The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009496	Mycolicibacterium smegmatis strain INHR2 chromosome, complete genome	6988302	432230	440689	6988302		Shahe_endorna-like_virus(28.57%)	7	NA	NA
WP_011726901.1|432230_433097_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	A0A291LA53	Escherichia_phage	58.0	7.3e-90
WP_014876757.1|433603_434872_+	glycosyltransferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	37.3	4.3e-06
WP_014876758.1|434989_436063_+	SDR family NAD(P)-dependent oxidoreductase	NA	A0A0E3IB24	Synechococcus_phage	26.9	2.3e-21
WP_011726904.1|436311_437046_+	class I SAM-dependent methyltransferase	NA	A0A0B4ZZS0	Mycobacterium_phage	32.3	1.8e-12
WP_014876760.1|437297_438098_+	macrocin O-methyltransferase	NA	A0A2R8FDY2	Brazilian_cedratvirus	53.3	1.4e-58
WP_011726906.1|438131_439400_+	glycosyltransferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	37.1	7.3e-06
WP_042510611.1|439576_440689_+	acyltransferase	NA	A9YX16	Burkholderia_phage	29.5	4.9e-22
>prophage 2
NZ_CP009496	Mycolicibacterium smegmatis strain INHR2 chromosome, complete genome	6988302	2213578	2221145	6988302		Mycobacterium_phage(50.0%)	7	NA	NA
WP_011728185.1|2213578_2214787_-	Fic family protein	NA	D7RWK9	Brochothrix_phage	25.0	1.3e-07
WP_003893512.1|2214845_2215097_+	hypothetical protein	NA	A0A0A7S2B5	Mycobacterium_phage	89.6	9.0e-33
WP_011728186.1|2215111_2215810_+	hypothetical protein	NA	A0A0A7RXU2	Mycobacterium_phage	93.5	3.6e-124
WP_011728187.1|2215820_2216261_-	SecB-like chaperone SecBL	NA	A0A160DCY1	Gordonia_phage	38.8	6.4e-18
WP_003893515.1|2216257_2216854_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003893516.1|2217075_2217486_+	hypothetical protein	NA	A0A0A7RVJ2	Mycobacterium_phage	90.4	1.4e-70
WP_011728188.1|2217500_2221145_+	hypothetical protein	NA	Q854Y3	Mycobacterium_virus	92.5	0.0e+00
>prophage 3
NZ_CP009496	Mycolicibacterium smegmatis strain INHR2 chromosome, complete genome	6988302	4184777	4239534	6988302	transposase,integrase	Shigella_phage(12.5%)	48	4178883:4178899	4242621:4242637
4178883:4178899	attL	GCCCGGTCAGTGCCAGC	NA	NA	NA	NA
WP_085976167.1|4184777_4185943_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	36.4	4.2e-32
WP_011729554.1|4186021_4186708_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_011729555.1|4186717_4188157_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_014877938.1|4188175_4189717_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_011729557.1|4189854_4190697_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_011729558.1|4190749_4191880_-	CoA transferase	NA	NA	NA	NA	NA
WP_011729559.1|4191876_4193544_-	cyclohexanecarboxylate-CoA ligase	NA	Q75ZG1	Hepacivirus	25.0	1.1e-28
WP_011729560.1|4193546_4194602_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_011729561.1|4194598_4195375_-	naphthoate synthase	NA	NA	NA	NA	NA
WP_011729562.1|4195376_4196258_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_011729563.1|4196267_4197158_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_011729564.1|4197177_4197942_-	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA	NA
WP_011729565.1|4197938_4199162_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_011729566.1|4199158_4199947_-	crotonase	NA	NA	NA	NA	NA
WP_042510654.1|4199943_4201122_-	CoA transferase	NA	NA	NA	NA	NA
WP_011729568.1|4201432_4202173_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011729569.1|4202321_4203683_-	MHS family MFS transporter	NA	Q6JIH2	Burkholderia_virus	31.3	8.0e-43
WP_011729570.1|4204044_4204944_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014877941.1|4204940_4206233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011729572.1|4206284_4207067_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_014877942.1|4207231_4207990_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_011729574.1|4208212_4209616_-|transposase	IS1380-like element ISMsm12 family transposase	transposase	NA	NA	NA	NA
WP_011729575.1|4209651_4210488_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011729576.1|4210586_4211177_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011729578.1|4211332_4212184_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_011729580.1|4215642_4216194_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA	NA
WP_011729581.1|4216231_4216816_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_011729582.1|4216815_4217034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014877947.1|4217415_4218393_+	aliphatic nitrilase	NA	NA	NA	NA	NA
WP_080590936.1|4218773_4219757_+	MFS transporter	NA	NA	NA	NA	NA
WP_011729584.1|4219782_4221216_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_011729585.1|4221411_4222299_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011729586.1|4222469_4223096_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011729587.1|4223231_4223525_+	DUF1330 domain-containing protein	NA	NA	NA	NA	NA
WP_011729588.1|4223568_4224507_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011729589.1|4224811_4225375_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_011729590.1|4225737_4226715_+	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_011729591.1|4226769_4228044_+	MFS transporter	NA	NA	NA	NA	NA
WP_162139608.1|4228163_4228991_-	alpha/beta hydrolase fold domain-containing protein	NA	M1PGN2	Moumouvirus	28.5	4.6e-25
WP_011729593.1|4229265_4230201_+	acetaldehyde dehydrogenase (acetylating)	NA	G9E526	Ostreococcus_lucimarinus_virus	31.8	1.8e-33
WP_011729594.1|4230197_4231238_+	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	32.8	1.2e-43
WP_011729595.1|4231246_4231498_-	ferredoxin	NA	NA	NA	NA	NA
WP_011729596.1|4231494_4232448_-	oxidoreductase	NA	NA	NA	NA	NA
WP_011729597.1|4232450_4232909_-	cytochrome P450	NA	NA	NA	NA	NA
WP_014877954.1|4234101_4235211_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_011729600.1|4235207_4237433_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	26.0	1.2e-08
WP_011729601.1|4237422_4237851_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011727856.1|4238214_4239534_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	100.0	2.8e-250
4242621:4242637	attR	GCCCGGTCAGTGCCAGC	NA	NA	NA	NA
>prophage 4
NZ_CP009496	Mycolicibacterium smegmatis strain INHR2 chromosome, complete genome	6988302	6214388	6252007	6988302	transposase,holin,protease	Mycobacterium_phage(58.33%)	34	NA	NA
WP_011726768.1|6214388_6215795_+|transposase	IS1380-like element ISMsm3 family transposase	transposase	A0A222ZN33	Mycobacterium_phage	43.9	5.1e-85
WP_162139567.1|6215888_6217061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011726739.1|6217147_6218470_+|transposase	ISL3-like element IS1096 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	100.0	1.1e-254
WP_011726740.1|6218477_6219179_-	plasmid pRiA4b ORF-3 family protein	NA	A0A2H4PDG5	Mycobacterium_phage	99.6	2.0e-138
WP_003897552.1|6219762_6220119_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_011731077.1|6220115_6220991_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011731078.1|6221213_6222422_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_011731079.1|6222503_6224195_+	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	31.7	2.5e-17
WP_011726739.1|6224252_6225575_+|transposase	ISL3-like element IS1096 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	100.0	1.1e-254
WP_011726740.1|6225582_6226284_-	plasmid pRiA4b ORF-3 family protein	NA	A0A2H4PDG5	Mycobacterium_phage	99.6	2.0e-138
WP_011731080.1|6226446_6229257_-	type I DNA topoisomerase	NA	A0A2K9L5F8	Tupanvirus	31.3	1.4e-97
WP_003897557.1|6229360_6229954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011562175.1|6230049_6230253_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	56.2	1.5e-14
WP_003897559.1|6230554_6232885_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_011726739.1|6233156_6234479_+|transposase	ISL3-like element IS1096 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	100.0	1.1e-254
WP_011726740.1|6234486_6235188_-	plasmid pRiA4b ORF-3 family protein	NA	A0A2H4PDG5	Mycobacterium_phage	99.6	2.0e-138
WP_011731081.1|6235433_6236450_+	DUF5593 domain-containg protein	NA	NA	NA	NA	NA
WP_011731083.1|6236534_6236861_-	flp pilus-assembly TadE/G-like family protein	NA	NA	NA	NA	NA
WP_003897562.1|6236871_6237138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003897563.1|6237194_6237404_-	DUF4244 domain-containing protein	NA	NA	NA	NA	NA
WP_011731085.1|6237437_6238007_-	type II secretion system protein F	NA	NA	NA	NA	NA
WP_029104598.1|6238003_6238786_-	membrane protein	NA	NA	NA	NA	NA
WP_011731088.1|6238782_6239940_-	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA	NA
WP_042510600.1|6239936_6241025_-	ATPase AAA	NA	NA	NA	NA	NA
WP_011731091.1|6241458_6242340_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_011731092.1|6242778_6243561_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011731093.1|6243655_6244636_+	2-dehydro-3-deoxygalactonokinase	NA	NA	NA	NA	NA
WP_011731094.1|6244632_6245259_+	2-dehydro-3-deoxy-6-phosphogalactonate aldolase	NA	NA	NA	NA	NA
WP_011731095.1|6245255_6246404_+	galactonate dehydratase	NA	Q6A202	Oenococcus_phage	34.8	5.0e-54
WP_011731096.1|6246409_6247741_+	MFS transporter	NA	NA	NA	NA	NA
WP_014878579.1|6247742_6248498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014878580.1|6248625_6250581_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	39.2	9.7e-82
WP_162139568.1|6250644_6251361_-|protease	serine protease	protease	NA	NA	NA	NA
WP_003897577.1|6251497_6252007_+|holin	phage holin family protein	holin	NA	NA	NA	NA
