assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000828675.1_ASM82867v1	NZ_AP014510	Thermotoga profunda AZM34c06	1	238239-244124	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7	cas3HD,DEDDh,cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PrimPol,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,csm6,csx1,csx20,csa3,WYL,c2c9_V-U4	Type III-C,Type III-D,Type III-A,Type III-B,Type I-B	GTTTCCATTCCTCTTAGATTCGATTGAAAC,GTTTCCATTCCTCTTAGATTCGATTGAAAC,GTTTCCATTCCTCTTAGATTCGATTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	88,88,88	88	TypeIII-C,TypeIII-D,TypeIII-A,TypeIII-B,TypeI-B	cas3HD,DEDDh,cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PrimPol,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,csm6,csx1,csx20,csa3,WYL,c2c9_V-U4	NA,NA|47aa|down_9|NZ_AP014510.1_253215_253356_-	NA|72aa|up_9|NZ_AP014510.1_222375_222591_-	pfam02609, Exonuc_VII_S, Exonuclease VII small subunit	NA|397aa|up_8|NZ_AP014510.1_222565_223756_-	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|506aa|up_7|NZ_AP014510.1_223730_225248_-	cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS homologs	NA|683aa|up_6|NZ_AP014510.1_225340_227389_-	PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated	NA|435aa|up_5|NZ_AP014510.1_227413_228718_-	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|385aa|up_4|NZ_AP014510.1_228711_229866_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|222aa|up_3|NZ_AP014510.1_229846_230512_-	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family	NA|408aa|up_2|NZ_AP014510.1_230575_231799_-	cd01117, YbiR_permease, Putative anion permease YbiR	NA|591aa|up_1|NZ_AP014510.1_231892_233665_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|786aa|up_0|NZ_AP014510.1_234775_237133_+	PRK05261, PRK05261, phosphoketolase	cas3|746aa|down_0|NZ_AP014510.1_244565_246803_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|232aa|down_1|NZ_AP014510.1_246790_247486_-	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas7|295aa|down_2|NZ_AP014510.1_247482_248367_-	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas8b1|571aa|down_3|NZ_AP014510.1_248359_250072_-	cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas2|88aa|down_4|NZ_AP014510.1_250089_250353_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|328aa|down_5|NZ_AP014510.1_250362_251346_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|164aa|down_6|NZ_AP014510.1_251355_251847_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas6|260aa|down_7|NZ_AP014510.1_251859_252639_-	COG1583, COG1583, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|99aa|down_8|NZ_AP014510.1_252817_253114_-	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]	NA|47aa|down_9|NZ_AP014510.1_253215_253356_-	NA
GCF_000828675.1_ASM82867v1	NZ_AP014510	Thermotoga profunda AZM34c06	2	263499-266414	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PrimPol,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,csm6,csx1,csx20	cas3HD,DEDDh,cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PrimPol,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,csm6,csx1,csx20,csa3,WYL,c2c9_V-U4	Type III-C,Type III-D,Type III-A,Type III-B,Type I-B	GTTTCCATCTCTTTCAGAGAGAACCTTCTTTCGGAC,GTTTCCATCTCTTTCAGAGAGAACCTTCTTTCGGAC,GTTTCCATCTCTTTCAGAGAGAACCTTCTTTCGGAC	36,36,36	0	0	NA	NA	NA:NA:NA	38,38,38	38	TypeIII-C,TypeIII-D,TypeIII-A,TypeIII-B,TypeI-B	cas3HD,DEDDh,cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PrimPol,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,csm6,csx1,csx20,csa3,WYL,c2c9_V-U4	NA|247aa|up_9|NZ_AP014510.1_254159_254900_-,NA|137aa|up_0|NZ_AP014510.1_262960_263371_-,csx22|192aa|down_5|NZ_AP014510.1_272797_273373_-	NA|247aa|up_9|NZ_AP014510.1_254159_254900_-	NA	NA|160aa|up_8|NZ_AP014510.1_255144_255624_+	TIGR00259, Putative_sgc_region_protein_SgcQ, membrane complex biogenesis protein, BtpA family	cmr6gr7|250aa|up_7|NZ_AP014510.1_255801_256551_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|115aa|up_6|NZ_AP014510.1_256547_256892_-	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5)	cmr4gr7|276aa|up_5|NZ_AP014510.1_256888_257716_-	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	cmr3gr5|354aa|up_4|NZ_AP014510.1_257731_258793_-	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|778aa|up_3|NZ_AP014510.1_258789_261123_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|444aa|up_2|NZ_AP014510.1_261119_262451_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	NA|103aa|up_1|NZ_AP014510.1_262489_262798_-	COG3339, COG3339, Uncharacterized conserved protein [Function unknown]	NA|137aa|up_0|NZ_AP014510.1_262960_263371_-	NA	NA|638aa|down_0|NZ_AP014510.1_267133_269047_-	smart00950, Piwi, This domain is found in the protein Piwi and its relatives	cas2|93aa|down_1|NZ_AP014510.1_269059_269338_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|333aa|down_2|NZ_AP014510.1_269343_270342_-	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	PrimPol|536aa|down_3|NZ_AP014510.1_270350_271958_-	COG4951, COG4951, Uncharacterized protein conserved in bacteria [Function unknown]	cas6|270aa|down_4|NZ_AP014510.1_271991_272801_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csx22|192aa|down_5|NZ_AP014510.1_272797_273373_-	NA	csm5gr7|366aa|down_6|NZ_AP014510.1_273369_274467_-	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	csm4gr5|279aa|down_7|NZ_AP014510.1_274463_275300_-	TIGR01903, Hypothetical_protein	csm3gr7|261aa|down_8|NZ_AP014510.1_275317_276100_-	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3	csm2gr11|139aa|down_9|NZ_AP014510.1_276096_276513_-	pfam03750, Csm2_III-A, Csm2 Type III-A
GCF_000828675.1_ASM82867v1	NZ_AP014510	Thermotoga profunda AZM34c06	3	1100827-1103530	3,3,3	PILER-CR,CRISPRCasFinder,CRT	no		cas3HD,DEDDh,cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PrimPol,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,csm6,csx1,csx20,csa3,WYL,c2c9_V-U4	Orphan	GTTTCCATCTCTTTCAGAGAGAACCTTCTTTCGGAC,GTTTCCATCTCTTTCAGAGAGAACCTTCTTTCGGAC,GTTTCCATCTCTTTCAGAGAGANCCTTCTTTCGGAC	36,36,36	0	0	NA	NA	NA:NA:NA	35,35,35	35	Orphan	cas3HD,DEDDh,cas3,cas5,cas7,cas8b1,cas2,cas1,cas4,cas6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,PrimPol,csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,csm6,csx1,csx20,csa3,WYL,c2c9_V-U4	NA|53aa|up_0|NZ_AP014510.1_1100296_1100455_-,NA	NA|420aa|up_9|NZ_AP014510.1_1092148_1093408_-	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning]	NA|169aa|up_8|NZ_AP014510.1_1093394_1093901_-	pfam16235, DUF4894, Domain of unknown function (DUF4894)	NA|631aa|up_7|NZ_AP014510.1_1093893_1095786_-	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|98aa|up_6|NZ_AP014510.1_1095776_1096070_-	pfam05258, DUF721, Protein of unknown function (DUF721)	NA|279aa|up_5|NZ_AP014510.1_1096066_1096903_-	pfam01063, Aminotran_4, Amino-transferase class IV	NA|438aa|up_4|NZ_AP014510.1_1096865_1098179_-	TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme	NA|149aa|up_3|NZ_AP014510.1_1098179_1098626_-	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain	NA|321aa|up_2|NZ_AP014510.1_1098635_1099598_-	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|246aa|up_1|NZ_AP014510.1_1099602_1100340_-	cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C	NA|53aa|up_0|NZ_AP014510.1_1100296_1100455_-	NA	NA|133aa|down_0|NZ_AP014510.1_1104304_1104703_+	cd03449, R_hydratase, (R)-hydratase [(R)-specific enoyl-CoA hydratase] catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway	NA|241aa|down_1|NZ_AP014510.1_1104699_1105422_+	COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]	NA|570aa|down_2|NZ_AP014510.1_1105422_1107132_+	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|400aa|down_3|NZ_AP014510.1_1107169_1108369_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|344aa|down_4|NZ_AP014510.1_1108539_1109571_+	PRK06840, PRK06840, 3-oxoacyl-ACP synthase	NA|434aa|down_5|NZ_AP014510.1_1109582_1110884_+	COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion]	NA|410aa|down_6|NZ_AP014510.1_1110904_1112134_+	cd06338, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions	NA|305aa|down_7|NZ_AP014510.1_1112186_1113101_+	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|304aa|down_8|NZ_AP014510.1_1113097_1114009_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|239aa|down_9|NZ_AP014510.1_1114023_1114740_+	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system
