assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000801185.2_ASM80118v2	NZ_CP009106	Escherichia coli strain 94-3024 chromosome, complete genome	1	622178-622327	1	CRISPRCasFinder	no	cas3	DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Unclear	DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|496aa|up_6|NZ_CP009106.2_613549_615037_+,NA|284aa|down_6|NZ_CP009106.2_631345_632197_+	NA|247aa|up_9|NZ_CP009106.2_611453_612194_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP009106.2_612236_612830_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP009106.2_612974_613427_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|496aa|up_6|NZ_CP009106.2_613549_615037_+	NA	NA|335aa|up_5|NZ_CP009106.2_615137_616142_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP009106.2_616303_616720_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP009106.2_616765_617269_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP009106.2_617461_618658_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP009106.2_618711_621567_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP009106.2_621566_622010_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP009106.2_622363_623875_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP009106.2_624141_625242_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP009106.2_625241_626324_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP009106.2_626442_627945_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP009106.2_628074_629094_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|415aa|down_5|NZ_CP009106.2_629560_630805_+	PRK09692, PRK09692, integrase; Provisional	NA|284aa|down_6|NZ_CP009106.2_631345_632197_+	NA	NA|417aa|down_7|NZ_CP009106.2_632270_633521_+	COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]	NA|378aa|down_8|NZ_CP009106.2_633517_634651_+	TIGR03187, hypothetical_protein, DGQHR domain	NA|969aa|down_9|NZ_CP009106.2_635117_638024_+	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA
GCF_000801185.2_ASM80118v2	NZ_CP009106	Escherichia coli strain 94-3024 chromosome, complete genome	2	840071-840186	2	CRISPRCasFinder	no		DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GATAAGACGCGCCAGCGTCGCATCAGGCGTT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|126aa|up_9|NZ_CP009106.2_826075_826453_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|up_8|NZ_CP009106.2_826455_827277_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_7|NZ_CP009106.2_827273_828263_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_6|NZ_CP009106.2_828262_829549_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_5|NZ_CP009106.2_829601_831956_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_4|NZ_CP009106.2_832210_833026_+	PRK09430, djlA, co-chaperone DjlA	NA|220aa|up_3|NZ_CP009106.2_833142_833802_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP009106.2_833813_836720_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP009106.2_836884_839236_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP009106.2_839310_840006_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP009106.2_840205_841708_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP009106.2_841718_843419_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP009106.2_843757_844636_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP009106.2_844721_845486_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP009106.2_845599_846298_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP009106.2_846281_847892_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP009106.2_847867_848851_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|552aa|down_7|NZ_CP009106.2_849014_850670_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_8|NZ_CP009106.2_850758_850890_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|393aa|down_9|NZ_CP009106.2_850991_852170_+	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter
GCF_000801185.2_ASM80118v2	NZ_CP009106	Escherichia coli strain 94-3024 chromosome, complete genome	3	3752833-3753532	1,1,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,10,10	11	TypeI-E	DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP009106.2_3744706_3745468_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP009106.2_3745448_3746498_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP009106.2_3746494_3746974_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP009106.2_3746973_3747684_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP009106.2_3747702_3748014_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP009106.2_3748207_3748531_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP009106.2_3748580_3749186_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP009106.2_3749185_3750613_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP009106.2_3750614_3751523_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP009106.2_3751774_3752812_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP009106.2_3753628_3753922_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP009106.2_3753921_3754842_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP009106.2_3754838_3755489_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP009106.2_3755470_3756217_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP009106.2_3756227_3757283_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|180aa|down_5|NZ_CP009106.2_3757294_3757834_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP009106.2_3757830_3759393_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP009106.2_3759490_3762190_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP009106.2_3762383_3762536_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP009106.2_3762800_3763535_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_000801185.2_ASM80118v2	NZ_CP009106	Escherichia coli strain 94-3024 chromosome, complete genome	4	3779235-3780117	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGA	29,29,25	0	0	NA	NA	I-E:I-E:I-E	14,14,14	14	Unclear	DEDDh,cas3,RT,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|47aa|down_1|NZ_CP009106.2_3781266_3781407_+	NA|424aa|up_9|NZ_CP009106.2_3767878_3769150_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP009106.2_3769140_3769401_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP009106.2_3769417_3769993_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP009106.2_3770140_3771001_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP009106.2_3770997_3771777_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP009106.2_3771754_3773164_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP009106.2_3773185_3774640_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP009106.2_3774709_3775495_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP009106.2_3775813_3777091_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP009106.2_3777117_3778596_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP009106.2_3780456_3781128_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP009106.2_3781266_3781407_+	NA	NA|291aa|down_2|NZ_CP009106.2_3781420_3782293_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP009106.2_3782352_3783651_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP009106.2_3783738_3785376_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP009106.2_3785603_3786395_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP009106.2_3786465_3786801_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP009106.2_3786800_3787049_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP009106.2_3787126_3789361_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP009106.2_3789408_3790710_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
