The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP010313	Bradyrhizobium japonicum strain E109 chromosome, complete genome	9224208	5094349	5104535	9224208	tRNA	uncultured_Mediterranean_phage(88.89%)	12	NA	NA
WP_014495048.1|5094349_5095378_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.0	1.6e-22
WP_014495049.1|5095374_5096214_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	37.1	3.3e-31
WP_014495050.1|5096235_5096985_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	49.7	1.2e-43
WP_014495051.1|5097152_5097389_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	63.6	5.5e-08
WP_014495052.1|5097475_5098015_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_014495053.1|5098011_5098824_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	48.4	2.4e-55
WP_014495054.1|5099016_5100348_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	46.8	1.6e-96
WP_014495055.1|5100545_5100908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014495056.1|5101012_5101780_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	38.4	1.7e-37
WP_014495057.1|5101783_5102155_-	response regulator	NA	NA	NA	NA	NA
WP_039156902.1|5102425_5103043_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	50.6	2.5e-28
WP_014495059.1|5103152_5104535_+	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	NA	Q8SBN9	Clostridium_phage	40.9	2.4e-18
>prophage 2
NZ_CP010313	Bradyrhizobium japonicum strain E109 chromosome, complete genome	9224208	5334853	5343259	9224208	tRNA,tail	Arthrobacter_phage(28.57%)	9	NA	NA
WP_014495288.1|5334853_5335396_+|tail	tail protein	tail	A0A0U4JXW2	Arthrobacter_phage	36.5	1.1e-16
WP_014495289.1|5335475_5336003_+|tail	phage tail protein	tail	A0A0U4JXW2	Arthrobacter_phage	37.5	2.4e-19
WP_014495290.1|5336051_5336594_+|tail	phage tail protein	tail	E3T4R8	Cafeteria_roenbergensis_virus	31.1	7.7e-13
WP_028169517.1|5336630_5337125_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014495292.1|5337121_5338078_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014495293.1|5338230_5339493_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	35.2	2.2e-50
WP_014495294.1|5339495_5340182_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	38.7	9.7e-29
WP_014495295.1|5340178_5341225_+	DNA polymerase III subunit delta'	NA	S5WKH4	Pseudomonas_phage	27.2	3.7e-11
WP_014495296.1|5341273_5343259_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	39.6	5.5e-101
>prophage 3
NZ_CP010313	Bradyrhizobium japonicum strain E109 chromosome, complete genome	9224208	7045493	7056101	9224208		Escherichia_phage(42.86%)	8	NA	NA
WP_014496889.1|7045493_7048673_-	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.8	8.1e-70
WP_014496890.1|7048916_7050608_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	53.1	3.0e-15
WP_014496891.1|7050778_7052056_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	41.2	1.7e-71
WP_014496892.1|7052052_7052835_-	hydroxypyruvate isomerase family protein	NA	NA	NA	NA	NA
WP_014496893.1|7052851_7053769_-	NAD-binding protein	NA	A0A077SLF7	Escherichia_phage	49.8	1.1e-67
WP_028169752.1|7053874_7054558_+	aldolase	NA	A0A077SK32	Escherichia_phage	49.3	5.1e-46
WP_014496895.1|7054681_7055386_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.2	2.9e-12
WP_014496896.1|7055369_7056101_-	ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	28.2	1.5e-11
>prophage 4
NZ_CP010313	Bradyrhizobium japonicum strain E109 chromosome, complete genome	9224208	8091273	8175632	9224208	protease,transposase	Acinetobacter_phage(20.0%)	60	NA	NA
WP_011084854.1|8091273_8092170_-|protease	YopT-type cysteine protease domain-containing protein	protease	NA	NA	NA	NA
WP_014497798.1|8096697_8097942_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_014497799.1|8099450_8099684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497800.1|8100880_8101894_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	35.5	5.0e-50
WP_011084844.1|8102085_8102319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_133415003.1|8103191_8103452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084842.1|8103448_8104228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497802.1|8104255_8105566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018647484.1|8106035_8106503_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497804.1|8107046_8107724_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA	NA
WP_011084838.1|8107708_8108932_-	GFA family protein	NA	NA	NA	NA	NA
WP_011084835.1|8110071_8110938_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_011084834.1|8111455_8113273_-	nif-specific transcriptional activator NifA	NA	NA	NA	NA	NA
WP_011084833.1|8113456_8114293_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_026312623.1|8115021_8116008_-	nodulation protein NodZ	NA	NA	NA	NA	NA
WP_028160183.1|8116299_8117946_-	nodulation protein	NA	A0A222YXH1	Synechococcus_phage	31.9	1.8e-44
WP_035667843.1|8117942_8118338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084828.1|8118581_8119370_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_011084827.1|8119373_8120294_-	nodulation factor ABC transporter ATP-binding protein NodI	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	5.5e-27
WP_014497812.1|8120295_8122005_-	nodulation protein NodU	NA	M1ICZ5	Pelagibacter_phage	29.3	1.2e-27
WP_014497813.1|8122018_8122648_-	methyltransferase	NA	NA	NA	NA	NA
WP_011084824.1|8122574_8124032_-	chitooligosaccharide synthase NodC	NA	NA	NA	NA	NA
WP_011084823.1|8124046_8124706_-	chitooligosaccharide deacetylase NodB	NA	NA	NA	NA	NA
WP_011084822.1|8124702_8125335_-	NodA family N-acyltransferase	NA	NA	NA	NA	NA
WP_018646994.1|8126128_8127073_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011084818.1|8127706_8128699_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014497819.1|8129285_8129495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071917715.1|8129653_8130331_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_028154217.1|8130755_8131046_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_071916446.1|8131119_8131746_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014497821.1|8133224_8133587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084811.1|8134550_8134796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084809.1|8135417_8136344_+	porin family protein	NA	NA	NA	NA	NA
WP_108914088.1|8136691_8136817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084806.1|8138075_8138792_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_014497827.1|8140434_8141772_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_011084803.1|8142180_8142699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_161170727.1|8143112_8143469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084800.1|8143913_8145584_+	carbohydrate porin	NA	NA	NA	NA	NA
WP_011084799.1|8145715_8146096_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_014497829.1|8146103_8146739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497831.1|8148955_8149900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084794.1|8152084_8153125_-	pectinesterase	NA	NA	NA	NA	NA
WP_011084793.1|8153343_8154876_-	polygalacturonase	NA	NA	NA	NA	NA
WP_011084792.1|8155593_8155911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084791.1|8156398_8157568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497835.1|8157570_8161005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497836.1|8161001_8161640_-	DUF4194 domain-containing protein	NA	NA	NA	NA	NA
WP_028143997.1|8161629_8163186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039228593.1|8163382_8164447_+|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084786.1|8164750_8165002_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011084785.1|8165001_8166321_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_011084781.1|8167780_8168146_+	Nif11 family protein	NA	NA	NA	NA	NA
WP_028143999.1|8168862_8169330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084778.1|8169376_8169769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497841.1|8170469_8172449_+	RiPP maturation radical SAM protein 1	NA	NA	NA	NA	NA
WP_011084776.1|8172762_8172990_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497842.1|8173373_8174720_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	42.1	1.4e-44
WP_014497843.1|8175096_8175252_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_011084772.1|8175332_8175632_-|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP010313	Bradyrhizobium japonicum strain E109 chromosome, complete genome	9224208	8188605	8279687	9224208	transposase	Paenibacillus_phage(20.0%)	54	NA	NA
WP_144402458.1|8188605_8189366_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
WP_028144470.1|8189786_8190623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084514.1|8190640_8191705_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_014497856.1|8195070_8195523_+	GNAT family N-acetyltransferase	NA	C5MKY6	Human_cytomegalovirus	26.9	8.6e-10
WP_039145738.1|8196453_8198211_-	E3 ubiquitin--protein ligase	NA	NA	NA	NA	NA
WP_014497862.1|8199638_8200088_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014497863.1|8200303_8201374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039229681.1|8202118_8202520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497865.1|8204002_8205145_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_028170445.1|8205677_8206439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497867.1|8207062_8207266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497868.1|8207375_8208158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039229687.1|8208438_8208846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141379392.1|8209168_8209645_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497871.1|8210845_8211025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080593923.1|8211058_8211391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080593924.1|8211483_8211942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497873.1|8212185_8213151_-	D-2-hydroxyacid dehydrogenase	NA	M1I636	Acanthocystis_turfacea_Chlorella_virus	27.4	2.4e-09
WP_014497875.1|8213604_8215005_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_028170442.1|8215016_8216495_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_014497877.1|8216683_8217160_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_141379390.1|8217858_8218941_-	polyamine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.1	2.9e-27
WP_014497879.1|8218996_8219713_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_014497881.1|8220670_8220976_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	52.4	2.4e-19
WP_028170441.1|8220959_8221370_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_039228606.1|8223310_8224321_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_014497888.1|8224317_8225037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497889.1|8225038_8227708_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	NA	NA	NA	NA	NA
WP_014497890.1|8227727_8228342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497891.1|8228348_8229305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160321084.1|8229321_8230059_-	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
WP_014497893.1|8231497_8231923_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014497894.1|8232496_8233591_-	KamA family radical SAM protein	NA	NA	NA	NA	NA
WP_014497898.1|8238342_8239707_-	insulinase family protein	NA	NA	NA	NA	NA
WP_038945462.1|8239703_8241101_-	insulinase family protein	NA	A0A2L2DIR8	Acanthamoeba_polyphaga_mimivirus	24.1	1.3e-27
WP_074076609.1|8241906_8242752_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	34.6	7.2e-34
WP_080769320.1|8242712_8244263_-|transposase	IS21-like element ISBj11 family transposase	transposase	NA	NA	NA	NA
WP_028170463.1|8245295_8247128_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.7	4.9e-27
WP_011084689.1|8251662_8251938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084688.1|8252622_8254077_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_011084685.1|8256370_8257132_-	LuxR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011084684.1|8258256_8258871_-	J domain-containing protein	NA	NA	NA	NA	NA
WP_011084682.1|8260277_8261606_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084680.1|8262290_8262707_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_144038029.1|8263446_8264207_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	34.7	2.7e-08
WP_011084678.1|8264589_8266398_+	outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_014497914.1|8268554_8269130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_028170457.1|8272397_8273789_+	MFS transporter	NA	NA	NA	NA	NA
WP_011084669.1|8274178_8274385_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084668.1|8274938_8275481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084665.1|8276620_8277166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084664.1|8277273_8277657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084662.1|8278240_8278534_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_011084661.1|8278676_8279687_+|transposase	IS481 family transposase	transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	64.8	1.1e-126
>prophage 6
NZ_CP010313	Bradyrhizobium japonicum strain E109 chromosome, complete genome	9224208	8305202	8348922	9224208	transposase	Acidithiobacillus_phage(20.0%)	36	NA	NA
WP_039228614.1|8305202_8306549_+|transposase	IS5 family transposase	transposase	K4ICS3	Acidithiobacillus_phage	42.8	9.4e-44
WP_011084638.1|8306678_8306885_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497933.1|8307719_8308121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084514.1|8309124_8310189_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_039228617.1|8310896_8311928_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_085971921.1|8313760_8314520_+|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
WP_014497939.1|8314530_8315568_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_011084629.1|8315564_8316386_-	type III secretion system export apparatus protein SctT	NA	NA	NA	NA	NA
WP_011084628.1|8316396_8316672_-	translocation protein	NA	NA	NA	NA	NA
WP_011084627.1|8316674_8317340_-	type III secretion system export apparatus protein SctR	NA	NA	NA	NA	NA
WP_011084626.1|8317332_8318454_-	type III secretion system cytoplasmic ring protein SctQ	NA	NA	NA	NA	NA
WP_011084625.1|8318450_8318987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084624.1|8318962_8320318_-	type III secretion system ATPase SctN	NA	NA	NA	NA	NA
WP_011084623.1|8320314_8320935_-	type III secretion system stator protein SctL	NA	NA	NA	NA	NA
WP_011084622.1|8320931_8321570_-	nodulation protein	NA	NA	NA	NA	NA
WP_014497940.1|8321581_8322445_-	type III secretion inner membrane ring lipoprotein SctJ	NA	NA	NA	NA	NA
WP_026312858.1|8322453_8322954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_035668374.1|8323208_8323829_+	nodulation protein NolW	NA	NA	NA	NA	NA
WP_011084616.1|8324978_8325182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_039228620.1|8325752_8326817_-|transposase	IS630-like element ISRj1 family transposase	transposase	NA	NA	NA	NA
WP_014497946.1|8326971_8328426_-	DUF1521 domain-containing protein	NA	NA	NA	NA	NA
WP_014497947.1|8328676_8329237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084613.1|8329334_8329643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497948.1|8329685_8329877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084612.1|8329993_8330887_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084611.1|8330920_8331457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084610.1|8331459_8331888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011084609.1|8331897_8333997_+	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA	NA
WP_014497949.1|8334027_8334618_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_011084606.1|8335185_8335608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497950.1|8336722_8338069_+	insulinase family protein	NA	K7Z7Q1	Megavirus	26.3	1.2e-17
WP_011084600.1|8340047_8340797_+	hypothetical protein	NA	A0A1X9SH03	Bradyrhizobium_phage	43.6	4.4e-43
WP_011084599.1|8340851_8341571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161170740.1|8344123_8344420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084589.1|8346445_8347597_+	molybdenum ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_014497957.1|8347653_8348922_+|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	7.1e-94
>prophage 7
NZ_CP010313	Bradyrhizobium japonicum strain E109 chromosome, complete genome	9224208	8380342	8425480	9224208	transposase	Shigella_phage(16.67%)	29	NA	NA
WP_011084514.1|8380342_8381407_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084548.1|8381550_8381745_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_011084547.1|8382282_8383395_-	alanine dehydrogenase	NA	NA	NA	NA	NA
WP_011084546.1|8383779_8384826_-	hydrogenase expression/formation protein HypE	NA	NA	NA	NA	NA
WP_028154318.1|8384822_8385965_-	hydrogenase formation protein HypD	NA	NA	NA	NA	NA
WP_011084544.1|8385961_8387707_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_085967575.1|8387990_8389120_-|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_011084541.1|8389968_8390310_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA	NA
WP_011084538.1|8391491_8392043_-	hydrogenase expression/formation protein	NA	NA	NA	NA	NA
WP_011084536.1|8392920_8393211_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA	NA
WP_014497983.1|8393846_8394539_-	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA	NA
WP_011084532.1|8394543_8396334_-	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA	NA
WP_014497984.1|8396347_8397439_-	hydrogenase small subunit	NA	NA	NA	NA	NA
WP_011084530.1|8398084_8398696_-	molybdenum ABC transporter permease	NA	NA	NA	NA	NA
WP_011084529.1|8399803_8401120_+	C4-dicarboxylate transporter DctA	NA	NA	NA	NA	NA
WP_085967392.1|8401242_8402003_-|transposase	IS5 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	4.7e-08
WP_011084514.1|8402078_8403143_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_011084527.1|8404021_8406691_+	PAS domain S-box protein	NA	A0A1V0SGX0	Hokovirus	25.0	1.9e-08
WP_011084526.1|8406687_8407371_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_014497989.1|8407455_8407842_+	response regulator	NA	NA	NA	NA	NA
WP_039228626.1|8408639_8409908_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	46.2	5.5e-94
WP_014497992.1|8411248_8411980_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	53.6	4.9e-63
WP_011084521.1|8411988_8412567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_039228631.1|8413024_8416594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014497994.1|8416866_8419119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011084515.1|8419538_8421335_+	recombinase family protein	NA	NA	NA	NA	NA
WP_011084514.1|8421382_8422447_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_028144469.1|8422420_8423719_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_014497998.1|8423932_8425480_-|transposase	IS66 family transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	38.4	1.8e-83
>prophage 8
NZ_CP010313	Bradyrhizobium japonicum strain E109 chromosome, complete genome	9224208	9094765	9118245	9224208	integrase,transposase	Paenibacillus_phage(50.0%)	22	9088078:9088093	9132724:9132739
9088078:9088093	attL	GCCGGCGACGGCCGCG	NA	NA	NA	NA
WP_011090895.1|9094765_9096007_+|integrase	site-specific integrase	integrase	A0A248SL35	Klebsiella_phage	66.8	1.9e-160
WP_014498593.1|9096003_9097347_+	DUF1016 domain-containing protein	NA	Q9JMP5	Wolbachia_phage	55.5	6.2e-112
WP_011090897.1|9097348_9098602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090898.1|9098692_9101182_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014498594.1|9101178_9101403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498595.1|9101492_9102269_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014498596.1|9102455_9103010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052264145.1|9103128_9104934_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_014498128.1|9104941_9105715_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	35.2	3.3e-09
WP_011085265.1|9105790_9106900_+|transposase	IS630-like element ISBj5 family transposase	transposase	NA	NA	NA	NA
WP_014498598.1|9106910_9107675_-|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	49.0	4.7e-24
WP_011088795.1|9108233_9109298_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_009734588.1|9109555_9110140_-	DUF308 domain-containing protein	NA	NA	NA	NA	NA
WP_011090904.1|9110404_9111013_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014498601.1|9111172_9111820_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_011090906.1|9111924_9112803_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011090907.1|9112799_9113648_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_026192141.1|9113753_9114284_+	VOC family protein	NA	NA	NA	NA	NA
WP_016846434.1|9114571_9114856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498603.1|9115319_9115673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498605.1|9117306_9117591_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_014498606.1|9117915_9118245_+|transposase	transposase	transposase	NA	NA	NA	NA
9132724:9132739	attR	CGCGGCCGTCGCCGGC	NA	NA	NA	NA
>prophage 9
NZ_CP010313	Bradyrhizobium japonicum strain E109 chromosome, complete genome	9224208	9130789	9187780	9224208	transposase	Acidithiobacillus_phage(25.0%)	41	NA	NA
WP_011084703.1|9130789_9132301_-|transposase	ISNCY-like element ISBj12 family transposase	transposase	NA	NA	NA	NA
WP_080769320.1|9132528_9134079_+|transposase	IS21-like element ISBj11 family transposase	transposase	NA	NA	NA	NA
WP_080769322.1|9134039_9134855_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	34.5	3.5e-33
WP_011084703.1|9134892_9136404_+|transposase	ISNCY-like element ISBj12 family transposase	transposase	NA	NA	NA	NA
WP_011084668.1|9137775_9138318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498652.1|9139287_9139554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090921.1|9139789_9140194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014498651.1|9140366_9140822_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011090930.1|9143871_9145005_-	FAD-dependent oxidoreductase	NA	A0A2K9L3K5	Tupanvirus	24.4	3.1e-08
WP_014497929.1|9148845_9149556_+	ATP-binding protein	NA	K4HZD4	Acidithiobacillus_phage	53.6	4.8e-63
WP_162130962.1|9150596_9150923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090941.1|9151234_9151585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090946.1|9153068_9154115_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_014498636.1|9154105_9154969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090948.1|9154965_9156717_-	gamma-glutamyltranspeptidase	NA	NA	NA	NA	NA
WP_085967575.1|9160432_9161561_+|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_011090953.1|9161965_9162322_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_011084509.1|9162872_9163217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014497999.1|9163741_9163963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085971921.1|9164319_9165080_-|transposase	IS5-like element ISBj2 family transposase	transposase	A0A0N9SJT9	Paenibacillus_phage	35.5	3.6e-08
WP_011084508.1|9165368_9165626_+	WGR domain-containing protein	NA	NA	NA	NA	NA
WP_014498629.1|9171584_9171842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090956.1|9171909_9172152_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_011090957.1|9172257_9172500_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_016846398.1|9172496_9172736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498627.1|9172739_9172982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090958.1|9173885_9174170_+	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
WP_154694125.1|9175041_9175266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014498624.1|9175817_9176048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011090960.1|9176433_9176637_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	49.2	1.1e-09
WP_014498623.1|9176653_9178084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071916953.1|9178037_9178217_+	DUF3892 domain-containing protein	NA	NA	NA	NA	NA
WP_011090962.1|9178220_9178673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090963.1|9178687_9178903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090964.1|9178899_9179178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090966.1|9179931_9180465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090967.1|9180662_9181271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011090968.1|9181615_9183043_-	hypothetical protein	NA	K4HZY1	Acidithiobacillus_phage	47.1	1.1e-111
WP_011090969.1|9183057_9183450_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085967575.1|9183950_9185079_+|transposase	IS3-like element ISRj2 family transposase	transposase	U5P429	Shigella_phage	33.7	2.0e-18
WP_011084703.1|9186268_9187780_+|transposase	ISNCY-like element ISBj12 family transposase	transposase	NA	NA	NA	NA
