assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000815185.1_ASM81518v1	NZ_CP010409	Xanthomonas sacchari strain R1 chromosome, complete genome	1	1358858-1358935	1	CRISPRCasFinder	no		DinG,DEDDh,csa3,cas3,Cas9_archaeal,WYL	Orphan	CCTTCTCCCGAAGGGAGAAGGAAC	24	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,csa3,cas3,Cas9_archaeal,WYL	NA,NA|153aa|down_2|NZ_CP010409.1_1360874_1361333_-,NA|61aa|down_7|NZ_CP010409.1_1366527_1366710_-	NA|611aa|up_9|NZ_CP010409.1_1346790_1348623_-	COG4805, COG4805, Uncharacterized protein conserved in bacteria [Function unknown]	NA|403aa|up_8|NZ_CP010409.1_1348705_1349914_-	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|531aa|up_7|NZ_CP010409.1_1349910_1351503_-	cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde Dehydrogenase	NA|302aa|up_6|NZ_CP010409.1_1351504_1352410_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|457aa|up_5|NZ_CP010409.1_1352406_1353777_-	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase	NA|83aa|up_4|NZ_CP010409.1_1353769_1354018_-	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain	NA|367aa|up_3|NZ_CP010409.1_1354014_1355115_-	pfam01266, DAO, FAD dependent oxidoreductase	NA|314aa|up_2|NZ_CP010409.1_1355111_1356053_-	pfam05544, Pro_racemase, Proline racemase	NA|236aa|up_1|NZ_CP010409.1_1356225_1356933_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|454aa|up_0|NZ_CP010409.1_1357301_1358663_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|354aa|down_0|NZ_CP010409.1_1358947_1360009_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|93aa|down_1|NZ_CP010409.1_1360050_1360329_+	PRK05408, PRK05408, oxidative damage protection protein; Provisional	NA|153aa|down_2|NZ_CP010409.1_1360874_1361333_-	NA	NA|304aa|down_3|NZ_CP010409.1_1361452_1362364_-	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase	NA|620aa|down_4|NZ_CP010409.1_1362421_1364281_-	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|362aa|down_5|NZ_CP010409.1_1364432_1365518_+	TIGR01388, Ribonuclease_D, ribonuclease D	NA|135aa|down_6|NZ_CP010409.1_1365622_1366027_-	COG2916, Hns, DNA-binding protein H-NS [General function prediction only]	NA|61aa|down_7|NZ_CP010409.1_1366527_1366710_-	NA	NA|174aa|down_8|NZ_CP010409.1_1366794_1367316_-	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|561aa|down_9|NZ_CP010409.1_1367327_1369010_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein
GCF_000815185.1_ASM81518v1	NZ_CP010409	Xanthomonas sacchari strain R1 chromosome, complete genome	2	1802557-1802644	2	CRISPRCasFinder	no		DinG,DEDDh,csa3,cas3,Cas9_archaeal,WYL	Orphan	ACCCTCACCCCCTGCCCCTCTCCCG	25	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,csa3,cas3,Cas9_archaeal,WYL	NA,NA|174aa|down_3|NZ_CP010409.1_1812189_1812711_+	NA|324aa|up_9|NZ_CP010409.1_1785923_1786895_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|798aa|up_8|NZ_CP010409.1_1787668_1790062_-	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]	NA|434aa|up_7|NZ_CP010409.1_1790201_1791503_-	COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]	NA|465aa|up_6|NZ_CP010409.1_1791489_1792884_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|814aa|up_5|NZ_CP010409.1_1792966_1795408_-	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|257aa|up_4|NZ_CP010409.1_1795404_1796175_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|417aa|up_3|NZ_CP010409.1_1796196_1797447_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|314aa|up_2|NZ_CP010409.1_1797594_1798536_-	cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins	NA|971aa|up_1|NZ_CP010409.1_1798555_1801468_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|207aa|up_0|NZ_CP010409.1_1801719_1802340_-	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive	NA|1646aa|down_0|NZ_CP010409.1_1802664_1807602_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|332aa|down_1|NZ_CP010409.1_1808270_1809266_-	cd00455, nuc_hydro, nuc_hydro: Nucleoside hydrolases	NA|740aa|down_2|NZ_CP010409.1_1809334_1811554_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|174aa|down_3|NZ_CP010409.1_1812189_1812711_+	NA	NA|398aa|down_4|NZ_CP010409.1_1812771_1813965_-	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF	NA|872aa|down_5|NZ_CP010409.1_1814536_1817152_-	TIGR02333, 2-methyl_citrate_dehydratase_Fe-S_dependent_AcnD, 2-methylisocitrate dehydratase, Fe/S-dependent	NA|388aa|down_6|NZ_CP010409.1_1817466_1818630_-	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|201aa|down_7|NZ_CP010409.1_1818670_1819273_-	pfam06210, DUF1003, Protein of unknown function (DUF1003)	NA|296aa|down_8|NZ_CP010409.1_1819304_1820192_-	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|414aa|down_9|NZ_CP010409.1_1820311_1821553_+	cd06102, citrate_synt_like_2, Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle)
GCF_000815185.1_ASM81518v1	NZ_CP010409	Xanthomonas sacchari strain R1 chromosome, complete genome	3	3665267-3665621	3,1	CRISPRCasFinder,CRT	no		DinG,DEDDh,csa3,cas3,Cas9_archaeal,WYL	Orphan	TTGACGCTGCCGTTGACCGTTTCCA,GATGCNGCCGTTGACCGT	25,18	0	0	NA	NA	NA:NA	6,6	6	Orphan	DinG,DEDDh,csa3,cas3,Cas9_archaeal,WYL	NA|224aa|up_9|NZ_CP010409.1_3646772_3647444_-,NA|76aa|up_5|NZ_CP010409.1_3650569_3650797_+,NA	NA|224aa|up_9|NZ_CP010409.1_3646772_3647444_-	NA	NA|220aa|up_8|NZ_CP010409.1_3647462_3648122_-	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated	NA|267aa|up_7|NZ_CP010409.1_3648256_3649057_+	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|455aa|up_6|NZ_CP010409.1_3649053_3650418_+	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily	NA|76aa|up_5|NZ_CP010409.1_3650569_3650797_+	NA	NA|377aa|up_4|NZ_CP010409.1_3650812_3651943_-	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed	NA|485aa|up_3|NZ_CP010409.1_3652032_3653487_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|404aa|up_2|NZ_CP010409.1_3653655_3654867_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|356aa|up_1|NZ_CP010409.1_3661429_3662497_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|581aa|up_0|NZ_CP010409.1_3663207_3664950_-	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|409aa|down_0|NZ_CP010409.1_3665881_3667108_+	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|495aa|down_1|NZ_CP010409.1_3667212_3668697_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|329aa|down_2|NZ_CP010409.1_3668760_3669747_-	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases	NA|107aa|down_3|NZ_CP010409.1_3669751_3670072_-	pfam08850, DUF1820, Domain of unknown function (DUF1820)	NA|231aa|down_4|NZ_CP010409.1_3670107_3670800_-	pfam01694, Rhomboid, Rhomboid family	NA|447aa|down_5|NZ_CP010409.1_3671045_3672386_+	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX)	NA|407aa|down_6|NZ_CP010409.1_3672527_3673748_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|1065aa|down_7|NZ_CP010409.1_3673847_3677042_-	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA	NA|159aa|down_8|NZ_CP010409.1_3677305_3677782_+	pfam10003, DUF2244, Integral membrane protein (DUF2244)	NA|331aa|down_9|NZ_CP010409.1_3677802_3678795_+	cd13912, CcO_II_C, C-terminal domain of Cytochrome c Oxidase subunit II
