADH-quinone_oxidoreductase_subunit_F, NADH-quinone oxidoreductase, F subunit	NA|278aa|down_0|NZ_AP014633.1_620598_621432_+	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|87aa|down_1|NZ_AP014633.1_621681_621942_+	pfam10049, DUF2283, Protein of unknown function (DUF2283)	NA|151aa|down_2|NZ_AP014633.1_622088_622541_+	pfam01724, DUF29, Domain of unknown function DUF29	NA|439aa|down_3|NZ_AP014633.1_622659_623976_-	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|536aa|down_4|NZ_AP014633.1_624017_625625_-	PRK09255, PRK09255, malate synthase; Validated	NA|576aa|down_5|NZ_AP014633.1_626396_628124_+	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional	NA|175aa|down_6|NZ_AP014633.1_628332_628857_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|377aa|down_7|NZ_AP014633.1_629141_630272_+	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_8|NZ_AP014633.1_630329_630953_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|122aa|down_9|NZ_AP014633.1_631733_632099_+	cd17548, REC_DivK-like, phosphoacceptor receiver (REC) domain of DivK and similar proteins
GCF_000828835.1_ASM82883v1	NZ_AP014633	Thioploca ingrica DNA, complete genome	3	656304-660199	3,1,2,3	CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	Type I-B	GTTTCAATCCTTGTTGTACTGGATATAGCTCAAGAGC,GTTTCAATCCTTGTTGTACTGGATATAGCTCAAGAGC,GTTTCAATCCTTGTTGTACTGGATATAGCTCAAGAGC,GTTTCAATCCTTGTTGTACTGGATATAGCTCAAGAGC	37,37,37,37	0	0	NA	NA	?:?:?:?	53,53,50,50	53	TypeI-B	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	NA,NA	NA|163aa|up_9|NZ_AP014633.1_645515_646004_-	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea	NA|677aa|up_8|NZ_AP014633.1_646023_648054_-	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|123aa|up_7|NZ_AP014633.1_648168_648537_-	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|72aa|up_6|NZ_AP014633.1_648794_649010_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|75aa|up_5|NZ_AP014633.1_649006_649231_+	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family    [General function prediction only]	NA|302aa|up_4|NZ_AP014633.1_649395_650301_+	PRK00942, PRK00942, acetylglutamate kinase; Provisional	NA|82aa|up_3|NZ_AP014633.1_650369_650615_-	COG2938, COG2938, Uncharacterized conserved protein [Function unknown]	NA|1003aa|up_2|NZ_AP014633.1_650629_653638_-	cd19985, PBP1_ABC_HAAT-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of hydrophobic amino acids or peptides	NA|611aa|up_1|NZ_AP014633.1_653910_655743_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|189aa|up_0|NZ_AP014633.1_655733_656300_+	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	cas4|193aa|down_0|NZ_AP014633.1_660466_661045_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas2|102aa|down_1|NZ_AP014633.1_661074_661380_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|326aa|down_2|NZ_AP014633.1_661376_662354_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|68aa|down_3|NZ_AP014633.1_662571_662775_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	cas6|228aa|down_4|NZ_AP014633.1_662851_663535_-	pfam17262, DUF5328, Family of unknown function (DUF5328)	cas3|817aa|down_5|NZ_AP014633.1_663522_665973_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|88aa|down_6|NZ_AP014633.1_666135_666399_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|85aa|down_7|NZ_AP014633.1_666395_666650_-	PRK11409, PRK11409, YoeB-YefM toxin-antitoxin system antitoxin YefM	cas5|250aa|down_8|NZ_AP014633.1_666718_667468_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|318aa|down_9|NZ_AP014633.1_667480_668434_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI
GCF_000828835.1_ASM82883v1	NZ_AP014633	Thioploca ingrica DNA, complete genome	4	670837-672280	4,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	Type I-B	GTTTCAATCCTTGTTGTACTGGATATCGCTCAAGAGC,GCTCTTGAGCTATATCCAGTACAACAAGGATTGAAAC,GCTCTTGAGCGATATCCAGTACAACAAGGATTGAAAC	37,37,37	0	0	NA	NA	?:?:?	18,18,19	19	TypeI-B	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	NA,NA|165aa|down_3|NZ_AP014633.1_676085_676580_+,NA|188aa|down_4|NZ_AP014633.1_676566_677130_+	cas2|102aa|up_9|NZ_AP014633.1_661074_661380_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|326aa|up_8|NZ_AP014633.1_661376_662354_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	NA|68aa|up_7|NZ_AP014633.1_662571_662775_+	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	cas6|228aa|up_6|NZ_AP014633.1_662851_663535_-	pfam17262, DUF5328, Family of unknown function (DUF5328)	cas3|817aa|up_5|NZ_AP014633.1_663522_665973_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|88aa|up_4|NZ_AP014633.1_666135_666399_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|85aa|up_3|NZ_AP014633.1_666395_666650_-	PRK11409, PRK11409, YoeB-YefM toxin-antitoxin system antitoxin YefM	cas5|250aa|up_2|NZ_AP014633.1_666718_667468_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|318aa|up_1|NZ_AP014633.1_667480_668434_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|680aa|up_0|NZ_AP014633.1_668426_670466_-	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	NA|406aa|down_0|NZ_AP014633.1_672483_673701_-	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|172aa|down_1|NZ_AP014633.1_673714_674230_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|474aa|down_2|NZ_AP014633.1_674396_675818_+	TIGR03505, FimV_core, FimV N-terminal domain	NA|165aa|down_3|NZ_AP014633.1_676085_676580_+	NA	NA|188aa|down_4|NZ_AP014633.1_676566_677130_+	NA	NA|2980aa|down_5|NZ_AP014633.1_677230_686170_-	NF012200, choice_anch_D, choice-of-anchor D domain-containing protein	NA|157aa|down_6|NZ_AP014633.1_686839_687310_+	pfam01625, PMSR, Peptide methionine sulfoxide reductase	NA|310aa|down_7|NZ_AP014633.1_687335_688265_+	pfam05036, SPOR, Sporulation related domain	NA|299aa|down_8|NZ_AP014633.1_688516_689413_+	PRK02114, PRK02114, formylmethanofuran--tetrahydromethanopterin formyltransferase; Provisional	NA|275aa|down_9|NZ_AP014633.1_689409_690234_+	TIGR03122, one_C_dehyd_C, formylmethanofuran dehydrogenase subunit C
GCF_000828835.1_ASM82883v1	NZ_AP014633	Thioploca ingrica DNA, complete genome	5	1253253-1253353	5	CRISPRCasFinder	no		DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	Orphan	GACTACGAATCCGATCAGGATGA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	NA|403aa|up_9|NZ_AP014633.1_1239059_1240268_-,NA|188aa|down_6|NZ_AP014633.1_1267286_1267850_-,NA|351aa|down_7|NZ_AP014633.1_1267861_1268914_-	NA|403aa|up_9|NZ_AP014633.1_1239059_1240268_-	NA	NA|74aa|up_8|NZ_AP014633.1_1240806_1241028_+	smart00966, SpoVT_AbrB, SpoVT / AbrB like domain	NA|232aa|up_7|NZ_AP014633.1_1241175_1241871_+	cd16275, BaeB-like_MBL-fold, Bacillus amyloliquefaciens BaeB and related proteins; MBL-fold metallo hydrolase domain	NA|347aa|up_6|NZ_AP014633.1_1241881_1242922_+	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only]	NA|565aa|up_5|NZ_AP014633.1_1242972_1244667_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|350aa|up_4|NZ_AP014633.1_1244886_1245936_-	smart00854, PGA_cap, Bacterial capsule synthesis protein PGA_cap	NA|403aa|up_3|NZ_AP014633.1_1246254_1247463_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|220aa|up_2|NZ_AP014633.1_1247573_1248233_+	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit	NA|362aa|up_1|NZ_AP014633.1_1248239_1249325_+	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional	NA|341aa|up_0|NZ_AP014633.1_1249489_1250512_+	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|256aa|down_0|NZ_AP014633.1_1255116_1255884_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|1815aa|down_1|NZ_AP014633.1_1256128_1261573_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|374aa|down_2|NZ_AP014633.1_1261840_1262962_+	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains	NA|172aa|down_3|NZ_AP014633.1_1262970_1263486_-	pfam00731, AIRC, AIR carboxylase	NA|388aa|down_4|NZ_AP014633.1_1263478_1264642_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|664aa|down_5|NZ_AP014633.1_1265221_1267213_+	cd09597, M4_TLP, Peptidase M4 family including thermolysin, protealysin, aureolysin, and neutral protease	NA|188aa|down_6|NZ_AP014633.1_1267286_1267850_-	NA	NA|351aa|down_7|NZ_AP014633.1_1267861_1268914_-	NA	NA|390aa|down_8|NZ_AP014633.1_1268864_1270034_-	pfam03934, T2SSK, Type II secretion system (T2SS), protein K	NA|211aa|down_9|NZ_AP014633.1_1270061_1270694_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_000828835.1_ASM82883v1	NZ_AP014633	Thioploca ingrica DNA, complete genome	6	1566280-1566422	6	CRISPRCasFinder	no	DEDDh	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	Unclear	TGGGAAGATTTTAAGCAAGAACTACAACGAGATCGAGAAGAACAAGC	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	NA|255aa|up_8|NZ_AP014633.1_1553695_1554460_+,NA|141aa|up_2|NZ_AP014633.1_1563584_1564007_+,NA|329aa|down_2|NZ_AP014633.1_1569761_1570748_+	NA|495aa|up_9|NZ_AP014633.1_1552116_1553601_+	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated	NA|255aa|up_8|NZ_AP014633.1_1553695_1554460_+	NA	NA|369aa|up_7|NZ_AP014633.1_1554644_1555751_-	TIGR04407, LptF_YjgP, LPS export ABC transporter permease LptF	NA|521aa|up_6|NZ_AP014633.1_1555924_1557487_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|145aa|up_5|NZ_AP014633.1_1557550_1557985_+	pfam04364, DNA_pol3_chi, DNA polymerase III chi subunit, HolC	NA|455aa|up_4|NZ_AP014633.1_1560182_1561547_-	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e	NA|544aa|up_3|NZ_AP014633.1_1561784_1563416_-	cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes	NA|141aa|up_2|NZ_AP014633.1_1563584_1564007_+	NA	NA|417aa|up_1|NZ_AP014633.1_1564019_1565270_+	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|227aa|up_0|NZ_AP014633.1_1565262_1565943_+	TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein	NA|414aa|down_0|NZ_AP014633.1_1566988_1568230_-	pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain	NA|348aa|down_1|NZ_AP014633.1_1568251_1569295_-	PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed	NA|329aa|down_2|NZ_AP014633.1_1569761_1570748_+	NA	NA|601aa|down_3|NZ_AP014633.1_1571214_1573017_+	pfam04348, LppC, LppC putative lipoprotein	NA|130aa|down_4|NZ_AP014633.1_1573035_1573425_+	PRK12497, PRK12497, YraN family protein	NA|240aa|down_5|NZ_AP014633.1_1573432_1574152_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|228aa|down_6|NZ_AP014633.1_1574239_1574923_-	cd01021, GEWL, Goose egg-white lysozyme	NA|195aa|down_7|NZ_AP014633.1_1574988_1575573_-	PLN03185, PLN03185, phosphatidylinositol phosphate kinase; Provisional	NA|670aa|down_8|NZ_AP014633.1_1575874_1577884_+	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|287aa|down_9|NZ_AP014633.1_1577947_1578808_+	PRK05457, PRK05457, protease HtpX
GCF_000828835.1_ASM82883v1	NZ_AP014633	Thioploca ingrica DNA, complete genome	7	1776416-1777142	3,5,7	CRT,PILER-CR,CRISPRCasFinder	no		DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	Orphan	GCAACTGAGTCAAAGCACTCAAGTCGGGGATAGGACC,TAAACCAAGGCCCTGCAACTGAGTCAAAGCACTCAAGTCGGGGATAGGACCGCTTAA,TAGCTGATTATAAGACAAATCAAG	37,57,24	0	0	NA	NA	NA:NA:NA	10,3,1	10	Orphan	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	NA|243aa|up_7|NZ_AP014633.1_1762081_1762810_-,NA|82aa|up_6|NZ_AP014633.1_1763134_1763380_+,NA|123aa|up_1|NZ_AP014633.1_1769539_1769908_+,NA|79aa|down_5|NZ_AP014633.1_1784029_1784266_+	NA|379aa|up_9|NZ_AP014633.1_1760354_1761491_+	TIGR04321, hypothetical_protein_TresaDRAFT_0163, spiro-SPASM protein	NA|187aa|up_8|NZ_AP014633.1_1761504_1762065_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|243aa|up_7|NZ_AP014633.1_1762081_1762810_-	NA	NA|82aa|up_6|NZ_AP014633.1_1763134_1763380_+	NA	NA|177aa|up_5|NZ_AP014633.1_1763443_1763974_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|205aa|up_4|NZ_AP014633.1_1764478_1765093_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|342aa|up_3|NZ_AP014633.1_1765074_1766100_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1084aa|up_2|NZ_AP014633.1_1766071_1769323_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|123aa|up_1|NZ_AP014633.1_1769539_1769908_+	NA	NA|971aa|up_0|NZ_AP014633.1_1770026_1772939_+	cd17921, DEXHc_Ski2, DEXH-box helicase domain of DEAD-like helicase Ski2 family proteins	NA|70aa|down_0|NZ_AP014633.1_1778858_1779068_+	PRK11840, PRK11840, bifunctional sulfur carrier protein/thiazole synthase protein; Provisional	NA|483aa|down_1|NZ_AP014633.1_1779057_1780506_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|97aa|down_2|NZ_AP014633.1_1780638_1780929_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|543aa|down_3|NZ_AP014633.1_1780978_1782607_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|327aa|down_4|NZ_AP014633.1_1782841_1783822_+	cd13962, PT_UbiA_UBIAD1, 1,4-Dihydroxy-2-naphthoate octaprenyltransferase	NA|79aa|down_5|NZ_AP014633.1_1784029_1784266_+	NA	NA|112aa|down_6|NZ_AP014633.1_1784716_1785052_+	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family	NA|426aa|down_7|NZ_AP014633.1_1785132_1786410_+	PRK06084, PRK06084, bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	NA|738aa|down_8|NZ_AP014633.1_1786676_1788890_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|582aa|down_9|NZ_AP014633.1_1789519_1791265_+	pfam00931, NB-ARC, NB-ARC domain
GCF_000828835.1_ASM82883v1	NZ_AP014633	Thioploca ingrica DNA, complete genome	8	2930869-2930968	8	CRISPRCasFinder	no		DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	Orphan	TCCTAGATTGAAAATACCTCCTCCG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	NA|85aa|up_9|NZ_AP014633.1_2920223_2920478_-,NA|83aa|up_0|NZ_AP014633.1_2929298_2929547_-,NA|106aa|down_0|NZ_AP014633.1_2931722_2932040_+,NA|124aa|down_1|NZ_AP014633.1_2932026_2932398_+,NA|81aa|down_8|NZ_AP014633.1_2937325_2937568_-,NA|75aa|down_9|NZ_AP014633.1_2937847_2938072_+	NA|85aa|up_9|NZ_AP014633.1_2920223_2920478_-	NA	NA|137aa|up_8|NZ_AP014633.1_2920571_2920982_-	pfam13384, HTH_23, Homeodomain-like domain	NA|49aa|up_7|NZ_AP014633.1_2921032_2921179_-	pfam03534, SpvB, Salmonella virulence plasmid 65kDa B protein	NA|133aa|up_6|NZ_AP014633.1_2921198_2921597_-	pfam03400, DDE_Tnp_IS1, IS1 transposase	NA|483aa|up_5|NZ_AP014633.1_2922235_2923684_-	cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins	NA|456aa|up_4|NZ_AP014633.1_2923784_2925152_+	pfam06097, DUF945, Bacterial protein of unknown function (DUF945)	NA|194aa|up_3|NZ_AP014633.1_2925174_2925756_-	TIGR03784, marine_sortase, sortase, marine proteobacterial type	NA|235aa|up_2|NZ_AP014633.1_2926359_2927064_+	TIGR03787, marine_sort_RR, proteobacterial dedicated sortase system response regulator	NA|706aa|up_1|NZ_AP014633.1_2927075_2929193_+	TIGR03785, marine_sort_HK, proteobacterial dedicated sortase system histidine kinase	NA|83aa|up_0|NZ_AP014633.1_2929298_2929547_-	NA	NA|106aa|down_0|NZ_AP014633.1_2931722_2932040_+	NA	NA|124aa|down_1|NZ_AP014633.1_2932026_2932398_+	NA	NA|148aa|down_2|NZ_AP014633.1_2932462_2932906_+	pfam01724, DUF29, Domain of unknown function DUF29	NA|232aa|down_3|NZ_AP014633.1_2933024_2933720_+	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional	NA|259aa|down_4|NZ_AP014633.1_2933784_2934561_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|219aa|down_5|NZ_AP014633.1_2934614_2935271_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|208aa|down_6|NZ_AP014633.1_2935274_2935898_+	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|380aa|down_7|NZ_AP014633.1_2936002_2937142_+	cd00041, CUB, CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast	NA|81aa|down_8|NZ_AP014633.1_2937325_2937568_-	NA	NA|75aa|down_9|NZ_AP014633.1_2937847_2938072_+	NA
GCF_000828835.1_ASM82883v1	NZ_AP014633	Thioploca ingrica DNA, complete genome	9	3502299-3502402	9	CRISPRCasFinder	no	PD-DExK	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	Unclear	CGTTCCCACGCTGGAGCGTGGGAA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	NA|80aa|up_9|NZ_AP014633.1_3492130_3492370_-,NA|580aa|up_8|NZ_AP014633.1_3492473_3494213_-,NA|102aa|up_6|NZ_AP014633.1_3496626_3496932_+,NA|201aa|up_5|NZ_AP014633.1_3497115_3497718_+,PD-DExK|226aa|up_1|NZ_AP014633.1_3500876_3501554_-,NA|239aa|down_7|NZ_AP014633.1_3511810_3512527_-	NA|80aa|up_9|NZ_AP014633.1_3492130_3492370_-	NA	NA|580aa|up_8|NZ_AP014633.1_3492473_3494213_-	NA	NA|272aa|up_7|NZ_AP014633.1_3495506_3496322_+	pfam06210, DUF1003, Protein of unknown function (DUF1003)	NA|102aa|up_6|NZ_AP014633.1_3496626_3496932_+	NA	NA|201aa|up_5|NZ_AP014633.1_3497115_3497718_+	NA	NA|141aa|up_4|NZ_AP014633.1_3497995_3498418_-	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	NA|459aa|up_3|NZ_AP014633.1_3498481_3499858_-	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|288aa|up_2|NZ_AP014633.1_3499915_3500779_-	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	PD-DExK|226aa|up_1|NZ_AP014633.1_3500876_3501554_-	NA	NA|211aa|up_0|NZ_AP014633.1_3501589_3502222_-	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|514aa|down_0|NZ_AP014633.1_3502490_3504032_-	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|179aa|down_1|NZ_AP014633.1_3504051_3504588_-	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	NA|157aa|down_2|NZ_AP014633.1_3504598_3505069_-	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated	NA|98aa|down_3|NZ_AP014633.1_3505090_3505384_-	PRK06876, PRK06876, F0F1 ATP synthase subunit C; Validated	NA|272aa|down_4|NZ_AP014633.1_3505584_3506400_-	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|135aa|down_5|NZ_AP014633.1_3506437_3506842_-	pfam03899, ATP-synt_I, ATP synthase I chain	NA|1459aa|down_6|NZ_AP014633.1_3507282_3511659_+	pfam08447, PAS_3, PAS fold	NA|239aa|down_7|NZ_AP014633.1_3511810_3512527_-	NA	NA|215aa|down_8|NZ_AP014633.1_3512728_3513373_-	pfam13578, Methyltransf_24, Methyltransferase domain	NA|481aa|down_9|NZ_AP014633.1_3513372_3514815_-	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN
GCF_000828835.1_ASM82883v1	NZ_AP014633	Thioploca ingrica DNA, complete genome	10	3648150-3648229	10	CRISPRCasFinder	no		DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	Orphan	AATGCTTGACTGGCTTCATCAAAGTT	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	NA|104aa|up_3|NZ_AP014633.1_3635053_3635365_-,NA|73aa|down_1|NZ_AP014633.1_3650072_3650291_-,NA|237aa|down_2|NZ_AP014633.1_3650590_3651301_-,NA|83aa|down_4|NZ_AP014633.1_3652367_3652616_-,NA|110aa|down_9|NZ_AP014633.1_3672760_3673090_+	NA|308aa|up_9|NZ_AP014633.1_3627402_3628326_+	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate	NA|877aa|up_8|NZ_AP014633.1_3628778_3631409_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|266aa|up_7|NZ_AP014633.1_3631410_3632208_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|265aa|up_6|NZ_AP014633.1_3632415_3633210_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|202aa|up_5|NZ_AP014633.1_3633232_3633838_-	PRK00031, lolA, outer membrane lipoprotein chaperone LolA	NA|392aa|up_4|NZ_AP014633.1_3633870_3635046_-	smart00989, V4R, The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons	NA|104aa|up_3|NZ_AP014633.1_3635053_3635365_-	NA	NA|1824aa|up_2|NZ_AP014633.1_3635636_3641108_-	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|582aa|up_1|NZ_AP014633.1_3641493_3643239_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|1396aa|up_0|NZ_AP014633.1_3643245_3647433_+	pfam02369, Big_1, Bacterial Ig-like domain (group 1)	NA|187aa|down_0|NZ_AP014633.1_3649160_3649721_-	COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]	NA|73aa|down_1|NZ_AP014633.1_3650072_3650291_-	NA	NA|237aa|down_2|NZ_AP014633.1_3650590_3651301_-	NA	NA|345aa|down_3|NZ_AP014633.1_3651332_3652367_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|83aa|down_4|NZ_AP014633.1_3652367_3652616_-	NA	NA|1004aa|down_5|NZ_AP014633.1_3652631_3655643_-	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]	NA|476aa|down_6|NZ_AP014633.1_3655655_3657083_-	PRK08238, PRK08238, UbiA family prenyltransferase	NA|3125aa|down_7|NZ_AP014633.1_3657990_3667365_+	pfam17963, Big_9, Bacterial Ig domain	NA|1675aa|down_8|NZ_AP014633.1_3667603_3672628_+	pfam17963, Big_9, Bacterial Ig domain	NA|110aa|down_9|NZ_AP014633.1_3672760_3673090_+	NA
GCF_000828835.1_ASM82883v1	NZ_AP014633	Thioploca ingrica DNA, complete genome	11	4257786-4257902	11	CRISPRCasFinder	no	PD-DExK	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	Unclear	CATTGGCCCATTGTGAACCTTGGCTAGGAGTGGTGGGAGTTGATT	45	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,PD-DExK,cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1,csa3,c2c9_V-U4	PD-DExK|211aa|up_8|NZ_AP014633.1_4242072_4242705_+,NA|87aa|up_4|NZ_AP014633.1_4247131_4247392_+,NA|69aa|down_1|NZ_AP014633.1_4267026_4267233_-	NA|160aa|up_9|NZ_AP014633.1_4241558_4242038_+	cd06260, DUF820, Domain of unknown function (DUF820)	PD-DExK|211aa|up_8|NZ_AP014633.1_4242072_4242705_+	NA	NA|70aa|up_7|NZ_AP014633.1_4242733_4242943_-	pfam09957, VapB_antitoxin, Bacterial antitoxin of type II TA system, VapB	NA|455aa|up_6|NZ_AP014633.1_4243093_4244458_-	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed	NA|887aa|up_5|NZ_AP014633.1_4244469_4247130_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|87aa|up_4|NZ_AP014633.1_4247131_4247392_+	NA	NA|898aa|up_3|NZ_AP014633.1_4247736_4250430_+	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only]	NA|201aa|up_2|NZ_AP014633.1_4250535_4251138_-	cd06260, DUF820, Domain of unknown function (DUF820)	NA|1383aa|up_1|NZ_AP014633.1_4251166_4255315_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|135aa|up_0|NZ_AP014633.1_4255392_4255797_-	sd00006, TPR, Tetratricopeptide repeat	NA|1984aa|down_0|NZ_AP014633.1_4260612_4266564_-	NF012200, choice_anch_D, choice-of-anchor D domain-containing protein	NA|69aa|down_1|NZ_AP014633.1_4267026_4267233_-	NA	NA|100aa|down_2|NZ_AP014633.1_4267386_4267686_-	pfam04359, DUF493, Protein of unknown function (DUF493)	NA|281aa|down_3|NZ_AP014633.1_4267678_4268521_-	cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids	NA|383aa|down_4|NZ_AP014633.1_4268533_4269682_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|181aa|down_5|NZ_AP014633.1_4269803_4270346_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|346aa|down_6|NZ_AP014633.1_4270266_4271304_-	pfam13406, SLT_2, Transglycosylase SLT domain	NA|365aa|down_7|NZ_AP014633.1_4271340_4272435_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|629aa|down_8|NZ_AP014633.1_4272513_4274400_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|163aa|down_9|NZ_AP014633.1_4274471_4274960_-	PRK11060, PRK11060, rod shape-determining protein MreD; Provisional
