The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009494	Mycolicibacterium smegmatis MC2 155 chromosome, complete genome	6988269	432230	440689	6988269		Shahe_endorna-like_virus(28.57%)	7	NA	NA
WP_011726901.1|432230_433097_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	A0A291LA53	Escherichia_phage	58.0	7.3e-90
WP_014876757.1|433603_434872_+	glycosyltransferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	37.3	4.3e-06
WP_014876758.1|434989_436063_+	SDR family NAD(P)-dependent oxidoreductase	NA	A0A0E3IB24	Synechococcus_phage	26.9	2.3e-21
WP_011726904.1|436311_437046_+	class I SAM-dependent methyltransferase	NA	A0A0B4ZZS0	Mycobacterium_phage	32.3	1.8e-12
WP_014876760.1|437297_438098_+	macrocin O-methyltransferase	NA	A0A2R8FDY2	Brazilian_cedratvirus	53.3	1.4e-58
WP_011726906.1|438131_439400_+	glycosyltransferase	NA	A0A1L3KK54	Shahe_endorna-like_virus	37.1	7.3e-06
WP_042510611.1|439576_440689_+	acyltransferase	NA	A9YX16	Burkholderia_phage	29.5	4.9e-22
>prophage 2
NZ_CP009494	Mycolicibacterium smegmatis MC2 155 chromosome, complete genome	6988269	2213558	2221125	6988269		Mycobacterium_phage(50.0%)	7	NA	NA
WP_011728185.1|2213558_2214767_-	Fic family protein	NA	D7RWK9	Brochothrix_phage	25.0	1.3e-07
WP_003893512.1|2214825_2215077_+	hypothetical protein	NA	A0A0A7S2B5	Mycobacterium_phage	89.6	9.0e-33
WP_011728186.1|2215091_2215790_+	hypothetical protein	NA	A0A0A7RXU2	Mycobacterium_phage	93.5	3.6e-124
WP_011728187.1|2215800_2216241_-	SecB-like chaperone SecBL	NA	A0A160DCY1	Gordonia_phage	38.8	6.4e-18
WP_003893515.1|2216237_2216834_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003893516.1|2217055_2217466_+	hypothetical protein	NA	A0A0A7RVJ2	Mycobacterium_phage	90.4	1.4e-70
WP_011728188.1|2217480_2221125_+	hypothetical protein	NA	Q854Y3	Mycobacterium_virus	92.5	0.0e+00
>prophage 3
NZ_CP009494	Mycolicibacterium smegmatis MC2 155 chromosome, complete genome	6988269	4184751	4239508	6988269	transposase,integrase	Shigella_phage(12.5%)	48	4178857:4178873	4242595:4242611
4178857:4178873	attL	GCCCGGTCAGTGCCAGC	NA	NA	NA	NA
WP_085976167.1|4184751_4185917_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	36.4	4.2e-32
WP_011729554.1|4185995_4186682_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_011729555.1|4186691_4188131_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA	NA
WP_014877938.1|4188149_4189691_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_011729557.1|4189828_4190671_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_011729558.1|4190723_4191854_-	CoA transferase	NA	NA	NA	NA	NA
WP_011729559.1|4191850_4193518_-	cyclohexanecarboxylate-CoA ligase	NA	Q75ZG1	Hepacivirus	25.0	1.1e-28
WP_011729560.1|4193520_4194576_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_011729561.1|4194572_4195349_-	naphthoate synthase	NA	NA	NA	NA	NA
WP_011729562.1|4195350_4196232_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_011729563.1|4196241_4197132_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_011729564.1|4197151_4197916_-	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA	NA
WP_011729565.1|4197912_4199136_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_011729566.1|4199132_4199921_-	crotonase	NA	NA	NA	NA	NA
WP_042510654.1|4199917_4201096_-	CoA transferase	NA	NA	NA	NA	NA
WP_011729568.1|4201406_4202147_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011729569.1|4202295_4203657_-	MHS family MFS transporter	NA	Q6JIH2	Burkholderia_virus	31.3	8.0e-43
WP_011729570.1|4204018_4204918_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014877941.1|4204914_4206207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011729572.1|4206258_4207041_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_014877942.1|4207205_4207964_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_011729574.1|4208186_4209590_-|transposase	IS1380-like element ISMsm12 family transposase	transposase	NA	NA	NA	NA
WP_011729575.1|4209625_4210462_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_011729576.1|4210560_4211151_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011729578.1|4211306_4212158_-	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_011729580.1|4215616_4216168_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA	NA
WP_011729581.1|4216205_4216790_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_011729582.1|4216789_4217008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014877947.1|4217389_4218367_+	aliphatic nitrilase	NA	NA	NA	NA	NA
WP_080590936.1|4218747_4219731_+	MFS transporter	NA	NA	NA	NA	NA
WP_011729584.1|4219756_4221190_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_011729585.1|4221385_4222273_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_011729586.1|4222443_4223070_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011729587.1|4223205_4223499_+	DUF1330 domain-containing protein	NA	NA	NA	NA	NA
WP_011729588.1|4223542_4224481_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011729589.1|4224785_4225349_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_011729590.1|4225711_4226689_+	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_011729591.1|4226743_4228018_+	MFS transporter	NA	NA	NA	NA	NA
WP_162139608.1|4228137_4228965_-	alpha/beta hydrolase fold domain-containing protein	NA	M1PGN2	Moumouvirus	28.5	4.6e-25
WP_011729593.1|4229239_4230175_+	acetaldehyde dehydrogenase (acetylating)	NA	G9E526	Ostreococcus_lucimarinus_virus	31.8	1.8e-33
WP_011729594.1|4230171_4231212_+	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	32.8	1.2e-43
WP_011729595.1|4231220_4231472_-	ferredoxin	NA	NA	NA	NA	NA
WP_011729596.1|4231468_4232422_-	oxidoreductase	NA	NA	NA	NA	NA
WP_011729597.1|4232424_4232883_-	cytochrome P450	NA	NA	NA	NA	NA
WP_014877954.1|4234075_4235185_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_011729600.1|4235181_4237407_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	26.0	1.2e-08
WP_011729601.1|4237396_4237825_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_011727856.1|4238188_4239508_-|transposase	IS256 family transposase	transposase	A0A2P1JQX9	Mycobacterium_phage	100.0	2.8e-250
4242595:4242611	attR	GCCCGGTCAGTGCCAGC	NA	NA	NA	NA
>prophage 4
NZ_CP009494	Mycolicibacterium smegmatis MC2 155 chromosome, complete genome	6988269	6214348	6251967	6988269	protease,holin,transposase	Mycobacterium_phage(58.33%)	34	NA	NA
WP_011726768.1|6214348_6215755_+|transposase	IS1380-like element ISMsm3 family transposase	transposase	A0A222ZN33	Mycobacterium_phage	43.9	5.1e-85
WP_162139567.1|6215848_6217021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011726739.1|6217107_6218430_+|transposase	ISL3-like element IS1096 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	100.0	1.1e-254
WP_011726740.1|6218437_6219139_-	plasmid pRiA4b ORF-3 family protein	NA	A0A2H4PDG5	Mycobacterium_phage	99.6	2.0e-138
WP_003897552.1|6219722_6220079_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_011731077.1|6220075_6220951_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_011731078.1|6221173_6222382_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_011731079.1|6222463_6224155_+	adenylate/guanylate cyclase domain-containing protein	NA	A0A1B1IWY2	uncultured_Mediterranean_phage	31.7	2.5e-17
WP_011726739.1|6224212_6225535_+|transposase	ISL3-like element IS1096 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	100.0	1.1e-254
WP_011726740.1|6225542_6226244_-	plasmid pRiA4b ORF-3 family protein	NA	A0A2H4PDG5	Mycobacterium_phage	99.6	2.0e-138
WP_011731080.1|6226406_6229217_-	type I DNA topoisomerase	NA	A0A2K9L5F8	Tupanvirus	31.3	1.4e-97
WP_003897557.1|6229320_6229914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011562175.1|6230009_6230213_-	cold-shock protein	NA	A0A1X9IGI9	Lactococcus_phage	56.2	1.5e-14
WP_003897559.1|6230514_6232845_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_011726739.1|6233116_6234439_+|transposase	ISL3-like element IS1096 family transposase	transposase	A0A2H4PDF8	Mycobacterium_phage	100.0	1.1e-254
WP_011726740.1|6234446_6235148_-	plasmid pRiA4b ORF-3 family protein	NA	A0A2H4PDG5	Mycobacterium_phage	99.6	2.0e-138
WP_011731081.1|6235393_6236410_+	DUF5593 domain-containg protein	NA	NA	NA	NA	NA
WP_011731083.1|6236494_6236821_-	flp pilus-assembly TadE/G-like family protein	NA	NA	NA	NA	NA
WP_003897562.1|6236831_6237098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003897563.1|6237154_6237364_-	DUF4244 domain-containing protein	NA	NA	NA	NA	NA
WP_011731085.1|6237397_6237967_-	type II secretion system protein F	NA	NA	NA	NA	NA
WP_029104598.1|6237963_6238746_-	membrane protein	NA	NA	NA	NA	NA
WP_011731088.1|6238742_6239900_-	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA	NA
WP_042510600.1|6239896_6240985_-	ATPase AAA	NA	NA	NA	NA	NA
WP_011731091.1|6241418_6242300_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_011731092.1|6242738_6243521_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_011731093.1|6243615_6244596_+	2-dehydro-3-deoxygalactonokinase	NA	NA	NA	NA	NA
WP_011731094.1|6244592_6245219_+	2-dehydro-3-deoxy-6-phosphogalactonate aldolase	NA	NA	NA	NA	NA
WP_011731095.1|6245215_6246364_+	galactonate dehydratase	NA	Q6A202	Oenococcus_phage	34.8	5.0e-54
WP_011731096.1|6246369_6247701_+	MFS transporter	NA	NA	NA	NA	NA
WP_014878579.1|6247702_6248458_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014878580.1|6248585_6250541_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	39.2	9.7e-82
WP_162139568.1|6250604_6251321_-|protease	serine protease	protease	NA	NA	NA	NA
WP_003897577.1|6251457_6251967_+|holin	phage holin family protein	holin	NA	NA	NA	NA
