assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000814145.2_ASM81414v2	NZ_CP010371	Escherichia coli strain 6409 chromosome, complete genome	1	476047-476191	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|28aa|up_2|NZ_CP010371.1_473917_474001_+,NA	NA|372aa|up_9|NZ_CP010371.1_468673_469789_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP010371.1_469805_470615_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|153aa|up_7|NZ_CP010371.1_470734_471193_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP010371.1_471375_471900_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP010371.1_471949_472141_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP010371.1_472398_473076_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP010371.1_473147_473432_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP010371.1_473917_474001_+	NA	NA|304aa|up_1|NZ_CP010371.1_474078_474990_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP010371.1_475114_476023_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP010371.1_476267_477452_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP010371.1_477577_480724_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP010371.1_480720_481923_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP010371.1_482112_482802_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP010371.1_482859_484155_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP010371.1_484561_485881_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP010371.1_485956_487330_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP010371.1_487485_489303_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP010371.1_489307_489889_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP010371.1_489981_491052_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_000814145.2_ASM81414v2	NZ_CP010371	Escherichia coli strain 6409 chromosome, complete genome	2	616270-616366	2	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|485aa|up_9|NZ_CP010371.1_602502_603957_+	PRK11375, PRK11375, putative allantoin permease	NA|454aa|up_8|NZ_CP010371.1_604016_605378_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_7|NZ_CP010371.1_605434_606736_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_6|NZ_CP010371.1_606757_607903_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_5|NZ_CP010371.1_608130_608916_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_4|NZ_CP010371.1_608926_610162_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_3|NZ_CP010371.1_610183_611233_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|420aa|up_2|NZ_CP010371.1_613260_614520_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP010371.1_614530_615346_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP010371.1_615342_616236_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP010371.1_616430_617498_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP010371.1_617494_618004_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP010371.1_618121_618844_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP010371.1_618846_619341_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP010371.1_619514_620900_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP010371.1_620935_621457_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP010371.1_621564_621777_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP010371.1_621778_622645_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP010371.1_623115_623658_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|347aa|down_9|NZ_CP010371.1_626745_627786_+	PRK15199, fimH, type 1 fimbrin D-mannose specific adhesin FimH
GCF_000814145.2_ASM81414v2	NZ_CP010371	Escherichia coli strain 6409 chromosome, complete genome	3	2426054-2426180	3	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|395aa|up_9|NZ_CP010371.1_2404961_2406146_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP010371.1_2406219_2406996_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP010371.1_2407000_2408650_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1505aa|up_6|NZ_CP010371.1_2408650_2413165_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP010371.1_2413188_2413812_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP010371.1_2413808_2415497_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP010371.1_2415645_2418273_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP010371.1_2418419_2419142_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP010371.1_2419269_2423022_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP010371.1_2423717_2426003_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP010371.1_2426236_2427367_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP010371.1_2427366_2427621_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP010371.1_2427674_2428325_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP010371.1_2428787_2429864_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP010371.1_2429868_2431227_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP010371.1_2431499_2433128_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP010371.1_2433117_2434377_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP010371.1_2434373_2435564_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NZ_CP010371.1_2435756_2436656_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP010371.1_2436668_2436854_+	PRK09956, PRK09956, ISNCY family transposase
GCF_000814145.2_ASM81414v2	NZ_CP010371	Escherichia coli strain 6409 chromosome, complete genome	4	2931644-2932283	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,7	10	TypeI-E	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA	NA|254aa|up_9|NZ_CP010371.1_2923455_2924217_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP010371.1_2924197_2925247_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP010371.1_2925243_2925723_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP010371.1_2925722_2926433_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP010371.1_2926451_2926763_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP010371.1_2926956_2927280_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP010371.1_2927329_2927935_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP010371.1_2927934_2929362_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP010371.1_2929363_2930272_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP010371.1_2930523_2931561_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP010371.1_2932388_2932673_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP010371.1_2932674_2933592_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP010371.1_2933607_2934207_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP010371.1_2934193_2934868_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP010371.1_2934870_2935962_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP010371.1_2935974_2936457_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|495aa|down_6|NZ_CP010371.1_2936449_2937934_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP010371.1_2938372_2941039_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP010371.1_2941397_2942132_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP010371.1_2942206_2943919_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_000814145.2_ASM81414v2	NZ_CP010371	Escherichia coli strain 6409 chromosome, complete genome	5	2957834-2958227	2,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Unclear	GGTTTATCCCCGCTGGCGCGGGGAAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	26,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA,NA|47aa|down_1|NZ_CP010371.1_2959376_2959517_+	NA|424aa|up_9|NZ_CP010371.1_2946476_2947748_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP010371.1_2947738_2947999_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP010371.1_2948015_2948591_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP010371.1_2948738_2949599_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP010371.1_2949595_2950375_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP010371.1_2950352_2951762_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP010371.1_2951783_2953238_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP010371.1_2953307_2954093_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP010371.1_2954411_2955689_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP010371.1_2955715_2957194_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP010371.1_2958566_2959238_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP010371.1_2959376_2959517_+	NA	NA|291aa|down_2|NZ_CP010371.1_2959530_2960403_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP010371.1_2960462_2961761_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP010371.1_2961848_2963486_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP010371.1_2963713_2964505_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP010371.1_2964575_2964911_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP010371.1_2964910_2965159_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP010371.1_2965236_2967471_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP010371.1_2967518_2968820_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_000814145.2_ASM81414v2	NZ_CP010371	Escherichia coli strain 6409 chromosome, complete genome	6	4580721-4580868	6	CRISPRCasFinder	no		DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	Orphan	CGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,RT	NA|532aa|up_6|NZ_CP010371.1_4572033_4573629_+,NA	NA|238aa|up_9|NZ_CP010371.1_4569936_4570650_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP010371.1_4570720_4571314_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP010371.1_4571458_4571911_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|532aa|up_6|NZ_CP010371.1_4572033_4573629_+	NA	NA|335aa|up_5|NZ_CP010371.1_4573684_4574689_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP010371.1_4574850_4575267_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP010371.1_4575312_4575816_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP010371.1_4576000_4577197_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP010371.1_4577252_4580108_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP010371.1_4580107_4580551_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP010371.1_4580904_4582416_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP010371.1_4582682_4583783_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP010371.1_4583782_4584865_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|502aa|down_3|NZ_CP010371.1_4585025_4586531_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP010371.1_4586658_4587678_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|422aa|down_5|NZ_CP010371.1_4588121_4589387_+	PRK09692, PRK09692, integrase; Provisional	NA|384aa|down_6|NZ_CP010371.1_4593599_4594751_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|260aa|down_7|NZ_CP010371.1_4595941_4596721_-	PRK09183, PRK09183, transposase/IS protein; Provisional	NA|341aa|down_8|NZ_CP010371.1_4596720_4597743_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|638aa|down_9|NZ_CP010371.1_4598776_4600690_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
