The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010521	Clostridium botulinum strain NCTC 8550 chromosome, complete genome	3611898	438757	491919	3611898	coat,tRNA,protease	Clostridium_phage(23.08%)	51	NA	NA
WP_040968359.1|438757_439777_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.4	1.6e-64
WP_012449851.1|439779_440784_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_012451030.1|440947_442135_+|protease	trypsin-like serine protease	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.8	1.2e-15
WP_003370889.1|442298_442718_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_012449636.1|443042_444125_+	ethanolamine utilization protein EutH	NA	NA	NA	NA	NA
WP_012451456.1|444150_445275_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_012450092.1|445277_446399_-	glycosyltransferase family 4 protein	NA	B6EFC4	Stygiolobus_rod-shaped_virus	32.3	1.4e-05
WP_012449498.1|446545_447562_+|coat	CotS family spore coat protein	coat	NA	NA	NA	NA
WP_012449925.1|447536_448307_+|coat	spore coat protein	coat	NA	NA	NA	NA
WP_012451906.1|448395_449448_+|coat	CotS family spore coat protein	coat	NA	NA	NA	NA
WP_012450868.1|449641_450784_-	glycosyltransferase family 4 protein	NA	A0A1X9SJR9	Sulfolobus_islandicus_rod-shaped_virus	31.5	5.0e-06
WP_012450479.1|450893_451895_+|coat	CotS family spore coat protein	coat	NA	NA	NA	NA
WP_012451365.1|452219_453083_+	sporulation peptidase YabG	NA	NA	NA	NA	NA
WP_003369318.1|453270_453513_+	protein veg	NA	NA	NA	NA	NA
WP_012451197.1|453926_455489_+	DUF3794 domain-containing protein	NA	NA	NA	NA	NA
WP_012449460.1|455648_456494_+	cyanophycinase	NA	NA	NA	NA	NA
WP_012451943.1|456465_459084_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_012451223.1|459263_460106_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
WP_012450528.1|460167_460794_+	stage II sporulation protein R	NA	NA	NA	NA	NA
WP_012451190.1|460831_461824_+	DUF814 domain-containing protein	NA	NA	NA	NA	NA
WP_012450981.1|461893_462316_+	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_003370410.1|462550_462850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012449540.1|463033_464635_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	51.4	1.4e-150
WP_080316565.1|465037_466657_+	transcription termination factor Rho	NA	NA	NA	NA	NA
WP_012451175.1|466705_467812_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA	NA
WP_003374052.1|467953_468163_-	50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_012449758.1|468340_468928_+	thymidine kinase	NA	A0A249XXF6	Clostridium_phage	51.6	1.5e-51
WP_012451530.1|470990_472073_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_012449866.1|472155_472743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012450655.1|472761_473811_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.0	3.0e-45
WP_012451234.1|473933_474383_+	ribose 5-phosphate isomerase B	NA	NA	NA	NA	NA
WP_003372223.1|474428_475058_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_012451388.1|475167_475662_+	cytidine deaminase	NA	A7KUY9	Bacillus_phage	31.8	5.5e-10
WP_012449710.1|475790_476939_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	28.0	3.1e-27
WP_003374763.1|477068_478250_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA	NA
WP_012450323.1|479129_479495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012450700.1|479496_480177_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003369994.1|480208_480424_+	ATP synthase F0 subunit C	NA	NA	NA	NA	NA
WP_012424573.1|480474_480954_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003373046.1|480956_481496_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_003370679.1|481506_483021_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003369206.1|483061_483913_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_003373604.1|483928_485320_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003371522.1|485333_485738_+	ATP synthase F1 subunit epsilon	NA	NA	NA	NA	NA
WP_012450007.1|485897_486536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012450874.1|486593_487856_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_012451086.1|487973_489011_+	stage II sporulation protein D	NA	Q2XU88	Pseudomonas_phage	38.4	5.9e-38
WP_012450551.1|489169_489895_+	M23 family metallopeptidase	NA	V5R8R0	Arthrobacter_phage	30.9	5.5e-06
WP_003373770.1|489985_490240_+	sporulation transcriptional regulator SpoIIID	NA	M9Q261	Clostridium_phage	60.0	4.8e-18
WP_003374639.1|490319_491354_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_012450000.1|491397_491919_-|protease	spore protease YyaC	protease	A0A0A8WIQ6	Clostridium_phage	37.9	4.8e-28
>prophage 2
NZ_CP010521	Clostridium botulinum strain NCTC 8550 chromosome, complete genome	3611898	906890	929059	3611898	plate,tail	Clostridium_phage(75.0%)	26	NA	NA
WP_003370603.1|906890_908015_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	37.6	4.2e-37
WP_012450333.1|908107_908794_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_012450186.1|908911_909703_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_012450896.1|909759_909996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012449952.1|910481_910943_-	membrane protein	NA	A0A0A7RTX7	Clostridium_phage	50.7	1.6e-35
WP_012449566.1|910960_911326_-	helix-turn-helix transcriptional regulator	NA	A0A2I7SCV6	Paenibacillus_phage	49.2	1.8e-05
WP_012451074.1|911580_912090_+	helix-turn-helix domain-containing protein	NA	I2E8Y5	Clostridium_phage	45.3	5.3e-32
WP_012450549.1|912850_913267_+	hypothetical protein	NA	A0A0A7RTL8	Clostridium_phage	32.2	7.7e-05
WP_012450957.1|913412_914723_+	hypothetical protein	NA	A0A0A7S087	Clostridium_phage	54.8	4.9e-130
WP_012450094.1|914741_915209_+|tail	phage tail tube protein	tail	A0A0A7RVP1	Clostridium_phage	72.4	5.2e-58
WP_012449452.1|915508_915922_+	hypothetical protein	NA	A0A0A7RTN3	Clostridium_phage	62.2	4.4e-45
WP_012449442.1|916117_918067_+	hypothetical protein	NA	A0A0A7S0K9	Clostridium_phage	33.0	7.7e-63
WP_012451299.1|918066_918729_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0A7RW06	Clostridium_phage	57.7	4.9e-70
WP_012451227.1|918740_919712_+	hypothetical protein	NA	A0A0A7RTZ4	Clostridium_phage	56.8	3.4e-104
WP_012450668.1|919715_920045_+	DUF2577 domain-containing protein	NA	A0A0A7RTJ2	Clostridium_phage	53.8	6.2e-26
WP_012451369.1|920037_920445_+	DUF2634 domain-containing protein	NA	A0A0A7RTH1	Clostridium_phage	62.5	3.0e-38
WP_012450854.1|920447_921506_+|plate	baseplate J/gp47 family protein	plate	A0A0A7S0L4	Clostridium_phage	51.7	1.1e-90
WP_040968269.1|921506_923588_+	hypothetical protein	NA	A0A0A7S1G0	Clostridium_phage	34.6	1.6e-74
WP_012450245.1|923589_924204_+	YmfQ family protein	NA	A0A0A7RTU9	Clostridium_phage	57.1	1.1e-60
WP_040968270.1|925035_925380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080316563.1|925363_925498_+	XkdX family protein	NA	A0A0A7S0E7	Clostridium_phage	54.5	6.5e-06
WP_012450325.1|925611_925812_+	UviB-like protein	NA	A0A2H4JAI7	uncultured_Caudovirales_phage	67.7	6.5e-18
WP_012451124.1|925950_926745_+	glycoside hydrolase	NA	A0A1U9WQS3	Geobacillus_phage	42.7	7.7e-38
WP_012450478.1|926892_927057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012451324.1|927079_927646_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012450785.1|928012_929059_+	hypothetical protein	NA	A0A1P8CWN9	Bacillus_phage	44.2	9.9e-09
>prophage 3
NZ_CP010521	Clostridium botulinum strain NCTC 8550 chromosome, complete genome	3611898	1076726	1090480	3611898		Cyanophage(22.22%)	11	NA	NA
WP_012450048.1|1076726_1077407_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	2.1e-31
WP_003369129.1|1077557_1077713_+	cytochrome c551	NA	NA	NA	NA	NA
WP_012451322.1|1077817_1079074_+	chloride channel protein	NA	NA	NA	NA	NA
WP_003369960.1|1079177_1080068_+	oxidoreductase	NA	A0A1V0SDE7	Indivirus	26.8	3.8e-09
WP_012451813.1|1080327_1084074_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	30.9	7.4e-30
WP_003371243.1|1084482_1084962_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	45.5	6.3e-27
WP_003369697.1|1084961_1085669_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D7SLB8	Cyanophage	45.2	3.3e-48
WP_003373905.1|1085784_1087212_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.3	1.3e-54
WP_012450386.1|1087221_1088223_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SR00	Cyanophage	46.6	1.8e-68
WP_017826400.1|1088210_1088825_+	phosphoribosylglycinamide formyltransferase	NA	R9S626	Prochlorococcus_phage	36.1	1.6e-22
WP_012450774.1|1088974_1090480_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	E3SNU8	Prochlorococcus_phage	46.0	4.7e-36
>prophage 4
NZ_CP010521	Clostridium botulinum strain NCTC 8550 chromosome, complete genome	3611898	1831663	1861190	3611898	tail,plate,tRNA,protease,capsid	Bacteriophage(28.57%)	34	NA	NA
WP_012450019.1|1831663_1832593_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003374362.1|1832642_1832876_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_012451165.1|1832951_1834241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003370058.1|1834412_1835018_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	56.2	1.7e-13
WP_012449632.1|1835193_1835625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012451613.1|1835694_1836186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012450810.1|1836368_1836899_+	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_012449529.1|1837012_1838002_-	tyrosine recombinase XerC	NA	A0A2R2ZHE2	Clostridioides_phage	28.9	2.8e-21
WP_012450588.1|1838672_1839152_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_012451298.1|1839474_1840845_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_012449985.1|1841081_1841294_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_040968293.1|1842831_1843032_-	UviB-like protein	NA	A0A2H4JAI7	uncultured_Caudovirales_phage	70.8	2.0e-19
WP_040968294.1|1843105_1844110_-	hypothetical protein	NA	A0A1L2BYA9	Clostridium_phage	37.8	1.2e-11
WP_012450733.1|1846151_1846349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_040968296.1|1846361_1846700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_040968297.1|1846715_1848125_-|tail	phage tail protein	tail	A0A0A7RTP0	Clostridium_phage	67.3	8.3e-59
WP_012449486.1|1848124_1848787_-|tail	phage tail protein I	tail	A0A0C5AJ63	Bacteriophage	41.1	1.0e-22
WP_144311752.1|1848786_1849893_-	hypothetical protein	NA	A0A059WFM2	Vibrio_phage	37.0	1.2e-57
WP_012450959.1|1849930_1850251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012449967.1|1850253_1850796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012451795.1|1850800_1851001_-|plate	phage baseplate assembly protein V	plate	NA	NA	NA	NA
WP_144311749.1|1851000_1851924_-	hypothetical protein	NA	H7BVZ1	unidentified_phage	29.1	3.3e-32
WP_040968298.1|1851924_1852155_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_012449743.1|1852129_1854328_-	hypothetical protein	NA	A0A218KCH0	Bacillus_phage	34.3	2.4e-41
WP_012451061.1|1854493_1854817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012451782.1|1854886_1855408_-|tail	phage major tail tube protein	tail	A0A0C5AJ56	Bacteriophage	37.2	1.5e-21
WP_012451286.1|1855407_1856844_-	hypothetical protein	NA	A0A2K9V2R6	Faecalibacterium_phage	35.6	5.1e-80
WP_012450688.1|1856856_1857381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012449968.1|1857390_1857963_-	hypothetical protein	NA	A0A0C5AEN6	Bacteriophage	26.8	1.4e-09
WP_012451331.1|1857962_1858274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012450951.1|1858263_1858491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012450276.1|1858521_1859568_-|capsid	major capsid protein	capsid	A0A0C5ABI0	Bacteriophage	47.1	2.6e-86
WP_012449726.1|1859583_1859931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_079990991.1|1859930_1861190_-|protease	Clp protease ClpP	protease	A0A067ZG37	Vibrio_phage	36.4	5.7e-51
>prophage 5
NZ_CP010521	Clostridium botulinum strain NCTC 8550 chromosome, complete genome	3611898	1873388	1879928	3611898		Clostridium_phage(33.33%)	11	NA	NA
WP_012449837.1|1873388_1873601_-	hypothetical protein	NA	A0A0A7RUN7	Clostridium_phage	60.9	6.2e-19
WP_012451283.1|1873719_1873986_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012450636.1|1874183_1874510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_040968299.1|1874585_1874771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012449973.1|1875200_1876142_-	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	61.8	1.1e-64
WP_012450314.1|1876254_1877403_-	ParB N-terminal domain-containing protein	NA	A0A1D6Z271	Staphylococcus_phage	34.2	3.6e-12
WP_012450952.1|1877387_1878143_-	ParA family protein	NA	A0A1X9IGI7	Lactococcus_phage	29.0	1.6e-21
WP_012451023.1|1878355_1878529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012451770.1|1878557_1879034_-	hypothetical protein	NA	A0A2K9V3J3	Faecalibacterium_phage	40.8	1.0e-21
WP_012451011.1|1879155_1879347_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012451504.1|1879523_1879928_+	helix-turn-helix domain-containing protein	NA	A8ATJ9	Listeria_phage	44.8	2.7e-10
