assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000770235.1_ASM77023v1	NZ_CP009614	Mycobacterium avium subsp. avium strain DJO-44271, complete genome	1	495261-495372	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	Orphan	CGCCGGCCGGACCGGCCGCCGGTGCACCCCCACCACCGCGGCT	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	NA,NA	NA|527aa|up_9|NZ_CP009614.1_483219_484800_-	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|338aa|up_8|NZ_CP009614.1_484829_485843_-	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family	NA|396aa|up_7|NZ_CP009614.1_485842_487030_-	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]	NA|310aa|up_6|NZ_CP009614.1_487026_487956_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|138aa|up_5|NZ_CP009614.1_488095_488509_+	cd07253, GLOD5, Human glyoxalase domain-containing protein 5 and similar proteins	NA|205aa|up_4|NZ_CP009614.1_491218_491833_+	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|268aa|up_3|NZ_CP009614.1_491852_492656_+	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|134aa|up_2|NZ_CP009614.1_492648_493050_+	COG1539, FolB, Dihydroneopterin aldolase [Coenzyme metabolism]	NA|183aa|up_1|NZ_CP009614.1_493046_493595_+	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]	NA|159aa|up_0|NZ_CP009614.1_493594_494071_+	pfam11377, DUF3180, Protein of unknown function (DUF3180)	NA|304aa|down_0|NZ_CP009614.1_495662_496574_+	COG5495, COG5495, Uncharacterized conserved protein [Function unknown]	NA|309aa|down_1|NZ_CP009614.1_496570_497497_+	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|144aa|down_2|NZ_CP009614.1_497496_497928_+	pfam02261, Asp_decarbox, Aspartate decarboxylase	NA|272aa|down_3|NZ_CP009614.1_497930_498746_+	PRK13318, PRK13318, type III pantothenate kinase	NA|500aa|down_4|NZ_CP009614.1_498792_500292_+	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|113aa|down_5|NZ_CP009614.1_500435_500774_+	pfam11774, Lsr2, Lsr2	NA|844aa|down_6|NZ_CP009614.1_501110_503642_+	CHL00095, clpC, Clp protease ATP binding subunit	NA|72aa|down_7|NZ_CP009614.1_503830_504046_+	pfam09489, CbtB, Probable cobalt transporter subunit (CbtB)	NA|259aa|down_8|NZ_CP009614.1_504061_504838_+	pfam09490, CbtA, Probable cobalt transporter subunit (CbtA)	NA|183aa|down_9|NZ_CP009614.1_504834_505383_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)
GCF_000770235.1_ASM77023v1	NZ_CP009614	Mycobacterium avium subsp. avium strain DJO-44271, complete genome	2	1374296-1374371	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	Orphan	GCAGGAGGAGCGGCGCTGATGTCT	24	1	1	1374320-1374347	NZ_CP009614.1_1457565-1457538	NA	1	1	Orphan	DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	NA|102aa|up_3|NZ_CP009614.1_1369739_1370045_+,NA	NA|411aa|up_9|NZ_CP009614.1_1361475_1362708_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|551aa|up_8|NZ_CP009614.1_1363317_1364970_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|473aa|up_7|NZ_CP009614.1_1364966_1366385_+	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase	NA|442aa|up_6|NZ_CP009614.1_1366388_1367714_+	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|361aa|up_5|NZ_CP009614.1_1367710_1368793_+	PRK07409, PRK07409, threonine synthase; Validated	NA|312aa|up_4|NZ_CP009614.1_1368834_1369770_+	PRK01212, PRK01212, homoserine kinase; Provisional	NA|102aa|up_3|NZ_CP009614.1_1369739_1370045_+	NA	NA|618aa|up_2|NZ_CP009614.1_1370037_1371891_+	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|81aa|up_1|NZ_CP009614.1_1371992_1372235_+	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|358aa|up_0|NZ_CP009614.1_1372331_1373405_+	PRK00591, prfA, peptide chain release factor 1; Validated	NA|408aa|down_0|NZ_CP009614.1_1375051_1376275_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|161aa|down_1|NZ_CP009614.1_1376490_1376973_+	pfam03899, ATP-synt_I, ATP synthase I chain	NA|253aa|down_2|NZ_CP009614.1_1376965_1377724_+	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|85aa|down_3|NZ_CP009614.1_1377802_1378057_+	PRK05880, PRK05880, F0F1 ATP synthase subunit C; Validated	NA|178aa|down_4|NZ_CP009614.1_1378066_1378600_+	PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated	NA|447aa|down_5|NZ_CP009614.1_1378607_1379948_+	PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional	NA|555aa|down_6|NZ_CP009614.1_1380015_1381680_+	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated	NA|305aa|down_7|NZ_CP009614.1_1381686_1382601_+	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated	NA|486aa|down_8|NZ_CP009614.1_1382629_1384087_+	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated	NA|122aa|down_9|NZ_CP009614.1_1384126_1384492_+	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated
GCF_000770235.1_ASM77023v1	NZ_CP009614	Mycobacterium avium subsp. avium strain DJO-44271, complete genome	3	2209696-2209778	3	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	Unclear	AGGAGCCGGGCGATTCAGCTTGGGCC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	NA|130aa|up_7|NZ_CP009614.1_2201463_2201853_+,NA|295aa|up_4|NZ_CP009614.1_2204043_2204928_+,NA|298aa|down_3|NZ_CP009614.1_2213094_2213988_+,NA|227aa|down_4|NZ_CP009614.1_2213991_2214672_-	NA|146aa|up_9|NZ_CP009614.1_2199756_2200194_+	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|413aa|up_8|NZ_CP009614.1_2200228_2201467_+	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|130aa|up_7|NZ_CP009614.1_2201463_2201853_+	NA	NA|242aa|up_6|NZ_CP009614.1_2201940_2202666_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|407aa|up_5|NZ_CP009614.1_2202662_2203883_-	PRK13375, pimE, mannosyltransferase; Provisional	NA|295aa|up_4|NZ_CP009614.1_2204043_2204928_+	NA	NA|163aa|up_3|NZ_CP009614.1_2204948_2205437_+	pfam16473, DUF5051, 3' exoribonuclease, RNase T-like	NA|463aa|up_2|NZ_CP009614.1_2205528_2206917_+	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|482aa|up_1|NZ_CP009614.1_2206913_2208359_-	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|397aa|up_0|NZ_CP009614.1_2208493_2209684_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|135aa|down_0|NZ_CP009614.1_2209859_2210264_+	pfam18367, Rv2175c_C, Rv2175c C-terminal domain of unknown function	NA|506aa|down_1|NZ_CP009614.1_2210257_2211775_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|350aa|down_2|NZ_CP009614.1_2211779_2212829_-	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|298aa|down_3|NZ_CP009614.1_2213094_2213988_+	NA	NA|227aa|down_4|NZ_CP009614.1_2213991_2214672_-	NA	NA|201aa|down_5|NZ_CP009614.1_2214796_2215399_-	COG0456, RimI, Acetyltransferases [General function prediction only]	NA|134aa|down_6|NZ_CP009614.1_2215791_2216193_+	pfam11239, DUF3040, Protein of unknown function (DUF3040)	NA|144aa|down_7|NZ_CP009614.1_2216629_2217061_+	COG2001, COG2001, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_8|NZ_CP009614.1_2217188_2218196_+	COG0275, COG0275, Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]	NA|425aa|down_9|NZ_CP009614.1_2218195_2219470_+	PHA03247, PHA03247, large tegument protein UL36; Provisional
GCF_000770235.1_ASM77023v1	NZ_CP009614	Mycobacterium avium subsp. avium strain DJO-44271, complete genome	4	2392749-2392855	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	Orphan	CGTTCGAGTGCCGCTTCGGCGTACGGCGCGCCGCGTTCGGC	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	NA|203aa|up_8|NZ_CP009614.1_2383845_2384454_+,NA|222aa|up_5|NZ_CP009614.1_2386505_2387171_-,NA	NA|361aa|up_9|NZ_CP009614.1_2382654_2383737_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|203aa|up_8|NZ_CP009614.1_2383845_2384454_+	NA	NA|210aa|up_7|NZ_CP009614.1_2384461_2385091_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|408aa|up_6|NZ_CP009614.1_2385184_2386408_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|222aa|up_5|NZ_CP009614.1_2386505_2387171_-	NA	NA|506aa|up_4|NZ_CP009614.1_2387264_2388782_+	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism]	NA|666aa|up_3|NZ_CP009614.1_2388800_2390798_+	pfam02958, EcKinase, Ecdysteroid kinase	NA|165aa|up_2|NZ_CP009614.1_2390794_2391289_+	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism]	NA|130aa|up_1|NZ_CP009614.1_2391369_2391759_+	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system	NA|193aa|up_0|NZ_CP009614.1_2391789_2392368_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|188aa|down_0|NZ_CP009614.1_2393547_2394111_+	cd01011, nicotinamidase, Nicotinamidase/pyrazinamidase (PZase)	NA|267aa|down_1|NZ_CP009614.1_2394110_2394911_+	pfam02136, NTF2, Nuclear transport factor 2 (NTF2) domain	NA|117aa|down_2|NZ_CP009614.1_2394924_2395275_-	pfam13564, DoxX_2, DoxX-like family	NA|311aa|down_3|NZ_CP009614.1_2395443_2396376_+	PRK09636, PRK09636, RNA polymerase sigma factor SigJ; Provisional	NA|443aa|down_4|NZ_CP009614.1_2396441_2397770_+	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|315aa|down_5|NZ_CP009614.1_2397766_2398711_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|281aa|down_6|NZ_CP009614.1_2398697_2399540_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|362aa|down_7|NZ_CP009614.1_2399542_2400628_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|323aa|down_8|NZ_CP009614.1_2400621_2401590_+	cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2	NA|96aa|down_9|NZ_CP009614.1_2401615_2401903_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)
GCF_000770235.1_ASM77023v1	NZ_CP009614	Mycobacterium avium subsp. avium strain DJO-44271, complete genome	5	2579637-2579735	5	CRISPRCasFinder	no		DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	Orphan	CGGTTGCGGCCCGACCCCCAGCGG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	NA,NA	NA|388aa|up_9|NZ_CP009614.1_2570005_2571169_-	cd01160, LCAD, Long chain acyl-CoA dehydrogenase	NA|273aa|up_8|NZ_CP009614.1_2571171_2571990_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|198aa|up_7|NZ_CP009614.1_2572097_2572691_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|295aa|up_6|NZ_CP009614.1_2572711_2573596_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|218aa|up_5|NZ_CP009614.1_2575577_2576231_-	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family	NA|237aa|up_4|NZ_CP009614.1_2576276_2576987_-	PRK07577, PRK07577, SDR family oxidoreductase	NA|146aa|up_3|NZ_CP009614.1_2577167_2577605_-	pfam00553, CBM_2, Cellulose binding domain	NA|281aa|up_2|NZ_CP009614.1_2577828_2578671_+	pfam12833, HTH_18, Helix-turn-helix domain	NA|134aa|up_1|NZ_CP009614.1_2578624_2579026_+	cd08355, TioX_like, Micromonospora sp	NA|105aa|up_0|NZ_CP009614.1_2579176_2579491_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|492aa|down_0|NZ_CP009614.1_2580530_2582006_+	PRK06524, PRK06524, biotin carboxylase-like protein; Validated	NA|392aa|down_1|NZ_CP009614.1_2582002_2583178_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|410aa|down_2|NZ_CP009614.1_2583174_2584404_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|148aa|down_3|NZ_CP009614.1_2584568_2585012_+	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|127aa|down_4|NZ_CP009614.1_2585071_2585452_-	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|140aa|down_5|NZ_CP009614.1_2585564_2585984_+	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|107aa|down_6|NZ_CP009614.1_2586296_2586617_+	pfam00226, DnaJ, DnaJ domain	NA|469aa|down_7|NZ_CP009614.1_2586669_2588076_-	pfam00668, Condensation, Condensation domain	NA|186aa|down_8|NZ_CP009614.1_2588725_2589283_+	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|254aa|down_9|NZ_CP009614.1_2589330_2590092_-	PRK06500, PRK06500, SDR family oxidoreductase
GCF_000770235.1_ASM77023v1	NZ_CP009614	Mycobacterium avium subsp. avium strain DJO-44271, complete genome	6	2720007-2720116	6	CRISPRCasFinder	no		DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	Orphan	TGCCCGTTGGGCGCCGGGGCGGCGGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	NA,NA	NA|411aa|up_9|NZ_CP009614.1_2704773_2706006_+	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional	NA|710aa|up_8|NZ_CP009614.1_2706010_2708140_-	PRK12320, PRK12320, hypothetical protein; Provisional	NA|495aa|up_7|NZ_CP009614.1_2708271_2709756_-	PRK08257, PRK08257, acetyl-CoA acetyltransferase; Validated	NA|815aa|up_6|NZ_CP009614.1_2709774_2712219_-	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]	NA|306aa|up_5|NZ_CP009614.1_2712408_2713326_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|283aa|up_4|NZ_CP009614.1_2713422_2714271_+	PRK07825, PRK07825, short chain dehydrogenase; Provisional	NA|805aa|up_3|NZ_CP009614.1_2714315_2716730_+	PRK05261, PRK05261, phosphoketolase	NA|252aa|up_2|NZ_CP009614.1_2716833_2717589_+	pfam02517, Abi, CAAX protease self-immunity	NA|343aa|up_1|NZ_CP009614.1_2717602_2718631_-	TIGR02822, putative_alcohol_dehydrogenase, zinc-binding alcohol dehydrogenase family protein	NA|92aa|up_0|NZ_CP009614.1_2718678_2718954_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|372aa|down_0|NZ_CP009614.1_2720388_2721504_-	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]	NA|255aa|down_1|NZ_CP009614.1_2721513_2722278_-	TIGR01581, Molybdenum_transport_system_permease_protein_modB	NA|370aa|down_2|NZ_CP009614.1_2722452_2723562_-	pfam09995, DUF2236, Uncharacterized protein conserved in bacteria (DUF2236)	NA|256aa|down_3|NZ_CP009614.1_2723821_2724589_-	cd13538, PBP2_ModA_like_1, Substrate binding domain of putative molybdate-binding protein;the type 2 periplasmic binding protein fold	NA|226aa|down_4|NZ_CP009614.1_2724863_2725541_+	PRK05884, PRK05884, SDR family oxidoreductase	NA|306aa|down_5|NZ_CP009614.1_2725594_2726512_+	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|128aa|down_6|NZ_CP009614.1_2726627_2727011_+	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|462aa|down_7|NZ_CP009614.1_2727189_2728575_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|141aa|down_8|NZ_CP009614.1_2728683_2729106_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|140aa|down_9|NZ_CP009614.1_2729541_2729961_+	COG3682, COG3682, Predicted transcriptional regulator [Transcription]
GCF_000770235.1_ASM77023v1	NZ_CP009614	Mycobacterium avium subsp. avium strain DJO-44271, complete genome	7	3349003-3349087	7	CRISPRCasFinder	no		DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	Orphan	CCTACCCCGCTTCGCGGCGCAGCGCGG	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	NA,NA	NA|362aa|up_9|NZ_CP009614.1_3340374_3341460_+	pfam08007, Cupin_4, Cupin superfamily protein	NA|113aa|up_8|NZ_CP009614.1_3341492_3341831_+	TIGR04529, hypothetical_protein, hemophore-related protein, Rv0203/Rv1174c family	NA|155aa|up_7|NZ_CP009614.1_3341864_3342329_-	pfam10756, bPH_6, Bacterial PH domain	NA|161aa|up_6|NZ_CP009614.1_3342325_3342808_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|426aa|up_5|NZ_CP009614.1_3342857_3344135_-	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|200aa|up_4|NZ_CP009614.1_3344256_3344856_-	PRK09289, PRK09289, riboflavin synthase	NA|236aa|up_3|NZ_CP009614.1_3344974_3345682_+	pfam07161, LppX_LprAFG, LppX_LprAFG lipoprotein	NA|519aa|up_2|NZ_CP009614.1_3345678_3347235_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|342aa|up_1|NZ_CP009614.1_3347231_3348257_-	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|233aa|up_0|NZ_CP009614.1_3348253_3348952_-	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated	NA|316aa|down_0|NZ_CP009614.1_3350452_3351400_-	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|276aa|down_1|NZ_CP009614.1_3351557_3352385_+	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]	NA|162aa|down_2|NZ_CP009614.1_3352390_3352876_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|656aa|down_3|NZ_CP009614.1_3353003_3354971_-	PRK14873, PRK14873, primosomal protein N'	NA|264aa|down_4|NZ_CP009614.1_3355055_3355847_-	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|321aa|down_5|NZ_CP009614.1_3355845_3356808_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|497aa|down_6|NZ_CP009614.1_3356853_3358344_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|289aa|down_7|NZ_CP009614.1_3358345_3359212_-	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family	NA|328aa|down_8|NZ_CP009614.1_3359382_3360366_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|189aa|down_9|NZ_CP009614.1_3360375_3360942_+	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase
GCF_000770235.1_ASM77023v1	NZ_CP009614	Mycobacterium avium subsp. avium strain DJO-44271, complete genome	8	3458966-3459042	8	CRISPRCasFinder	no		DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	Orphan	CAGTCGGCGTCATGGGCGGTCATC	24	1	6	3458990-3459018|3458990-3459018|3458990-3459018|3458990-3459018|3458990-3459018|3458990-3459018	NZ_CP009614.1_3666381-3666409|NZ_CP009614.1_3666434-3666462|NZ_CP009614.1_3693604-3693632|NZ_CP009614.1_3693657-3693685|NZ_CP009614.1_4968978-4969006|NZ_CP009614.1_3530981-3530953	NA	1	1	Orphan	DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	NA|226aa|up_0|NZ_CP009614.1_3456775_3457453_-,NA	NA|296aa|up_9|NZ_CP009614.1_3440760_3441648_+	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]	NA|551aa|up_8|NZ_CP009614.1_3441678_3443331_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|789aa|up_7|NZ_CP009614.1_3443334_3445701_-	TIGR00691, PppGpp_synthetase	NA|181aa|up_6|NZ_CP009614.1_3445744_3446287_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|558aa|up_5|NZ_CP009614.1_3446294_3447968_-	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold	NA|436aa|up_4|NZ_CP009614.1_3447972_3449280_-	PRK13022, secF, protein translocase subunit SecF	NA|109aa|up_3|NZ_CP009614.1_3451186_3451513_-	PRK05886, yajC, preprotein translocase subunit YajC; Validated	NA|450aa|up_2|NZ_CP009614.1_3451676_3453026_+	PRK06058, PRK06058, 4-aminobutyrate--2-oxoglutarate transaminase	NA|1174aa|up_1|NZ_CP009614.1_3453188_3456710_+	cd17632, AFD_CAR-like, adenylation domain of carboxylic acid reductase (CAR)	NA|226aa|up_0|NZ_CP009614.1_3456775_3457453_-	NA	NA|189aa|down_0|NZ_CP009614.1_3459633_3460200_-	PRK00039, ruvC, Holliday junction resolvase; Reviewed	NA|204aa|down_1|NZ_CP009614.1_3460381_3460993_+	pfam13785, DUF4178, Domain of unknown function (DUF4178)	NA|168aa|down_2|NZ_CP009614.1_3461012_3461516_+	pfam10936, DUF2617, Protein of unknown function DUF2617	NA|144aa|down_3|NZ_CP009614.1_3461512_3461944_+	pfam14042, DUF4247, Domain of unknown function (DUF4247)	NA|152aa|down_4|NZ_CP009614.1_3461988_3462444_+	pfam03994, DUF350, Domain of Unknown Function (DUF350)	NA|524aa|down_5|NZ_CP009614.1_3462440_3464012_+	PRK03612, PRK03612, polyamine aminopropyltransferase	NA|251aa|down_6|NZ_CP009614.1_3464022_3464775_-	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|199aa|down_7|NZ_CP009614.1_3464902_3465499_-	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA|279aa|down_8|NZ_CP009614.1_3465495_3466332_-	TIGR00189, Peroxisomal_acyl-coenzyme_A_thioester_hydrolase_1, acyl-CoA thioesterase II	NA|304aa|down_9|NZ_CP009614.1_3466341_3467253_-	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS
GCF_000770235.1_ASM77023v1	NZ_CP009614	Mycobacterium avium subsp. avium strain DJO-44271, complete genome	9	3530641-3530887	1	CRT	no		DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	Orphan	GCGGCGCGGTGATCGCAAGCGCGGCGC	27	2	2	3530668-3530695|3530723-3530750	NZ_CP009614.1_3530888-3530915|NZ_CP009614.1_3530888-3530915	NA	4	4	Orphan	DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	NA|176aa|up_5|NZ_CP009614.1_3524842_3525370_+,NA	NA|310aa|up_9|NZ_CP009614.1_3522082_3523012_-	pfam09678, Caa3_CtaG, Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG)	NA|115aa|up_8|NZ_CP009614.1_3523040_3523385_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|123aa|up_7|NZ_CP009614.1_3523582_3523951_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|251aa|up_6|NZ_CP009614.1_3524050_3524803_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]	NA|176aa|up_5|NZ_CP009614.1_3524842_3525370_+	NA	NA|177aa|up_4|NZ_CP009614.1_3525357_3525888_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|362aa|up_3|NZ_CP009614.1_3525865_3526951_-	pfam03969, AFG1_ATPase, AFG1-like ATPase	NA|255aa|up_2|NZ_CP009614.1_3526985_3527750_+	PRK14059, PRK14059, pyrimidine reductase family protein	NA|523aa|up_1|NZ_CP009614.1_3527755_3529324_+	pfam08386, Abhydrolase_4, TAP-like protein	NA|429aa|up_0|NZ_CP009614.1_3529352_3530639_+	pfam09594, GT87, Glycosyltransferase family 87	NA|135aa|down_0|NZ_CP009614.1_3530983_3531388_+	pfam01641, SelR, SelR domain	NA|411aa|down_1|NZ_CP009614.1_3532096_3533329_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|125aa|down_2|NZ_CP009614.1_3533418_3533793_+	pfam18741, MTES_1575, REase_MTES_1575	NA|251aa|down_3|NZ_CP009614.1_3533859_3534612_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|232aa|down_4|NZ_CP009614.1_3534608_3535304_-	COG3253, ywfI, Predicted heme peroxidase involved in anaerobic stress response [General function prediction only]	NA|452aa|down_5|NZ_CP009614.1_3535309_3536665_-	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|358aa|down_6|NZ_CP009614.1_3536661_3537735_-	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|274aa|down_7|NZ_CP009614.1_3537782_3538604_+	PRK07327, PRK07327, enoyl-CoA hydratase/isomerase family protein	NA|206aa|down_8|NZ_CP009614.1_3538731_3539349_+	pfam11452, DUF3000, Protein of unknown function (DUF3000)	NA|429aa|down_9|NZ_CP009614.1_3539350_3540637_+	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]
GCF_000770235.1_ASM77023v1	NZ_CP009614	Mycobacterium avium subsp. avium strain DJO-44271, complete genome	10	4241206-4241296	9	CRISPRCasFinder	no	DinG	DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	Type IV-A	AGCCCGGTGACGATGCCCGCCGCAGCGCGGCGG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,Cas14u_CAS-V,DinG,cas4,WYL	NA|71aa|up_7|NZ_CP009614.1_4233203_4233416_+,NA|96aa|up_4|NZ_CP009614.1_4236106_4236394_-,NA|199aa|up_3|NZ_CP009614.1_4236461_4237058_-,NA	NA|306aa|up_9|NZ_CP009614.1_4231655_4232573_-	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|118aa|up_8|NZ_CP009614.1_4232764_4233118_+	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|71aa|up_7|NZ_CP009614.1_4233203_4233416_+	NA	NA|379aa|up_6|NZ_CP009614.1_4233491_4234628_-	pfam00823, PPE, PPE family	NA|379aa|up_5|NZ_CP009614.1_4234737_4235874_-	pfam00823, PPE, PPE family	NA|96aa|up_4|NZ_CP009614.1_4236106_4236394_-	NA	NA|199aa|up_3|NZ_CP009614.1_4236461_4237058_-	NA	NA|291aa|up_2|NZ_CP009614.1_4237097_4237970_-	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family	NA|585aa|up_1|NZ_CP009614.1_4237966_4239721_-	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]	NA|472aa|up_0|NZ_CP009614.1_4239777_4241193_-	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed	NA|156aa|down_0|NZ_CP009614.1_4241346_4241814_+	pfam13772, AIG2_2, AIG2-like family	NA|393aa|down_1|NZ_CP009614.1_4241836_4243015_-	cd08014, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|401aa|down_2|NZ_CP009614.1_4243011_4244214_-	cd05672, M20_ACY1L2-like, M20 Peptidase aminoacylase 1-like protein 2-like, amidohydrolase subfamily	NA|219aa|down_3|NZ_CP009614.1_4244259_4244916_-	pfam01083, Cutinase, Cutinase	NA|272aa|down_4|NZ_CP009614.1_4245128_4245944_+	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional	NA|258aa|down_5|NZ_CP009614.1_4247380_4248154_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|277aa|down_6|NZ_CP009614.1_4248318_4249149_+	pfam04185, Phosphoesterase, Phosphoesterase family	NA|438aa|down_7|NZ_CP009614.1_4249174_4250488_+	PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional	NA|328aa|down_8|NZ_CP009614.1_4250520_4251504_+	PRK13685, PRK13685, hypothetical protein; Provisional	NA|336aa|down_9|NZ_CP009614.1_4251522_4252530_-	PRK13685, PRK13685, hypothetical protein; Provisional
