assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000769405.2_CC275e2020	NZ_CP053439	Rhizobium leguminosarum bv. trifolii strain CC275e chromosome, complete genome	1	577333-577429	1	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh	Orphan	TATGCATGTCGCCCAAAAGTGTGCAGCGGTTTTGGG	36	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,PD-DExK	NA|189aa|up_3|NZ_CP053439.1_570564_571131_-,NA|203aa|down_0|NZ_CP053439.1_577471_578080_-	NA|705aa|up_9|NZ_CP053439.1_561693_563808_-	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|770aa|up_8|NZ_CP053439.1_564027_566337_+	COG2183, Tex, Transcriptional accessory protein [Transcription]	NA|420aa|up_7|NZ_CP053439.1_566470_567730_+	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]	NA|194aa|up_6|NZ_CP053439.1_567797_568379_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|271aa|up_5|NZ_CP053439.1_568535_569348_+	COG3713, OmpV, Outer membrane protein V [Cell envelope biogenesis, outer membrane]	NA|320aa|up_4|NZ_CP053439.1_569509_570469_+	PRK12878, ubiA, 4-hydroxybenzoate octaprenyltransferase	NA|189aa|up_3|NZ_CP053439.1_570564_571131_-	NA	NA|1112aa|up_2|NZ_CP053439.1_571431_574767_+	pfam06748, DUF1217, Protein of unknown function (DUF1217)	NA|479aa|up_1|NZ_CP053439.1_574817_576254_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|325aa|up_0|NZ_CP053439.1_576289_577264_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|203aa|down_0|NZ_CP053439.1_577471_578080_-	NA	NA|415aa|down_1|NZ_CP053439.1_578498_579743_+	COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]	NA|160aa|down_2|NZ_CP053439.1_579988_580468_+	pfam07886, BA14K, BA14K-like protein	NA|332aa|down_3|NZ_CP053439.1_580712_581708_-	cd12834, ZntB_u1, Uncharacterized bacterial subgroup of the Salmonella typhimurium Zn2+ transporter ZntB-like subfamily	NA|593aa|down_4|NZ_CP053439.1_581916_583695_+	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5	NA|252aa|down_5|NZ_CP053439.1_583704_584460_+	PRK06023, PRK06023, crotonase/enoyl-CoA hydratase family protein	NA|337aa|down_6|NZ_CP053439.1_584539_585550_-	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain	NA|417aa|down_7|NZ_CP053439.1_585552_586803_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|262aa|down_8|NZ_CP053439.1_586799_587585_-	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|332aa|down_9|NZ_CP053439.1_587678_588674_+	pfam14415, DUF4424, Domain of unknown function (DUF4424)
GCF_000769405.2_CC275e2020	NZ_CP053439	Rhizobium leguminosarum bv. trifolii strain CC275e chromosome, complete genome	2	997237-997321	2	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh	Orphan	AGCAATTCCAGGAAAAGTGCGAAG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,PD-DExK	NA|72aa|up_9|NZ_CP053439.1_989078_989294_+,NA|116aa|down_3|NZ_CP053439.1_1001328_1001676_+,NA|54aa|down_5|NZ_CP053439.1_1002706_1002868_+,NA|60aa|down_6|NZ_CP053439.1_1002905_1003085_-	NA|72aa|up_9|NZ_CP053439.1_989078_989294_+	NA	NA|786aa|up_8|NZ_CP053439.1_989503_991861_+	PRK12647, PRK12647, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|140aa|up_7|NZ_CP053439.1_991865_992285_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|126aa|up_6|NZ_CP053439.1_992284_992662_+	PRK12658, PRK12658, Na+/H+ antiporter subunit C	NA|518aa|up_5|NZ_CP053439.1_992729_994283_+	PRK12663, PRK12663, Na+/H+ antiporter subunit D	NA|158aa|up_4|NZ_CP053439.1_994279_994753_+	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|118aa|up_3|NZ_CP053439.1_994749_995103_+	PRK12599, PRK12599, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|111aa|up_2|NZ_CP053439.1_995099_995432_+	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|144aa|up_1|NZ_CP053439.1_995872_996304_+	COG4957, COG4957, Predicted transcriptional regulator [Transcription]	NA|141aa|up_0|NZ_CP053439.1_996690_997113_-	COG2166, sufE, Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]	NA|165aa|down_0|NZ_CP053439.1_997504_997999_-	pfam17264, DUF5330, Family of unknown function (DUF5330)	NA|514aa|down_1|NZ_CP053439.1_998450_999992_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|318aa|down_2|NZ_CP053439.1_999963_1000917_+	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	NA|116aa|down_3|NZ_CP053439.1_1001328_1001676_+	NA	NA|256aa|down_4|NZ_CP053439.1_1001847_1002615_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|54aa|down_5|NZ_CP053439.1_1002706_1002868_+	NA	NA|60aa|down_6|NZ_CP053439.1_1002905_1003085_-	NA	NA|346aa|down_7|NZ_CP053439.1_1003238_1004276_-	pfam12852, Cupin_6, Cupin	NA|325aa|down_8|NZ_CP053439.1_1004334_1005309_+	PRK06196, PRK06196, oxidoreductase; Provisional	NA|484aa|down_9|NZ_CP053439.1_1005444_1006896_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
GCF_000769405.2_CC275e2020	NZ_CP053439	Rhizobium leguminosarum bv. trifolii strain CC275e chromosome, complete genome	3	1647060-1647151	3	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh	Orphan	AAGAAGGCCGCACCGAAGAAGAAGGCTGC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,PD-DExK	NA|156aa|up_5|NZ_CP053439.1_1640018_1640486_+,NA|103aa|down_9|NZ_CP053439.1_1657648_1657957_+	NA|116aa|up_9|NZ_CP053439.1_1635762_1636110_+	COG1862, YajC, Preprotein translocase subunit YajC [Intracellular trafficking and secretion]	NA|847aa|up_8|NZ_CP053439.1_1636155_1638696_+	PRK14726, PRK14726, protein translocase subunit SecDF	NA|129aa|up_7|NZ_CP053439.1_1638700_1639087_+	COG3737, COG3737, Uncharacterized conserved protein [Function unknown]	NA|286aa|up_6|NZ_CP053439.1_1639089_1639947_+	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]	NA|156aa|up_5|NZ_CP053439.1_1640018_1640486_+	NA	NA|478aa|up_4|NZ_CP053439.1_1640591_1642025_-	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|48aa|up_3|NZ_CP053439.1_1642118_1642262_-	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown]	NA|49aa|up_2|NZ_CP053439.1_1642556_1642703_-	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown]	NA|368aa|up_1|NZ_CP053439.1_1643574_1644678_+	COG4872, COG4872, Predicted membrane protein [Function unknown]	NA|197aa|up_0|NZ_CP053439.1_1644674_1645265_+	pfam14345, GDYXXLXY, GDYXXLXY protein	NA|591aa|down_0|NZ_CP053439.1_1647905_1649678_-	smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM	NA|270aa|down_1|NZ_CP053439.1_1649838_1650648_-	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1	NA|469aa|down_2|NZ_CP053439.1_1650705_1652112_-	PRK05249, PRK05249, Si-specific NAD(P)(+) transhydrogenase	NA|396aa|down_3|NZ_CP053439.1_1652330_1653518_-	pfam01070, FMN_dh, FMN-dependent dehydrogenase	NA|77aa|down_4|NZ_CP053439.1_1653970_1654201_-	pfam12728, HTH_17, Helix-turn-helix domain	NA|182aa|down_5|NZ_CP053439.1_1654660_1655206_-	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal	NA|124aa|down_6|NZ_CP053439.1_1655359_1655731_+	cd08359, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|290aa|down_7|NZ_CP053439.1_1655784_1656654_+	PRK03592, PRK03592, haloalkane dehalogenase; Provisional	NA|293aa|down_8|NZ_CP053439.1_1656699_1657578_+	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|103aa|down_9|NZ_CP053439.1_1657648_1657957_+	NA
GCF_000769405.2_CC275e2020	NZ_CP053439	Rhizobium leguminosarum bv. trifolii strain CC275e chromosome, complete genome	4	1747928-1748074	4	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh	Orphan	TTCGTCGGCGTGGTTGGCGTTCCCGG	26	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,WYL,DEDDh,PD-DExK	NA|138aa|up_9|NZ_CP053439.1_1735739_1736153_+,NA|116aa|down_2|NZ_CP053439.1_1751539_1751887_-,NA|60aa|down_3|NZ_CP053439.1_1752342_1752522_+,NA|104aa|down_4|NZ_CP053439.1_1752638_1752950_-,NA|251aa|down_6|NZ_CP053439.1_1753958_1754711_+	NA|138aa|up_9|NZ_CP053439.1_1735739_1736153_+	NA	NA|406aa|up_8|NZ_CP053439.1_1736375_1737593_+	PRK09148, PRK09148, LL-diaminopimelate aminotransferase	NA|442aa|up_7|NZ_CP053439.1_1737654_1738980_+	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|85aa|up_6|NZ_CP053439.1_1739142_1739397_+	pfam15829, DUF4711, Domain of unknown function (DUF4711)	NA|601aa|up_5|NZ_CP053439.1_1739581_1741384_+	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|356aa|up_4|NZ_CP053439.1_1742174_1743242_-	COG3108, COG3108, Uncharacterized protein conserved in bacteria [Function unknown]	NA|147aa|up_3|NZ_CP053439.1_1743408_1743849_-	TIGR00068, Lactoylglutathione_lyase, lactoylglutathione lyase	NA|193aa|up_2|NZ_CP053439.1_1744044_1744623_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|163aa|up_1|NZ_CP053439.1_1744625_1745114_+	pfam02643, DUF192, Uncharacterized ACR, COG1430	NA|102aa|up_0|NZ_CP053439.1_1745891_1746197_+	pfam04800, ETC_C1_NDUFA4, ETC complex I subunit conserved region	NA|280aa|down_0|NZ_CP053439.1_1749953_1750793_+	pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase	NA|97aa|down_1|NZ_CP053439.1_1751108_1751399_-	pfam06169, DUF982, Protein of unknown function (DUF982)	NA|116aa|down_2|NZ_CP053439.1_1751539_1751887_-	NA	NA|60aa|down_3|NZ_CP053439.1_1752342_1752522_+	NA	NA|104aa|down_4|NZ_CP053439.1_1752638_1752950_-	NA	NA|150aa|down_5|NZ_CP053439.1_1753111_1753561_-	pfam12200, DUF3597, Domain of unknown function (DUF3597)	NA|251aa|down_6|NZ_CP053439.1_1753958_1754711_+	NA	NA|258aa|down_7|NZ_CP053439.1_1754769_1755543_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|385aa|down_8|NZ_CP053439.1_1755577_1756732_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|401aa|down_9|NZ_CP053439.1_1756733_1757936_-	COG4597, BatB, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
