The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP053439	Rhizobium leguminosarum bv. trifolii strain CC275e chromosome, complete genome	4835120	1249841	1258853	4835120		Aeromonas_phage(14.29%)	9	NA	NA
WP_003558306.1|1249841_1251140_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	51.0	1.9e-97
WP_003547190.1|1251149_1251626_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_033180394.1|1251629_1252751_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	33.5	4.6e-36
WP_033180393.1|1252750_1253362_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	35.4	1.2e-17
WP_033180392.1|1253441_1254311_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	59.2	6.8e-96
WP_033180391.1|1254321_1255209_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_033180390.1|1255212_1256268_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.5	4.1e-95
WP_033180389.1|1256285_1256852_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A218MN57	uncultured_virus	42.5	1.1e-33
WP_033180388.1|1256876_1258853_-	hypothetical protein	NA	A0A0G2Y9S0	Acanthamoeba_polyphaga_mimivirus	26.9	8.7e-06
>prophage 2
NZ_CP053439	Rhizobium leguminosarum bv. trifolii strain CC275e chromosome, complete genome	4835120	1327343	1338126	4835120	protease	Bacillus_phage(16.67%)	7	NA	NA
WP_171816901.1|1327343_1328759_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	33.5	5.8e-12
WP_003547334.1|1329050_1329680_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	59.2	9.4e-63
WP_003547337.1|1329983_1331261_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.6	7.9e-133
WP_033180342.1|1331662_1334080_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	49.5	1.5e-204
WP_003558438.1|1334286_1334562_+	HU family DNA-binding protein	NA	A0A172Q061	Acinetobacter_phage	34.1	7.1e-07
WP_082229724.1|1334932_1335832_+	DMT family transporter	NA	NA	NA	NA	NA
WP_171816900.1|1335915_1338126_+	esterase-like activity of phytase family protein	NA	E3SJA5	Synechococcus_phage	41.2	1.4e-81
>prophage 3
NZ_CP053439	Rhizobium leguminosarum bv. trifolii strain CC275e chromosome, complete genome	4835120	1625299	1638696	4835120	tRNA	uncultured_Mediterranean_phage(90.91%)	13	NA	NA
WP_033179905.1|1625299_1626313_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	2.1e-24
WP_033179906.1|1626331_1627189_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	38.5	5.6e-34
WP_033179907.1|1627185_1627902_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.2	3.7e-39
WP_033179908.1|1628085_1628277_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	72.1	8.9e-09
WP_033179909.1|1628328_1628940_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_018241797.1|1628936_1629764_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.5	5.2e-53
WP_033179910.1|1629963_1631247_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	1.8e-97
WP_033179911.1|1631251_1632025_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	29.8	2.0e-22
WP_033179912.1|1632021_1632675_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.1	8.9e-16
WP_033179913.1|1632921_1634526_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	29.2	5.1e-12
WP_033179914.1|1634683_1635556_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_003558894.1|1635762_1636110_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.1	2.4e-12
WP_033179915.1|1636155_1638696_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	48.6	2.2e-57
>prophage 4
NZ_CP053439	Rhizobium leguminosarum bv. trifolii strain CC275e chromosome, complete genome	4835120	1932356	1942580	4835120		uncultured_Mediterranean_phage(83.33%)	9	NA	NA
WP_033182639.1|1932356_1935278_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	61.9	0.0e+00
WP_033182640.1|1935560_1936073_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	73.7	1.2e-44
WP_033182641.1|1936172_1936820_-	MarC family protein	NA	NA	NA	NA	NA
WP_033182642.1|1937056_1939894_+	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	41.9	2.2e-74
WP_003539654.1|1940230_1940386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033182643.1|1940508_1940796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003559385.1|1940932_1941427_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	35.9	6.7e-24
WP_003559387.1|1941469_1942042_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	53.2	5.7e-43
WP_003559389.1|1942070_1942580_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	59.4	4.2e-45
>prophage 5
NZ_CP053439	Rhizobium leguminosarum bv. trifolii strain CC275e chromosome, complete genome	4835120	3032737	3046189	4835120		Vibrio_phage(25.0%)	10	NA	NA
WP_033180230.1|3032737_3034795_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.6	1.7e-36
WP_003561203.1|3035262_3035610_-	GFA family protein	NA	NA	NA	NA	NA
WP_011652887.1|3035619_3036657_-	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	68.6	7.1e-15
WP_033180229.1|3036767_3037955_-	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	28.6	1.8e-38
WP_033180228.1|3038019_3038748_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	42.4	1.8e-49
WP_033180227.1|3038816_3040685_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.7	1.4e-77
WP_033180226.1|3040684_3042694_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.7	1.9e-88
WP_033180224.1|3043364_3044255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_018074031.1|3044258_3044714_-	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	38.7	5.3e-15
WP_033180668.1|3044983_3046189_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.8	7.4e-40
>prophage 6
NZ_CP053439	Rhizobium leguminosarum bv. trifolii strain CC275e chromosome, complete genome	4835120	3917178	3927189	4835120		Mycobacterium_phage(25.0%)	9	NA	NA
WP_033179810.1|3917178_3917889_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	50.0	1.4e-51
WP_033179809.1|3917888_3918245_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_033179808.1|3918241_3918976_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	38.2	6.9e-41
WP_033180630.1|3918980_3920195_-	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	29.7	7.0e-14
WP_033180629.1|3920299_3921274_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	74.4	6.2e-138
WP_033179807.1|3921361_3923566_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	52.1	1.5e-211
WP_033179806.1|3923544_3923949_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	44.0	1.1e-16
WP_017968025.1|3923963_3924185_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	53.4	3.6e-17
WP_033179804.1|3924936_3927189_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	41.2	7.4e-126
