assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000800255.1_ASM80025v1	NZ_CP009747	Pseudomonas parafulva strain CRS01-1 chromosome, complete genome	1	221482-221630	1	CRISPRCasFinder	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT,cas3,DEDDh,DinG,WYL,csa3,PD-DExK	Type I-F	TTTCTGAGCTGCCTACACGGCAGTGAAC	28	0	0	NA	NA	I-F	2	2	TypeI-F	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT,cas3,DEDDh,DinG,WYL,csa3,PD-DExK	NA|155aa|up_4|NZ_CP009747.1_217387_217852_+,NA|84aa|down_6|NZ_CP009747.1_233616_233868_+	NA|265aa|up_9|NZ_CP009747.1_212578_213373_+	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|276aa|up_8|NZ_CP009747.1_213366_214194_+	COG3639, COG3639, ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism]	NA|256aa|up_7|NZ_CP009747.1_214190_214958_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|297aa|up_6|NZ_CP009747.1_215004_215895_-	COG3781, COG3781, Predicted membrane protein [Function unknown]	NA|352aa|up_5|NZ_CP009747.1_216143_217199_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|155aa|up_4|NZ_CP009747.1_217387_217852_+	NA	NA|207aa|up_3|NZ_CP009747.1_218031_218652_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|182aa|up_2|NZ_CP009747.1_218680_219226_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|390aa|up_1|NZ_CP009747.1_219210_220380_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|297aa|up_0|NZ_CP009747.1_220515_221406_+	COG0583, LysR, Transcriptional regulator [Transcription]	cas6f|188aa|down_0|NZ_CP009747.1_222780_223344_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|342aa|down_1|NZ_CP009747.1_223347_224373_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|326aa|down_2|NZ_CP009747.1_224406_225384_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|442aa|down_3|NZ_CP009747.1_225376_226702_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3-cas2|1131aa|down_4|NZ_CP009747.1_226792_230185_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|326aa|down_5|NZ_CP009747.1_230181_231159_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|84aa|down_6|NZ_CP009747.1_233616_233868_+	NA	RT|492aa|down_7|NZ_CP009747.1_234659_236135_-	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	NA|350aa|down_8|NZ_CP009747.1_236814_237864_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|372aa|down_9|NZ_CP009747.1_237878_238994_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional
GCF_000800255.1_ASM80025v1	NZ_CP009747	Pseudomonas parafulva strain CRS01-1 chromosome, complete genome	2	221661-222650	1,2,1	CRT,CRISPRCasFinder,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT,cas3,DEDDh,DinG,WYL,csa3,PD-DExK	Type I-F	NTTTCTGAGCTGCCTACACGGCAGTGAAC,TTTCTGAGCTGCCTACACGGCAGTGAAC,TTTCTGAGCTGCCTACACGGCAGTGAAC	29,28,28	0	0	NA	NA	I-F:I-F:I-F	16,15,14	16	TypeI-F	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT,cas3,DEDDh,DinG,WYL,csa3,PD-DExK	NA|155aa|up_4|NZ_CP009747.1_217387_217852_+,NA|84aa|down_6|NZ_CP009747.1_233616_233868_+	NA|265aa|up_9|NZ_CP009747.1_212578_213373_+	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|276aa|up_8|NZ_CP009747.1_213366_214194_+	COG3639, COG3639, ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism]	NA|256aa|up_7|NZ_CP009747.1_214190_214958_+	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE	NA|297aa|up_6|NZ_CP009747.1_215004_215895_-	COG3781, COG3781, Predicted membrane protein [Function unknown]	NA|352aa|up_5|NZ_CP009747.1_216143_217199_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|155aa|up_4|NZ_CP009747.1_217387_217852_+	NA	NA|207aa|up_3|NZ_CP009747.1_218031_218652_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|182aa|up_2|NZ_CP009747.1_218680_219226_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|390aa|up_1|NZ_CP009747.1_219210_220380_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|297aa|up_0|NZ_CP009747.1_220515_221406_+	COG0583, LysR, Transcriptional regulator [Transcription]	cas6f|188aa|down_0|NZ_CP009747.1_222780_223344_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|342aa|down_1|NZ_CP009747.1_223347_224373_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|326aa|down_2|NZ_CP009747.1_224406_225384_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|442aa|down_3|NZ_CP009747.1_225376_226702_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3-cas2|1131aa|down_4|NZ_CP009747.1_226792_230185_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|326aa|down_5|NZ_CP009747.1_230181_231159_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|84aa|down_6|NZ_CP009747.1_233616_233868_+	NA	RT|492aa|down_7|NZ_CP009747.1_234659_236135_-	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	NA|350aa|down_8|NZ_CP009747.1_236814_237864_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|372aa|down_9|NZ_CP009747.1_237878_238994_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional
GCF_000800255.1_ASM80025v1	NZ_CP009747	Pseudomonas parafulva strain CRS01-1 chromosome, complete genome	3	231406-233478	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT,cas3,DEDDh,DinG,WYL,csa3,PD-DExK	Type I-F	TTTCTGAGCTGCCTACACGGCAGTGAAC,GTTCACTGCCGTGTAGGCAGCTCAGAAA,GTTCACTGCCGTGTAGGCAGCTCAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	34,34,34	34	TypeI-F	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT,cas3,DEDDh,DinG,WYL,csa3,PD-DExK	NA,NA|84aa|down_0|NZ_CP009747.1_233616_233868_+	NA|207aa|up_9|NZ_CP009747.1_218031_218652_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|182aa|up_8|NZ_CP009747.1_218680_219226_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|390aa|up_7|NZ_CP009747.1_219210_220380_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|297aa|up_6|NZ_CP009747.1_220515_221406_+	COG0583, LysR, Transcriptional regulator [Transcription]	cas6f|188aa|up_5|NZ_CP009747.1_222780_223344_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|342aa|up_4|NZ_CP009747.1_223347_224373_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|326aa|up_3|NZ_CP009747.1_224406_225384_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|442aa|up_2|NZ_CP009747.1_225376_226702_-	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1)	cas3-cas2|1131aa|up_1|NZ_CP009747.1_226792_230185_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|326aa|up_0|NZ_CP009747.1_230181_231159_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|84aa|down_0|NZ_CP009747.1_233616_233868_+	NA	RT|492aa|down_1|NZ_CP009747.1_234659_236135_-	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons	NA|350aa|down_2|NZ_CP009747.1_236814_237864_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|372aa|down_3|NZ_CP009747.1_237878_238994_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional	NA|112aa|down_4|NZ_CP009747.1_239035_239371_+	PRK05585, yajC, preprotein translocase subunit YajC; Validated	NA|621aa|down_5|NZ_CP009747.1_239436_241299_+	PRK05812, secD, preprotein translocase subunit SecD; Reviewed	NA|303aa|down_6|NZ_CP009747.1_241309_242218_+	PRK13022, secF, protein translocase subunit SecF	NA|183aa|down_7|NZ_CP009747.1_242338_242887_+	PRK11280, PRK11280, hypothetical protein; Provisional	NA|273aa|down_8|NZ_CP009747.1_242969_243788_-	cd01639, IMPase, IMPase, inositol monophosphatase and related domains	NA|257aa|down_9|NZ_CP009747.1_243939_244710_+	PRK15114, PRK15114, tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
GCF_000800255.1_ASM80025v1	NZ_CP009747	Pseudomonas parafulva strain CRS01-1 chromosome, complete genome	4	2201004-2201097	4	CRISPRCasFinder	no		cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT,cas3,DEDDh,DinG,WYL,csa3,PD-DExK	Orphan	GCAACCGCCTGACCGCCCTGCCCGA	25	0	0	NA	NA	NA	1	1	Orphan	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT,cas3,DEDDh,DinG,WYL,csa3,PD-DExK	NA|63aa|up_8|NZ_CP009747.1_2189268_2189457_-,NA|81aa|up_2|NZ_CP009747.1_2197120_2197363_+,NA|101aa|down_3|NZ_CP009747.1_2205622_2205925_-,NA|143aa|down_4|NZ_CP009747.1_2206081_2206510_+	NA|172aa|up_9|NZ_CP009747.1_2188394_2188910_-	PRK09651, PRK09651, RNA polymerase sigma factor FecI; Provisional	NA|63aa|up_8|NZ_CP009747.1_2189268_2189457_-	NA	NA|172aa|up_7|NZ_CP009747.1_2189455_2189971_+	pfam08281, Sigma70_r4_2, Sigma-70, region 4	NA|383aa|up_6|NZ_CP009747.1_2190050_2191199_+	cd06234, M14_PaCCP-like, Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases similar to Pseudomonas aerugnosa CCP (PaCCP)	NA|760aa|up_5|NZ_CP009747.1_2191496_2193776_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|154aa|up_4|NZ_CP009747.1_2193799_2194261_+	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|795aa|up_3|NZ_CP009747.1_2194272_2196657_+	PRK13557, PRK13557, histidine kinase; Provisional	NA|81aa|up_2|NZ_CP009747.1_2197120_2197363_+	NA	NA|358aa|up_1|NZ_CP009747.1_2197472_2198546_+	COG1485, COG1485, Predicted ATPase [General function prediction only]	NA|630aa|up_0|NZ_CP009747.1_2198548_2200438_-	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	NA|377aa|down_0|NZ_CP009747.1_2201859_2202990_-	COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]	NA|299aa|down_1|NZ_CP009747.1_2203346_2204243_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|417aa|down_2|NZ_CP009747.1_2204368_2205619_+	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]	NA|101aa|down_3|NZ_CP009747.1_2205622_2205925_-	NA	NA|143aa|down_4|NZ_CP009747.1_2206081_2206510_+	NA	NA|481aa|down_5|NZ_CP009747.1_2206531_2207974_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|245aa|down_6|NZ_CP009747.1_2208186_2208921_+	pfam00263, Secretin, Bacterial type II and III secretion system protein	NA|442aa|down_7|NZ_CP009747.1_2209187_2210513_+	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|138aa|down_8|NZ_CP009747.1_2211255_2211669_+	PRK06602, PRK06602, NADH:ubiquinone oxidoreductase subunit A; Validated	NA|226aa|down_9|NZ_CP009747.1_2211679_2212357_+	PRK06411, PRK06411, NADH-quinone oxidoreductase subunit NuoB
GCF_000800255.1_ASM80025v1	NZ_CP009747	Pseudomonas parafulva strain CRS01-1 chromosome, complete genome	5	4103204-4103355	5	CRISPRCasFinder	no		cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT,cas3,DEDDh,DinG,WYL,csa3,PD-DExK	Orphan	GGCGTCGTCTCATCAATCGCACATTCCCCTCGATCAGCTTGAAGCTTG	48	0	0	NA	NA	NA	1	1	Orphan	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,RT,cas3,DEDDh,DinG,WYL,csa3,PD-DExK	NA,NA|353aa|down_2|NZ_CP009747.1_4106891_4107950_+,NA|182aa|down_4|NZ_CP009747.1_4109278_4109824_-,NA|222aa|down_7|NZ_CP009747.1_4113076_4113742_-,NA|89aa|down_8|NZ_CP009747.1_4113941_4114208_+,NA|60aa|down_9|NZ_CP009747.1_4114204_4114384_+	NA|472aa|up_9|NZ_CP009747.1_4090789_4092205_+	COG3025, COG3025, Uncharacterized conserved protein [Function unknown]	NA|352aa|up_8|NZ_CP009747.1_4092229_4093285_-	cd04309, HAD_PSP_eu, phosphoserine phosphatase eukaryotic-like, similar to human phosphoserine phosphatase	NA|464aa|up_7|NZ_CP009747.1_4093529_4094921_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|172aa|up_6|NZ_CP009747.1_4094952_4095468_-	pfam00186, DHFR_1, Dihydrofolate reductase	NA|460aa|up_5|NZ_CP009747.1_4095533_4096913_+	pfam11067, DUF2868, Protein of unknown function (DUF2868)	NA|455aa|up_4|NZ_CP009747.1_4096905_4098270_+	pfam11981, DUF3482, Domain of unknown function (DUF3482)	NA|342aa|up_3|NZ_CP009747.1_4098299_4099325_-	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein	NA|575aa|up_2|NZ_CP009747.1_4099354_4101079_-	TIGR03262, PhnU2, putative 2-aminoethylphosphonate ABC transporter, permease protein	NA|353aa|up_1|NZ_CP009747.1_4101080_4102139_-	TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein	NA|290aa|up_0|NZ_CP009747.1_4102266_4103136_-	TIGR03339, phn_lysR, aminoethylphosphonate catabolism associated LysR family transcriptional regulator	NA|761aa|down_0|NZ_CP009747.1_4103375_4105658_-	cd07545, P-type_ATPase_Cd-like, P-type heavy metal-transporting ATPase, similar to Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase	NA|148aa|down_1|NZ_CP009747.1_4105756_4106200_+	TIGR02047, putative_regulatory_protein, Cd(II)/Pb(II)-responsive transcriptional regulator	NA|353aa|down_2|NZ_CP009747.1_4106891_4107950_+	NA	NA|355aa|down_3|NZ_CP009747.1_4108217_4109282_+	pfam14350, Beta_protein, Beta protein	NA|182aa|down_4|NZ_CP009747.1_4109278_4109824_-	NA	NA|533aa|down_5|NZ_CP009747.1_4110216_4111815_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|366aa|down_6|NZ_CP009747.1_4111807_4112905_+	cd17932, DEXQc_UvrD, DEXQD-box helicase domain of UvrD	NA|222aa|down_7|NZ_CP009747.1_4113076_4113742_-	NA	NA|89aa|down_8|NZ_CP009747.1_4113941_4114208_+	NA	NA|60aa|down_9|NZ_CP009747.1_4114204_4114384_+	NA
