assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000767505.1_ASM76750v1	NZ_CP007240	Streptococcus pyogenes strain 7F7, complete genome	1	751066-751629	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	Type II-B,Type II-A,Type II-C	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	36,36,36	0	0	NA	NA	II-A:II-A:II-A	7,8,8	8	TypeII-B,TypeII-A,TypeII-C	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	NA|214aa|up_8|NZ_CP007240.1_740526_741168_+,NA|99aa|down_1|NZ_CP007240.1_754168_754465_+	NA|452aa|up_9|NZ_CP007240.1_739047_740403_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NZ_CP007240.1_740526_741168_+	NA	NA|377aa|up_7|NZ_CP007240.1_741230_742361_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NZ_CP007240.1_742370_743123_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NZ_CP007240.1_743122_743887_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NZ_CP007240.1_743886_744519_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|NZ_CP007240.1_744997_749104_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_CP007240.1_749103_749973_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_CP007240.1_749969_750311_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_CP007240.1_750300_750963_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|611aa|down_0|NZ_CP007240.1_752149_753982_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|99aa|down_1|NZ_CP007240.1_754168_754465_+	NA	NA|146aa|down_2|NZ_CP007240.1_755667_756105_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_3|NZ_CP007240.1_756234_757254_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_4|NZ_CP007240.1_757460_757886_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_5|NZ_CP007240.1_757912_758404_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_6|NZ_CP007240.1_758420_759230_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_7|NZ_CP007240.1_759226_760054_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_8|NZ_CP007240.1_760189_761839_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_9|NZ_CP007240.1_761842_762631_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
GCF_000767505.1_ASM76750v1	NZ_CP007240	Streptococcus pyogenes strain 7F7, complete genome	2	929906-930007	2	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	NA,NA|262aa|down_6|NZ_CP007240.1_937837_938623_+	NA|83aa|up_9|NZ_CP007240.1_917622_917871_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NZ_CP007240.1_918233_920552_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NZ_CP007240.1_921081_922404_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NZ_CP007240.1_922523_923759_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NZ_CP007240.1_924128_924902_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NZ_CP007240.1_925270_926107_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NZ_CP007240.1_926122_926752_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_CP007240.1_926761_927403_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NZ_CP007240.1_927509_927845_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NZ_CP007240.1_928040_929855_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NZ_CP007240.1_930030_930588_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NZ_CP007240.1_930805_932308_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NZ_CP007240.1_932370_933384_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NZ_CP007240.1_933463_936574_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NZ_CP007240.1_936758_937130_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_CP007240.1_937129_937828_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NZ_CP007240.1_937837_938623_+	NA	NA|205aa|down_7|NZ_CP007240.1_938753_939368_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|63aa|down_8|NZ_CP007240.1_939958_940147_-	cd06603, GH31_GANC_GANAB_alpha, neutral alpha-glucosidase C, neutral alpha-glucosidase AB	NA|263aa|down_9|NZ_CP007240.1_940261_941050_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain
GCF_000767505.1_ASM76750v1	NZ_CP007240	Streptococcus pyogenes strain 7F7, complete genome	3	1505459-1505572	3	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	Orphan	GGGCTCTTTTCTGGAGCTTTTTCGCCTG	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,DEDDh,csa3	NA,NA	NA|250aa|up_9|NZ_CP007240.1_1490898_1491648_-	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional	NA|122aa|up_8|NZ_CP007240.1_1491866_1492232_-	PRK06531, yajC, preprotein translocase subunit YajC; Validated	NA|125aa|up_7|NZ_CP007240.1_1492347_1492722_-	TIGR01295, Pediocin_PA-1_biosynthesis_protein_PedC, bacteriocin transport accessory protein, putative	NA|1166aa|up_6|NZ_CP007240.1_1492836_1496334_-	TIGR02102, alkaline_amylopullulanase, pullulanase, extracellular, Gram-positive	NA|538aa|up_5|NZ_CP007240.1_1496531_1498145_-	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins	NA|378aa|up_4|NZ_CP007240.1_1498273_1499407_-	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|283aa|up_3|NZ_CP007240.1_1499704_1500553_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|441aa|up_2|NZ_CP007240.1_1500892_1502215_+	pfam02821, Staphylokinase, Staphylokinase/Streptokinase family	NA|148aa|up_1|NZ_CP007240.1_1502312_1502756_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|740aa|up_0|NZ_CP007240.1_1502770_1504990_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|161aa|down_0|NZ_CP007240.1_1506509_1506992_+	PRK02551, PRK02551, flavoprotein NrdI; Provisional	NA|273aa|down_1|NZ_CP007240.1_1507385_1508204_-	cd09079, RgfB-like, Streptococcus agalactiae RgfB, part of a putative two component signal transduction system, and related proteins	NA|729aa|down_2|NZ_CP007240.1_1508286_1510473_-	TIGR02003, PTS_system_glucose-specific_IIBC_component, PTS system, IIBC component	NA|251aa|down_3|NZ_CP007240.1_1510830_1511583_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|318aa|down_4|NZ_CP007240.1_1511582_1512536_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|157aa|down_5|NZ_CP007240.1_1512606_1513077_-	pfam11217, DUF3013, Protein of unknown function (DUF3013)	NA|658aa|down_6|NZ_CP007240.1_1513249_1515223_+	PRK06529, PRK06529, amidase; Provisional	NA|586aa|down_7|NZ_CP007240.1_1515407_1517165_+	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism]	NA|189aa|down_8|NZ_CP007240.1_1517197_1517764_+	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|423aa|down_9|NZ_CP007240.1_1517796_1519065_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed
