The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009850	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4, complete genome	4761385	1160120	1231038	4761385	plate,head,portal,holin,lysis,tail,tRNA,capsid,integrase,terminase	Salmonella_phage(31.91%)	80	1154789:1154804	1211754:1211769
1154789:1154804	attL	CAGCCCGAAGGCTGCC	NA	NA	NA	NA
WP_038421043.1|1160120_1161329_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	50.8	1.1e-107
WP_008502505.1|1161966_1162449_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	2.3e-29
WP_023337653.1|1162566_1163043_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_014884884.1|1163032_1163320_+	RnfH family protein	NA	NA	NA	NA	NA
WP_014884883.1|1163424_1163763_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_071819763.1|1163744_1163927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014884882.1|1163901_1165563_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_008502500.1|1165648_1166527_-	NAD(+) kinase	NA	NA	NA	NA	NA
WP_014884881.1|1166649_1167243_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_032629440.1|1167294_1168581_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_014884879.1|1168599_1169391_-	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_014884878.1|1169557_1170919_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_003863133.1|1171035_1171284_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_003863136.1|1171299_1171839_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_014884877.1|1171870_1172638_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_002914145.1|1172681_1173029_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_071847085.1|1173173_1173392_-	DNA-binding transcriptional regulator	NA	Q37973	Salmonella_virus	79.2	8.0e-30
WP_038421044.1|1173469_1174633_-	phage late control D family protein	NA	A0A218M4J7	Erwinia_phage	77.0	8.7e-163
WP_038421045.1|1174629_1175094_-|tail	phage tail protein	tail	A0A218M4I2	Erwinia_phage	72.1	3.2e-60
WP_038421046.1|1175106_1177554_-|tail	phage tail tape measure protein	tail	Q7Y4C8	Escherichia_virus	75.5	9.0e-303
WP_000763321.1|1177543_1177666_-|tail	GpE family phage tail protein	tail	O80316	Escherichia_phage	89.7	5.0e-13
WP_038421047.1|1177698_1178007_-|tail	phage tail assembly protein	tail	A0A0F7LDQ8	Escherichia_phage	73.6	1.4e-27
WP_001207673.1|1178067_1178586_-|tail	phage major tail tube protein	tail	A0A218M4J0	Erwinia_phage	82.0	1.0e-78
WP_038421048.1|1178598_1179792_-|tail	phage tail sheath protein	tail	A0A0F7LBW9	Escherichia_phage	82.1	6.1e-188
WP_032665574.1|1179914_1180319_-|tail	tail fiber assembly protein	tail	U5P083	Shigella_phage	47.0	5.3e-27
WP_038421049.1|1180330_1182361_-|tail	tail fiber protein	tail	U5N099	Enterobacteria_phage	80.5	5.3e-91
WP_023333111.1|1182372_1182903_-|tail	phage tail protein I	tail	Q37841	Escherichia_phage	86.9	1.2e-90
WP_038421050.1|1182895_1183804_-|plate	baseplate assembly protein	plate	S4TNY7	Salmonella_phage	82.8	7.0e-136
WP_038421051.1|1183809_1184160_-|plate	baseplate assembly protein	plate	A0A0M4RE59	Salmonella_phage	70.7	1.5e-38
WP_038421052.1|1184156_1184798_-|plate	phage baseplate assembly protein V	plate	A0A0M4S6F6	Salmonella_phage	82.2	8.6e-96
WP_023338713.1|1184866_1185316_-	phage virion morphogenesis protein	NA	A0A0M3UL83	Salmonella_phage	70.1	2.0e-51
WP_023338712.1|1185308_1185776_-|tail	phage tail protein	tail	A0A218M4K6	Erwinia_phage	72.9	7.7e-62
WP_080297781.1|1185738_1185984_-|holin	holin	holin	S4TNY4	Salmonella_phage	76.5	1.0e-28
WP_038421053.1|1185871_1186297_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A218M4K2	Erwinia_phage	69.9	3.5e-45
WP_038421054.1|1186293_1186803_-	lysozyme	NA	A0A218M4K3	Erwinia_phage	87.5	2.8e-81
WP_038421055.1|1186786_1187008_-	hypothetical protein	NA	A0A218M4L5	Erwinia_phage	74.0	5.5e-26
WP_023209074.1|1186998_1187202_-|tail	phage tail X family protein	tail	A0A218M4L8	Erwinia_phage	80.6	1.1e-25
WP_038421056.1|1187201_1187708_-|head	head completion/stabilization protein	head	O80306	Escherichia_phage	70.8	1.3e-62
WP_038421057.1|1187807_1188563_-|terminase	terminase endonuclease subunit	terminase	Q6K1I5	Salmonella_virus	68.1	2.3e-79
WP_038421058.1|1188566_1189634_-|capsid	phage major capsid protein, P2 family	capsid	S4TUA6	Salmonella_phage	83.3	2.3e-170
WP_038421059.1|1189689_1190544_-|capsid	GPO family capsid scaffolding protein	capsid	A0A218M4L9	Erwinia_phage	69.4	4.9e-107
WP_038421060.1|1190711_1192481_+|terminase	terminase ATPase subunit family protein	terminase	A0A218M4M1	Erwinia_phage	85.4	5.5e-302
WP_038421061.1|1192482_1193508_+|portal	phage portal protein	portal	Q6K1J0	Salmonella_virus	82.9	4.6e-168
WP_038421062.1|1193820_1194078_-	hypothetical protein	NA	A0A1V0E5L9	Salmonella_phage	51.3	6.0e-16
WP_023278476.1|1194165_1194399_-	DinI family protein	NA	A0A0M4S6H1	Salmonella_phage	97.4	3.1e-35
WP_023209082.1|1194402_1194585_-	hypothetical protein	NA	A0A0M5M1G5	Salmonella_phage	96.7	2.6e-26
WP_038421336.1|1194698_1196930_-	replication endonuclease	NA	A0A218M4H2	Erwinia_phage	93.5	0.0e+00
WP_038421063.1|1196922_1197279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038421064.1|1197275_1197500_-	TraR/DksA family transcriptional regulator	NA	Q6K1F5	Salmonella_virus	91.9	2.0e-31
WP_038421065.1|1197499_1197727_-	DUF2732 domain-containing protein	NA	A0A0M3UL87	Salmonella_phage	93.3	3.2e-29
WP_038421066.1|1197794_1198133_-	DUF5347 domain-containing protein	NA	A0A218M4I7	Erwinia_phage	92.0	8.9e-52
WP_023338694.1|1198096_1198297_-	DUF2724 domain-containing protein	NA	Q6K1F7	Salmonella_virus	90.9	4.3e-30
WP_038421067.1|1198304_1198814_-	phage regulatory CII family protein	NA	A0A0M4QWN1	Salmonella_phage	95.9	7.5e-87
WP_038421068.1|1198846_1199218_-	hypothetical protein	NA	A0A0M4R4X7	Salmonella_phage	97.6	1.2e-60
WP_038421069.1|1199338_1200175_+	phage repressor protein CI	NA	A0A0M4RE65	Salmonella_phage	77.7	7.7e-121
WP_038421070.1|1200183_1200522_+	DUF2511 domain-containing protein	NA	A0A0M3ULF8	Salmonella_phage	86.6	6.2e-53
WP_038421071.1|1200544_1201594_+|integrase	site-specific integrase	integrase	A0A0M4S6G4	Salmonella_phage	88.3	2.3e-186
WP_023337651.1|1201822_1202227_+	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
WP_023337650.1|1202265_1203636_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_014884874.1|1203638_1204124_-	OmpA family protein	NA	NA	NA	NA	NA
WP_014884873.1|1204136_1205357_-	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	39.8	1.9e-06
WP_023337647.1|1205349_1205946_-	YfiR family protein	NA	NA	NA	NA	NA
WP_014884871.1|1206039_1206414_-	DUF2799 domain-containing protein	NA	NA	NA	NA	NA
WP_014884870.1|1206629_1207700_+	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.5	9.0e-90
WP_023337646.1|1207710_1208832_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_014884868.1|1208892_1209765_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_014884867.1|1209761_1210922_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_100249759.1|1211029_1211077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014884866.1|1211181_1211523_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_014884865.1|1211790_1212528_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
1211754:1211769	attR	GGCAGCCTTCGGGCTG	NA	NA	NA	NA
WP_014884864.1|1212659_1213640_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_023337645.1|1213636_1214368_+	polyphenol oxidase	NA	NA	NA	NA	NA
WP_014884862.1|1214498_1217072_+	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.2	5.3e-128
WP_023331104.1|1222689_1223985_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.4	1.8e-44
WP_014884860.1|1223981_1224305_-	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_023331103.1|1224350_1225706_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_038421072.1|1225816_1228480_-	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_023337643.1|1228515_1229214_-	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_014884856.1|1229283_1229703_-	thioredoxin TrxC	NA	A0A1J0GW78	Streptomyces_phage	40.2	7.7e-13
WP_014884855.1|1229907_1231038_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
>prophage 2
NZ_CP009850	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4, complete genome	4761385	1702029	1709457	4761385		Enterobacteria_phage(50.0%)	7	NA	NA
WP_014884480.1|1702029_1703094_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.8	1.1e-100
WP_014884479.1|1703109_1703976_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	66.7	4.1e-109
WP_014884478.1|1703982_1704879_+	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_014884477.1|1704889_1705438_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	54.4	4.1e-54
WP_014884476.1|1705573_1706980_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.3	4.0e-37
WP_014884475.1|1707234_1708401_+	UDP-glucose 6-dehydrogenase	NA	A0A1J0FA55	Only_Syngen_Nebraska_virus	53.0	2.0e-111
WP_014884474.1|1708452_1709457_-	NAD-dependent epimerase	NA	A0A2K9L4U8	Tupanvirus	30.4	1.7e-34
>prophage 3
NZ_CP009850	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4, complete genome	4761385	2145816	2205552	4761385	plate,portal,head,holin,protease,lysis,tail,capsid,integrase,terminase	Escherichia_phage(22.5%)	72	2143473:2143491	2162288:2162306
2143473:2143491	attL	CCGGCGGCCAGCAGTTCGC	NA	NA	NA	NA
WP_014884156.1|2145816_2146827_-|integrase	tyrosine-type recombinase/integrase	integrase	Q83VS6	Escherichia_phage	76.1	1.2e-147
WP_014884155.1|2146923_2147223_-	helix-turn-helix transcriptional regulator	NA	Q1JS61	Enterobacteria_phage	74.7	2.9e-38
WP_014884154.1|2147347_2147623_+	hypothetical protein	NA	Q1JS60	Enterobacteria_phage	85.6	6.8e-42
WP_014884153.1|2147789_2148290_+	hypothetical protein	NA	M1SV55	Escherichia_phage	75.9	7.4e-71
WP_014884152.1|2148356_2148575_+	DUF2732 family protein	NA	S4TP68	Salmonella_phage	62.1	3.8e-11
WP_014884151.1|2148597_2148861_+	hypothetical protein	NA	U5N3W1	Enterobacteria_phage	57.0	2.0e-22
WP_032609413.1|2148862_2151160_+	replication endonuclease	NA	Q858T4	Yersinia_virus	75.5	0.0e+00
WP_032609411.1|2151156_2151441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032609409.1|2151588_2152143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032609407.1|2152824_2153343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032609405.1|2153345_2154545_-	ATP-binding protein	NA	A0A0P0IKU8	Acinetobacter_phage	32.6	3.4e-53
WP_038421119.1|2154872_2155898_-|portal	phage portal protein	portal	Q6K1J0	Salmonella_virus	83.2	9.3e-169
WP_032609402.1|2155899_2157669_-|terminase	terminase ATPase subunit family protein	terminase	A0A218M4M1	Erwinia_phage	85.7	1.1e-302
WP_032609401.1|2157835_2158690_+|capsid	GPO family capsid scaffolding protein	capsid	S4TP53	Salmonella_phage	72.2	1.0e-112
WP_032609400.1|2158745_2159813_+|capsid	phage major capsid protein, P2 family	capsid	S4TUA6	Salmonella_phage	83.3	3.9e-170
WP_038421123.1|2159816_2160572_+|terminase	terminase endonuclease subunit	terminase	Q6K1I5	Salmonella_virus	65.3	7.5e-75
WP_032609395.1|2160671_2161178_+|head	head completion/stabilization protein	head	O80306	Escherichia_phage	70.2	7.1e-61
WP_032609394.1|2161177_2161381_+|tail	tail protein X	tail	A0A218M4L8	Erwinia_phage	76.1	6.1e-24
WP_032609392.1|2161371_2161593_+	hypothetical protein	NA	A0A218M4L5	Erwinia_phage	74.0	7.1e-26
WP_032609391.1|2161576_2162086_+	lysozyme	NA	A0A218M4K3	Erwinia_phage	86.9	1.7e-78
WP_038421124.1|2162082_2162508_+|lysis	LysB family phage lysis regulatory protein	lysis	O80310	Escherichia_phage	70.1	9.2e-46
2162288:2162306	attR	GCGAACTGCTGGCCGCCGG	NA	NA	NA	NA
WP_072163335.1|2162395_2162641_+|holin	holin	holin	S4TNY4	Salmonella_phage	77.8	1.0e-28
WP_032609387.1|2162603_2163071_+|tail	phage tail protein	tail	A0A218M4K6	Erwinia_phage	71.6	6.5e-61
WP_032609386.1|2163063_2163513_+	phage virion morphogenesis protein	NA	O80313	Escherichia_phage	73.5	2.6e-51
WP_032609384.1|2163582_2164314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032609382.1|2164445_2165087_+|plate	phage baseplate assembly protein V	plate	A0A0M4S6F6	Salmonella_phage	83.1	1.6e-97
WP_023338715.1|2165083_2165434_+	hypothetical protein	NA	A0A0M4RE59	Salmonella_phage	69.8	1.5e-38
WP_032609381.1|2165439_2166348_+|plate	baseplate assembly protein	plate	Q6K1H4	Salmonella_virus	83.1	3.2e-136
WP_032609378.1|2166340_2166871_+|tail	phage tail protein I	tail	Q37841	Escherichia_phage	86.4	1.5e-90
WP_038421125.1|2168726_2169242_+|tail	tail fiber assembly protein	tail	F1BUK2	Cronobacter_phage	36.3	4.9e-17
WP_032609374.1|2169616_2170810_+|tail	phage tail sheath protein	tail	A0A0F7LBW9	Escherichia_phage	81.1	8.3e-185
WP_038421126.1|2170822_2171341_+|tail	phage major tail tube protein	tail	A0A218M4J0	Erwinia_phage	79.1	9.4e-77
WP_032609371.1|2171397_2171700_+|tail	phage tail assembly protein	tail	A0A0F7LDQ8	Escherichia_phage	73.6	1.4e-27
WP_032609370.1|2171732_2171855_+|tail	GpE family phage tail protein	tail	O80316	Escherichia_phage	92.3	1.0e-13
WP_038421127.1|2171844_2174292_+|tail	phage tail tape measure protein	tail	Q858U7	Yersinia_virus	72.4	2.5e-284
WP_032609367.1|2174304_2174769_+|tail	phage tail protein	tail	A0A218M4I2	Erwinia_phage	72.1	4.2e-60
WP_032609366.1|2174765_2175935_+	phage late control D family protein	NA	A0A218M4J7	Erwinia_phage	76.9	4.0e-160
WP_032609365.1|2176011_2176233_+	DNA-binding transcriptional regulator	NA	A0A2I8TV89	Erwinia_phage	69.9	6.0e-25
WP_032609364.1|2176349_2177240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032609363.1|2177296_2177773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023330569.1|2177918_2178215_-	YciI family protein	NA	NA	NA	NA	NA
WP_014884119.1|2178437_2179166_+	TonB system transport protein TonB	NA	NA	NA	NA	NA
WP_008502796.1|2179202_2179598_-	acyl-CoA thioester hydrolase YciA	NA	NA	NA	NA	NA
WP_014884118.1|2179702_2180242_-	septation protein A	NA	NA	NA	NA	NA
WP_014884117.1|2180299_2181043_-	UPF0259 family protein	NA	NA	NA	NA	NA
WP_014884116.1|2181068_2181473_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_014884115.1|2181754_2182387_+	outer membrane protein OmpW	NA	NA	NA	NA	NA
WP_014884114.1|2182433_2182772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014884113.1|2182897_2183131_-	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA	NA
WP_023337389.1|2183127_2184339_-	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA	NA
WP_023337388.1|2184516_2185065_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_038421128.1|2185302_2186082_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023337386.1|2186181_2187201_+	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014884109.1|2187457_2188225_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014884108.1|2188301_2189123_-	alpha/beta hydrolase	NA	A0A1D8EW21	Mycobacterium_phage	25.3	3.7e-11
WP_014884107.1|2189263_2189743_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014884106.1|2189872_2190532_+	DsbA family protein	NA	NA	NA	NA	NA
WP_032629007.1|2190595_2191201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014884103.1|2191692_2191905_+	RNA chaperone/antiterminator CspA	NA	A0A1W6JNX5	Morganella_phage	80.6	8.4e-24
WP_014884102.1|2192060_2193317_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_014884101.1|2193583_2194393_-	tryptophan synthase subunit alpha	NA	NA	NA	NA	NA
WP_014884100.1|2194392_2195586_-	tryptophan synthase subunit beta	NA	NA	NA	NA	NA
WP_023337383.1|2195596_2196955_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	40.2	5.6e-36
WP_023330556.1|2196958_2198554_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	NA	A0A0N7IRD9	Acinetobacter_phage	37.3	1.9e-51
WP_023330555.1|2198553_2200116_-	anthranilate synthase component 1	NA	NA	NA	NA	NA
WP_106993556.1|2200212_2200257_-	trp operon leader peptide	NA	NA	NA	NA	NA
WP_032645259.1|2200396_2201278_+	5'-3' exoribonuclease	NA	NA	NA	NA	NA
WP_003856793.1|2201274_2201895_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_014884095.1|2201991_2202870_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA	NA
WP_023337380.1|2202905_2203496_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_014884093.1|2203492_2204254_-	YciK family oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	23.0	1.8e-07
WP_014884092.1|2204505_2205552_+|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	28.7	2.8e-19
>prophage 4
NZ_CP009850	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4, complete genome	4761385	2271748	2278677	4761385	tRNA,integrase	Escherichia_phage(50.0%)	9	2259763:2259777	2281793:2281807
2259763:2259777	attL	ATCTTCTTGTTTTAC	NA	NA	NA	NA
WP_023338360.1|2271748_2272891_+	methyl-accepting chemotaxis sensory transducer	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.3	1.7e-09
WP_014884034.1|2273047_2274031_+	zinc transporter ZntB	NA	NA	NA	NA	NA
WP_023337353.1|2273969_2274167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000025608.1|2274306_2274489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014884033.1|2274516_2275890_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.6	6.2e-51
WP_014884032.1|2275932_2276868_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	95.7	4.0e-142
WP_038421132.1|2276917_2278156_-|integrase	site-specific integrase	integrase	A0A0U2JGI6	Escherichia_phage	70.5	4.6e-170
WP_014884030.1|2278157_2278370_-	hypothetical protein	NA	A0A0U2RY08	Escherichia_phage	64.8	4.3e-20
WP_020882485.1|2278434_2278677_-	DUF4060 family protein	NA	K7PHF4	Enterobacteria_phage	93.6	1.3e-33
2281793:2281807	attR	GTAAAACAAGAAGAT	NA	NA	NA	NA
>prophage 5
NZ_CP009850	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4, complete genome	4761385	3174087	3184125	4761385	protease	Vibrio_phage(33.33%)	7	NA	NA
WP_080297787.1|3174087_3176184_-	type I-F CRISPR-associated helicase Cas3	NA	A0A2I7RCU8	Vibrio_phage	27.2	1.1e-51
WP_023337010.1|3176180_3177164_-	type I-F CRISPR-associated endonuclease Cas1	NA	A0A2D0YZM7	Vibrio_phage	35.9	4.7e-45
WP_045307508.1|3178123_3178567_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038421208.1|3178997_3181277_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.0	3.1e-164
WP_006174393.1|3181304_3181625_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.9	4.5e-13
WP_008499993.1|3181892_3182114_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.7	3.6e-17
WP_023332529.1|3182184_3184125_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.1	1.9e-37
>prophage 1
NZ_CP009851	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pENT-c88, complete sequence	51254	0	17370	51254	transposase	Enterobacteria_phage(28.57%)	14	NA	NA
WP_001247892.1|197_488_+	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_001293886.1|484_886_+	DUF86 domain-containing protein	NA	NA	NA	NA	NA
WP_000215515.1|875_1232_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_000091613.1|1486_1801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052133427.1|2227_3376_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	64.0	2.5e-122
WP_001159650.1|3451_4219_-	DUF1883 domain-containing protein	NA	S6BFN8	Thermus_phage	46.4	9.8e-30
WP_000160641.1|4387_5002_+	TIR domain-containing protein	NA	NA	NA	NA	NA
WP_001258875.1|5042_5750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004098835.1|5777_6344_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	82.6	3.5e-77
WP_038421110.1|6507_9516_+|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	64.3	0.0e+00
WP_000509966.1|10292_10898_-	DNA resolvase	NA	A0A1S5Y2X8	uncultured_archaeal_virus	35.3	5.5e-20
WP_001553819.1|10992_13890_+|transposase	Tn3-like element Tn5403 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	37.8	4.2e-182
WP_017694275.1|14692_15055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032666434.1|15651_17370_-	hybrid sensor histidine kinase/response regulator	NA	A0A1V0SGX0	Hokovirus	28.0	2.1e-27
>prophage 2
NZ_CP009851	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pENT-c88, complete sequence	51254	37796	45381	51254	transposase	Wolbachia_phage(16.67%)	10	NA	NA
WP_032666421.1|37796_38324_+	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	38.2	3.3e-21
WP_032666420.1|38355_38787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032666419.1|39266_40232_-	DUF1738 domain-containing protein	NA	A0A1V0EEV1	Caulobacter_phage	42.4	2.8e-58
WP_017694266.1|40681_40921_+	hypothetical protein	NA	I6PD82	Cronobacter_phage	52.6	1.6e-18
WP_032666418.1|40922_41306_+	sOS mutagenesis and repair protein UmuD	NA	A0A077SK24	Escherichia_phage	46.9	3.1e-24
WP_032666417.1|41415_41907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087451024.1|42243_43364_-|transposase	IS3-like element ISSen4 family transposase	transposase	S5WIU1	Leptospira_phage	42.8	1.7e-51
WP_130983332.1|43274_43460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032672260.1|43638_44340_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_032666416.1|44883_45381_-	N-acetyltransferase	NA	J9Q6J3	Salmonella_phage	40.5	8.6e-27
>prophage 1
NZ_CP009852	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pENT-e56, complete sequence	77248	2253	38884	77248	transposase,protease,integrase	Escherichia_phage(33.33%)	45	1523:1537	39222:39236
1523:1537	attL	TCCAGATCCTTCAGC	NA	NA	NA	NA
WP_004187383.1|2253_2994_-|integrase	tyrosine-type recombinase/integrase	integrase	I3WFA4	Macacine_betaherpesvirus	51.6	9.5e-22
WP_040119731.1|3012_3261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_040119732.1|3257_3743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_040119733.1|3739_4327_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_040119734.1|4319_4568_-	helix-turn-helix transcriptional regulator	NA	A0A248SLB9	Klebsiella_phage	56.9	1.2e-10
WP_040119735.1|4564_5026_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023302505.1|5161_5707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_040119736.1|5859_6267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023302504.1|6268_6847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_040119737.1|6824_7181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_045342057.1|7707_8982_+	antitoxin RelB	NA	NA	NA	NA	NA
WP_040119738.1|8998_9682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011091034.1|9726_9945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004187413.1|9947_10157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049866823.1|10623_10863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004187415.1|11007_11328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_040119740.1|11330_12179_+	3'-5' exonuclease	NA	A0A1D9C9N8	Salinivibrio_phage	38.9	6.6e-27
WP_077255004.1|12201_13506_-	translesion error-prone DNA polymerase V subunit UmuC	NA	A0A1W6JNT0	Morganella_phage	50.6	1.3e-111
WP_049866821.1|13454_13889_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	55.3	2.1e-29
WP_020277900.1|13981_14347_-	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA	NA
WP_004187429.1|14315_14573_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA	NA
WP_040119742.1|14665_15319_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_032451295.1|15398_15782_+	DUF1496 domain-containing protein	NA	NA	NA	NA	NA
WP_004187436.1|15886_16282_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_040119761.1|16326_17589_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004206886.1|17599_18550_+	DsbC family protein	NA	NA	NA	NA	NA
WP_004187443.1|18562_20650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000381802.1|21329_21863_+	aminoglycoside nucleotidyltransferase ANT(2'')-Ia	NA	NA	NA	NA	NA
WP_000027057.1|22258_23119_-	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
WP_001217881.1|23301_23859_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	98.4	2.0e-93
WP_071881521.1|24020_24326_+	DUF4158 domain-containing protein	NA	Q1MVP5	Enterobacteria_phage	97.9	7.3e-21
WP_001067855.1|24216_24921_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_071538079.1|24911_25094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002904004.1|25057_25918_+	class A extended-spectrum beta-lactamase SHV-12	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
WP_002210513.1|25938_26700_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
WP_137922728.1|27027_28236_-	methyl-accepting chemotaxis protein	NA	A0A1B0VAH3	Salmonella_phage	100.0	1.4e-51
WP_000608644.1|28485_29748_+|transposase	IS1380-like element ISEc9 family transposase	transposase	A0A1B0VDR3	Salmonella_phage	100.0	1.3e-39
WP_088169311.1|29911_30229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012954666.1|30237_30882_-	quinolone resistance pentapeptide repeat protein QnrB19	NA	NA	NA	NA	NA
WP_001067855.1|31559_32264_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_011152976.1|32470_33130_+	type A-1 chloramphenicol O-acetyltransferase	NA	G3CFL0	Escherichia_phage	99.1	4.2e-130
WP_032738601.1|33330_33708_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001067855.1|33955_34660_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000509966.1|35286_35892_-	DNA resolvase	NA	A0A1S5Y2X8	uncultured_archaeal_virus	35.3	5.5e-20
WP_001553819.1|35986_38884_+|transposase	Tn3-like element Tn5403 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	37.8	4.2e-182
39222:39236	attR	GCTGAAGGATCTGGA	NA	NA	NA	NA
>prophage 1
NZ_CP009853	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH4 plasmid pKPC-860, complete sequence	56557	0	55098	56557	integrase,transposase,protease	Burkholderia_phage(18.75%)	59	2606:2623	9790:9807
WP_108742639.1|1118_1781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001749988.1|2132_2702_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	43.2	5.2e-36
2606:2623	attL	CCTGATAGATTTGCTCAC	NA	NA	NA	NA
WP_015344971.1|2841_3126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000845048.1|3094_4108_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
WP_004201280.1|4263_4737_+	trimethoprim-resistant dihydrofolate reductase DfrA14	NA	G3MBI7	Bacillus_virus	28.9	8.4e-16
WP_001144737.1|4957_5224_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_001389365.1|5366_6131_+|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
WP_024139167.1|6172_6385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004098817.1|6391_7606_+	type II site-specific deoxyribonuclease	NA	E5E3X4	Burkholderia_phage	42.5	1.2e-34
WP_001288432.1|7639_9073_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	50.6	7.0e-106
WP_001749967.1|9454_9661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064577928.1|9665_10154_-	restriction endonuclease	NA	NA	NA	NA	NA
9790:9807	attR	GTGAGCAAATCTATCAGG	NA	NA	NA	NA
WP_001452736.1|10362_10674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001749965.1|10709_11024_-	KikA protein	NA	NA	NA	NA	NA
WP_001749964.1|11020_11365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024129965.1|11380_11731_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_001749963.1|11794_12529_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_000440698.1|12537_12819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001749962.1|12828_13122_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000496058.1|13171_13489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001749961.1|13488_16089_+	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA	NA
WP_001749960.1|16106_16820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001749959.1|16827_17055_+	IncN-type entry exclusion lipoprotein EexN	NA	NA	NA	NA	NA
WP_001749958.1|17070_18111_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_001257173.1|18193_18340_+	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_000646594.1|18329_19028_+	type IV secretion system protein	NA	NA	NA	NA	NA
WP_019706045.1|19101_19923_+	conjugal transfer protein TraO	NA	NA	NA	NA	NA
WP_000101710.1|19922_21083_+	TrbI/VirB10 family protein	NA	NA	NA	NA	NA
WP_000128596.1|21124_22120_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
WP_000792636.1|22119_22653_+	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	33.9	5.8e-21
WP_038421110.1|25738_28747_-|transposase	Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	64.3	0.0e+00
WP_004098835.1|28910_29477_+	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	82.6	3.5e-77
WP_001258875.1|29504_30212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000160641.1|30252_30867_-	TIR domain-containing protein	NA	NA	NA	NA	NA
WP_001159650.1|31035_31803_+	DUF1883 domain-containing protein	NA	S6BFN8	Thermus_phage	46.4	9.8e-30
WP_004152397.1|32894_34214_+|transposase	IS1182-like element ISKpn6 family transposase	transposase	Q9MBP7	Staphylococcus_prophage	24.2	1.9e-12
WP_004199234.1|34463_35345_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	NA	A0A1B0VBP7	Salmonella_phage	52.2	2.2e-73
WP_001067855.1|35869_36574_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_012561167.1|37146_37512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012561166.1|37511_40748_-	conjugative relaxase	NA	U5J9B0	Bacillus_phage	27.3	2.4e-05
WP_000342688.1|40747_42277_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001749975.1|42278_42695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020319858.1|43467_43605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001749973.1|43613_44330_+	StdB	NA	NA	NA	NA	NA
WP_000414913.1|44331_44700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048968061.1|44992_45226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001749971.1|45336_45657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000214483.1|45711_45891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000129958.1|46617_47127_-	antirestriction protein ArdA	NA	NA	NA	NA	NA
WP_012561126.1|48479_48812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001750002.1|49020_49305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001750003.1|49373_49733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000545925.1|49729_50026_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000932975.1|50911_51151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000881513.1|51160_51565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000447669.1|51622_52048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000861760.1|52462_52903_+	translesion error-prone DNA polymerase V autoproteolytic subunit MucA	NA	A0A1W6JNS2	Morganella_phage	48.8	1.2e-27
WP_001749980.1|52890_54156_+	translesion error-prone DNA polymerase V subunit MucB	NA	F1C5A5	Cronobacter_phage	53.8	2.2e-119
WP_001452808.1|54306_55098_+|protease	zinc metalloprotease	protease	NA	NA	NA	NA
