assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000800455.1_ASM80045v1	NZ_CP007456	Bifidobacterium kashiwanohense PV20-2 chromosome, complete genome	1	69288-69413	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4	Orphan	TGTCCGATTCTCCAGAATCGGACA	24	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4	NA,NA|64aa|down_2|NZ_CP007456.1_72461_72653_-,NA|83aa|down_3|NZ_CP007456.1_73041_73290_-,NA|162aa|down_4|NZ_CP007456.1_73658_74144_-,NA|452aa|down_5|NZ_CP007456.1_74338_75694_+	NA|355aa|up_9|NZ_CP007456.1_56213_57278_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|843aa|up_8|NZ_CP007456.1_57539_60068_+	pfam03442, CBM_X2, Carbohydrate binding domain X2	NA|283aa|up_7|NZ_CP007456.1_60430_61279_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|266aa|up_6|NZ_CP007456.1_61537_62335_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|330aa|up_5|NZ_CP007456.1_62425_63415_-	cd13560, PBP2_taurine, Taurine-binding periplasmic protein; the type 2 periplasmic binding protein fold	NA|276aa|up_4|NZ_CP007456.1_63619_64447_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|376aa|up_3|NZ_CP007456.1_64485_65613_-	cd08196, Fe-ADH-like, iron-containing alcohol dehydrogenases (Fe-ADH)-like	NA|448aa|up_2|NZ_CP007456.1_65656_67000_-	PRK06062, PRK06062, hypothetical protein; Provisional	NA|400aa|up_1|NZ_CP007456.1_67225_68425_-	pfam07905, PucR, Purine catabolism regulatory protein-like family	NA|240aa|up_0|NZ_CP007456.1_68490_69210_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|154aa|down_0|NZ_CP007456.1_69506_69968_-	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18	NA|549aa|down_1|NZ_CP007456.1_70694_72341_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|64aa|down_2|NZ_CP007456.1_72461_72653_-	NA	NA|83aa|down_3|NZ_CP007456.1_73041_73290_-	NA	NA|162aa|down_4|NZ_CP007456.1_73658_74144_-	NA	NA|452aa|down_5|NZ_CP007456.1_74338_75694_+	NA	NA|235aa|down_6|NZ_CP007456.1_75791_76496_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|438aa|down_7|NZ_CP007456.1_76707_78021_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|664aa|down_8|NZ_CP007456.1_78575_80567_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|849aa|down_9|NZ_CP007456.1_80934_83481_+	cd07544, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily
GCF_000800455.1_ASM80045v1	NZ_CP007456	Bifidobacterium kashiwanohense PV20-2 chromosome, complete genome	2	90179-90303	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4	Orphan	GTCCGATTCTGGTGAATCGGACG	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4	NA|162aa|up_9|NZ_CP007456.1_73658_74144_-,NA|452aa|up_8|NZ_CP007456.1_74338_75694_+,NA	NA|162aa|up_9|NZ_CP007456.1_73658_74144_-	NA	NA|452aa|up_8|NZ_CP007456.1_74338_75694_+	NA	NA|235aa|up_7|NZ_CP007456.1_75791_76496_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|438aa|up_6|NZ_CP007456.1_76707_78021_-	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|664aa|up_5|NZ_CP007456.1_78575_80567_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|849aa|up_4|NZ_CP007456.1_80934_83481_+	cd07544, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily	NA|337aa|up_3|NZ_CP007456.1_83523_84534_-	cd08963, L-asparaginase_I, Type I (cytosolic) bacterial L-asparaginase	NA|502aa|up_2|NZ_CP007456.1_84678_86184_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|493aa|up_1|NZ_CP007456.1_86435_87914_+	PLN02852, PLN02852, ferredoxin-NADP+ reductase	NA|363aa|up_0|NZ_CP007456.1_88107_89196_+	PRK03072, PRK03072, heat shock protein HtpX; Provisional	NA|319aa|down_0|NZ_CP007456.1_91185_92142_+	PRK11689, PRK11689, aromatic amino acid efflux DMT transporter YddG	NA|777aa|down_1|NZ_CP007456.1_92284_94615_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|900aa|down_2|NZ_CP007456.1_94611_97311_-	COG1511, COG1511, Predicted membrane protein [Function unknown]	NA|429aa|down_3|NZ_CP007456.1_98896_100183_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|528aa|down_4|NZ_CP007456.1_100219_101803_+	cd01031, EriC, ClC chloride channel EriC	NA|358aa|down_5|NZ_CP007456.1_101989_103063_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|132aa|down_6|NZ_CP007456.1_103062_103458_+	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB)	NA|476aa|down_7|NZ_CP007456.1_103566_104994_+	cd06582, TM_PBP1_LivH_like, Transmembrane subunit (TM) of Escherichia coli LivH and related proteins	NA|328aa|down_8|NZ_CP007456.1_104997_105981_+	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|332aa|down_9|NZ_CP007456.1_105973_106969_+	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
GCF_000800455.1_ASM80045v1	NZ_CP007456	Bifidobacterium kashiwanohense PV20-2 chromosome, complete genome	3	1004080-1004155	3	CRISPRCasFinder	no		DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4	Orphan	AAACAGCTTGAGAAGCTAGGCTTCT	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4	NA,NA|456aa|down_5|NZ_CP007456.1_1011038_1012406_+	NA|184aa|up_9|NZ_CP007456.1_993452_994004_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|196aa|up_8|NZ_CP007456.1_994135_994723_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|415aa|up_7|NZ_CP007456.1_994805_996050_-	PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional	NA|277aa|up_6|NZ_CP007456.1_996197_997028_-	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|380aa|up_5|NZ_CP007456.1_997192_998332_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|266aa|up_4|NZ_CP007456.1_998706_999504_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|112aa|up_3|NZ_CP007456.1_999586_999922_+	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|380aa|up_2|NZ_CP007456.1_999960_1001100_+	pfam02562, PhoH, PhoH-like protein	NA|182aa|up_1|NZ_CP007456.1_1001096_1001642_+	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|474aa|up_0|NZ_CP007456.1_1001693_1003115_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|380aa|down_0|NZ_CP007456.1_1004346_1005486_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|679aa|down_1|NZ_CP007456.1_1005609_1007646_-	cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases	NA|382aa|down_2|NZ_CP007456.1_1007894_1009040_+	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains	NA|102aa|down_3|NZ_CP007456.1_1009043_1009349_+	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch	NA|476aa|down_4|NZ_CP007456.1_1009367_1010795_+	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit	NA|456aa|down_5|NZ_CP007456.1_1011038_1012406_+	NA	NA|129aa|down_6|NZ_CP007456.1_1012736_1013123_+	cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA	NA|428aa|down_7|NZ_CP007456.1_1013060_1014344_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|219aa|down_8|NZ_CP007456.1_1014417_1015074_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|78aa|down_9|NZ_CP007456.1_1015572_1015806_+	TIGR02194, Glutaredoxin-like_protein_NrdH, Glutaredoxin-like protein NrdH
GCF_000800455.1_ASM80045v1	NZ_CP007456	Bifidobacterium kashiwanohense PV20-2 chromosome, complete genome	4	1714303-1717226	1,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4	Type I-C,Type I-U, Type I-U?	ATTTCAATCCACGCTCTCCGTGAGGAGAGCGAC,ATTTCAATCCACGCTCTCCGTGAGGAGAGCGAC,ATTTCAATCCACGCTCTCCGTGAGGAGAGCGAC	33,33,33	0	0	NA	NA	NA:NA:NA	43,43,43	43	TypeI-C,TypeI-U,TypeI-U?	DEDDh,cas3,csa3,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,c2c9_V-U4	NA|75aa|up_1|NZ_CP007456.1_1713536_1713761_-,NA	NA|259aa|up_9|NZ_CP007456.1_1705721_1706498_+	PRK00865, PRK00865, glutamate racemase; Provisional	NA|53aa|up_8|NZ_CP007456.1_1706576_1706735_+	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|558aa|up_7|NZ_CP007456.1_1706880_1708554_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|313aa|up_6|NZ_CP007456.1_1708685_1709624_-	pfam01112, Asparaginase_2, Asparaginase	NA|283aa|up_5|NZ_CP007456.1_1709779_1710628_+	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli	NA|339aa|up_4|NZ_CP007456.1_1710641_1711658_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|409aa|up_3|NZ_CP007456.1_1711846_1713073_+	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|81aa|up_2|NZ_CP007456.1_1713283_1713526_-	PHA01748, PHA01748, hypothetical protein	NA|75aa|up_1|NZ_CP007456.1_1713536_1713761_-	NA	NA|72aa|up_0|NZ_CP007456.1_1713905_1714121_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	cas2|97aa|down_0|NZ_CP007456.1_1717611_1717902_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|344aa|down_1|NZ_CP007456.1_1717967_1718999_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|226aa|down_2|NZ_CP007456.1_1718998_1719676_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|282aa|down_3|NZ_CP007456.1_1719709_1720555_-	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8c|626aa|down_4|NZ_CP007456.1_1720614_1722492_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|236aa|down_5|NZ_CP007456.1_1722495_1723203_-	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|806aa|down_6|NZ_CP007456.1_1723445_1725863_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|380aa|down_7|NZ_CP007456.1_1726050_1727190_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|1104aa|down_8|NZ_CP007456.1_1727824_1731136_-	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|337aa|down_9|NZ_CP007456.1_1731595_1732606_-	cd01544, PBP1_GalR, ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism
