assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000803705.1_ASM80370v1	NZ_CP010304	Escherichia coli O157:H7 str. SS52 chromosome, complete genome	1	71476-71610	1	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|246aa|up_4|NZ_CP010304.1_63444_64182_+,NA|190aa|down_7|NZ_CP010304.1_80651_81221_+	NA|274aa|up_9|NZ_CP010304.1_56579_57401_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_8|NZ_CP010304.1_57397_58387_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_7|NZ_CP010304.1_58386_59673_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_6|NZ_CP010304.1_59725_62080_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_5|NZ_CP010304.1_62334_63150_+	PRK09430, djlA, co-chaperone DjlA	NA|246aa|up_4|NZ_CP010304.1_63444_64182_+	NA	NA|220aa|up_3|NZ_CP010304.1_64599_65259_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP010304.1_65270_68177_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP010304.1_68340_70692_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP010304.1_70766_71462_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP010304.1_71661_73164_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP010304.1_73174_74875_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP010304.1_75213_76092_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP010304.1_76177_76942_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP010304.1_77028_77727_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP010304.1_77710_79321_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP010304.1_79296_80280_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|190aa|down_7|NZ_CP010304.1_80651_81221_+	NA	NA|553aa|down_8|NZ_CP010304.1_81449_83108_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_9|NZ_CP010304.1_83196_83328_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT
GCF_000803705.1_ASM80370v1	NZ_CP010304	Escherichia coli O157:H7 str. SS52 chromosome, complete genome	2	3617853-3618065	2,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACA,CGGTTTATCCCCGCTGGCGCGGGGAACACA	29,30,30	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	TypeI-E	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP010304.1_3609665_3610427_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP010304.1_3610407_3611457_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP010304.1_3611453_3611933_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP010304.1_3611932_3612643_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP010304.1_3612661_3612973_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP010304.1_3613166_3613490_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP010304.1_3613539_3614145_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP010304.1_3614144_3615572_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP010304.1_3615573_3616482_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP010304.1_3616733_3617771_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP010304.1_3618160_3618454_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP010304.1_3618450_3619374_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP010304.1_3619370_3620021_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP010304.1_3620002_3620749_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP010304.1_3620759_3621815_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP010304.1_3621826_3622363_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP010304.1_3622359_3623922_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP010304.1_3624019_3626719_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP010304.1_3626910_3627063_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP010304.1_3627326_3628061_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000803705.1_ASM80370v1	NZ_CP010304	Escherichia coli O157:H7 str. SS52 chromosome, complete genome	3	3643758-3643846	3	CRISPRCasFinder	no	cas3	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GGTTTATCCCCACTGGCGCGGGGAACTC	28	0	0	NA	NA	I-E	1	1	Unclear	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|121aa|up_9|NZ_CP010304.1_3631964_3632327_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_8|NZ_CP010304.1_3632404_3633676_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_7|NZ_CP010304.1_3633666_3633927_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_6|NZ_CP010304.1_3633943_3634519_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|up_5|NZ_CP010304.1_3635523_3636303_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP010304.1_3636280_3637690_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP010304.1_3637711_3639166_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP010304.1_3639235_3640021_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP010304.1_3640339_3641617_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP010304.1_3641643_3643122_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP010304.1_3644185_3644857_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|207aa|down_1|NZ_CP010304.1_3645011_3645632_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|225aa|down_2|NZ_CP010304.1_3645645_3646320_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|NZ_CP010304.1_3646553_3647702_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|305aa|down_4|NZ_CP010304.1_3647698_3648613_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|NZ_CP010304.1_3648672_3649971_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|NZ_CP010304.1_3650058_3651696_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|NZ_CP010304.1_3651923_3652715_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_8|NZ_CP010304.1_3652785_3653121_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_9|NZ_CP010304.1_3653120_3653369_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE
GCF_000803705.1_ASM80370v1	NZ_CP010304	Escherichia coli O157:H7 str. SS52 chromosome, complete genome	4	3859617-3859736	4	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	AGCGTCGCATCAGACGTTKATTGCCGGATGCGG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|244aa|up_9|NZ_CP010304.1_3852261_3852993_+	TIGR00046, Ribosomal_RNA_small_subunit_methyltransferase_E, RNA methyltransferase, RsmE family	NA|316aa|up_8|NZ_CP010304.1_3853005_3853953_+	PRK05246, PRK05246, glutathione synthetase; Provisional	NA|188aa|up_7|NZ_CP010304.1_3854064_3854628_+	PRK00228, PRK00228, YqgE/AlgH family protein	NA|139aa|up_6|NZ_CP010304.1_3854627_3855044_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|327aa|up_5|NZ_CP010304.1_3855234_3856215_-	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|235aa|up_4|NZ_CP010304.1_3856232_3856937_+	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins	NA|189aa|up_3|NZ_CP010304.1_3856954_3857521_+	pfam02325, YGGT, YGGT family	NA|97aa|up_2|NZ_CP010304.1_3857517_3857808_+	PRK05090, PRK05090, hypothetical protein; Validated	NA|198aa|up_1|NZ_CP010304.1_3857815_3858409_+	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed	NA|379aa|up_0|NZ_CP010304.1_3858401_3859538_+	PRK05660, PRK05660, radical SAM family heme chaperone HemW	NA|336aa|down_0|NZ_CP010304.1_3859780_3860788_-	pfam06717, DUF1202, Protein of unknown function (DUF1202)	NA|349aa|down_1|NZ_CP010304.1_3860904_3861951_-	PRK11096, ansB, L-asparaginase II; Provisional	NA|240aa|down_2|NZ_CP010304.1_3862126_3862846_-	PRK10626, PRK10626, hypothetical protein; Provisional	NA|109aa|down_3|NZ_CP010304.1_3863029_3863356_-	PRK11702, PRK11702, hypothetical protein; Provisional	NA|240aa|down_4|NZ_CP010304.1_3863355_3864075_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|351aa|down_5|NZ_CP010304.1_3864235_3865288_+	PRK10880, PRK10880, adenine DNA glycosylase	NA|92aa|down_6|NZ_CP010304.1_3865315_3865591_+	PRK05408, PRK05408, oxidative damage protection protein; Provisional	NA|360aa|down_7|NZ_CP010304.1_3865655_3866735_+	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC	NA|419aa|down_8|NZ_CP010304.1_3866936_3868193_+	TIGR00889, Putative_nucleoside_transporter_YegT, nucleoside transporter	NA|712aa|down_9|NZ_CP010304.1_3868242_3870378_-	PRK13578, PRK13578, ornithine decarboxylase; Provisional
GCF_000803705.1_ASM80370v1	NZ_CP010304	Escherichia coli O157:H7 str. SS52 chromosome, complete genome	5	5331533-5331682	5	CRISPRCasFinder	no		DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,PrimPol,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|579aa|up_6|NZ_CP010304.1_5322698_5324435_+,NA	NA|238aa|up_9|NZ_CP010304.1_5320601_5321315_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP010304.1_5321385_5321979_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|151aa|up_7|NZ_CP010304.1_5322123_5322576_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|579aa|up_6|NZ_CP010304.1_5322698_5324435_+	NA	NA|335aa|up_5|NZ_CP010304.1_5324491_5325496_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP010304.1_5325657_5326074_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP010304.1_5326119_5326623_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP010304.1_5326815_5328012_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP010304.1_5328066_5330922_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP010304.1_5330921_5331365_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP010304.1_5331718_5333230_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP010304.1_5333496_5334597_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP010304.1_5334596_5335679_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP010304.1_5335839_5337342_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP010304.1_5337471_5338491_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|640aa|down_5|NZ_CP010304.1_5338861_5340781_+	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|126aa|down_6|NZ_CP010304.1_5340907_5341285_-	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|111aa|down_7|NZ_CP010304.1_5341406_5341739_-	pfam07978, NIPSNAP, NIPSNAP	NA|156aa|down_8|NZ_CP010304.1_5342742_5343210_-	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|190aa|down_9|NZ_CP010304.1_5343402_5343972_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain
