The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	0	12666	3697138	transposase	Shigella_phage(33.33%)	5	NA	NA
WP_005011899.1|267_462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101557807.1|6541_7703_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	61.3	8.3e-97
WP_005014698.1|9683_11234_+	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	32.9	4.1e-19
WP_017685964.1|11230_11380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101557770.1|11545_12666_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
>prophage 2
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	25450	26962	3697138		Klebsiella_phage(100.0%)	1	NA	NA
WP_005014726.1|25450_26962_-	DUF853 family protein	NA	A0A248XCZ8	Klebsiella_phage	45.9	2.5e-77
>prophage 3
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	45376	49392	3697138	transposase	Planktothrix_phage(50.0%)	4	NA	NA
WP_032967914.1|45376_46228_+	manganese/iron ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	1.5e-10
WP_005014767.1|46224_47076_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_005014769.1|47072_47897_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_005011985.1|48171_49392_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
>prophage 4
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	52575	56091	3697138		Salmonella_phage(50.0%)	2	NA	NA
WP_005014780.1|52575_54669_+	TonB-dependent receptor	NA	A0A1B0VCF0	Salmonella_phage	55.8	2.4e-107
WP_005014781.1|54684_56091_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	28.2	1.5e-20
>prophage 5
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	60979	62437	3697138	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_005014796.1|60979_62437_-|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	30.0	7.5e-39
>prophage 6
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	65713	67300	3697138		Moraxella_phage(100.0%)	1	NA	NA
WP_005014808.1|65713_67300_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.5	2.9e-36
>prophage 7
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	79221	80043	3697138		Bacillus_virus(100.0%)	1	NA	NA
WP_005019742.1|79221_80043_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.9	8.0e-30
>prophage 8
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	83462	84011	3697138		Lactobacillus_phage(100.0%)	1	NA	NA
WP_005014837.1|83462_84011_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.3	1.5e-11
>prophage 9
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	87915	90510	3697138		Klosneuvirus(100.0%)	1	NA	NA
WP_005019754.1|87915_90510_+	DNA mismatch repair protein MutS	NA	A0A1V0SJ67	Klosneuvirus	21.1	5.5e-24
>prophage 10
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	95811	96651	3697138		Rhodococcus_phage(100.0%)	1	NA	NA
WP_100225793.1|95811_96651_+	hypothetical protein	NA	A0A1I9SA48	Rhodococcus_phage	35.1	2.4e-37
>prophage 11
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	106837	108000	3697138	transposase	Shigella_phage(100.0%)	1	NA	NA
WP_101557807.1|106837_108000_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	61.3	8.3e-97
>prophage 12
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	137125	138245	3697138	transposase	Leptospira_phage(100.0%)	1	NA	NA
WP_101557860.1|137125_138245_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.4	3.1e-56
>prophage 13
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	145456	148126	3697138		Anomala_cuprea_entomopoxvirus(50.0%)	3	NA	NA
WP_005014922.1|145456_146215_-	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.7	7.4e-14
WP_005014928.1|146211_147141_-	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_155278157.1|147166_148126_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	43.6	9.6e-67
>prophage 14
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	155333	156554	3697138	transposase	Ralstonia_virus(100.0%)	1	NA	NA
WP_005012861.1|155333_156554_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.6	4.2e-184
>prophage 15
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	167865	168615	3697138		Bacillus_virus(100.0%)	1	NA	NA
WP_005014963.1|167865_168615_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.1	6.2e-29
>prophage 16
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	178328	186886	3697138	tRNA	Salmonella_phage(25.0%)	8	NA	NA
WP_005014985.1|178328_178844_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	3.9e-06
WP_005019785.1|179116_179335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853053.1|179404_179557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814025.1|179522_179771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005014991.1|180049_181405_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	2.1e-83
WP_005014999.1|182892_183525_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_025341183.1|183524_185885_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	2.2e-80
WP_005019797.1|185926_186886_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	2.4e-57
>prophage 17
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	202700	203957	3697138		Phage_21(100.0%)	1	NA	NA
WP_005015031.1|202700_203957_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
>prophage 18
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	208553	214644	3697138		Tupanvirus(33.33%)	3	NA	NA
WP_005015039.1|208553_211304_+	insulinase family protein	NA	A0A2K9LA15	Tupanvirus	28.1	1.5e-19
WP_005019808.1|211472_212618_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	60.8	4.0e-19
WP_005015048.1|212718_214644_-	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	49.7	2.7e-145
>prophage 19
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	252338	255960	3697138	transposase	Leptospira_phage(50.0%)	3	NA	NA
WP_101557744.1|252338_253458_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	42.6	5.8e-55
WP_005015154.1|254018_254597_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_005012861.1|254739_255960_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.6	4.2e-184
>prophage 20
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	260515	261964	3697138		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_101557865.1|260515_261964_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.6	1.0e-51
>prophage 21
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	266917	271578	3697138	transposase	Bacillus_phage(50.0%)	5	NA	NA
WP_005015171.1|266917_267757_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	46.2	1.6e-62
WP_017685922.1|267778_268636_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_005015173.1|268708_269827_-	porin	NA	NA	NA	NA	NA
WP_005015175.1|269813_270428_-	magnesium transporting ATPase P-type 1	NA	NA	NA	NA	NA
WP_101557744.1|270457_271578_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	42.6	5.8e-55
>prophage 22
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	278018	287013	3697138		Bacillus_phage(40.0%)	9	NA	NA
WP_005019849.1|278018_279608_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	46.9	4.3e-64
WP_005015184.1|279607_280153_+	crossover junction endodeoxyribonuclease RuvC	NA	A0A088FT24	Mycobacterium_phage	30.8	3.5e-05
WP_005015187.1|280236_280809_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_005019851.1|280812_281580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015190.1|281611_281947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015191.1|281870_282938_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	24.5	2.1e-06
WP_005015192.1|282934_284755_-	DNA helicase RecQ	NA	A0A1V0SBK0	Catovirus	33.9	8.7e-77
WP_005015193.1|284870_286079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015194.1|286311_287013_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	2.8e-31
>prophage 23
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	291024	302688	3697138	transposase,tRNA	Planktothrix_phage(40.0%)	11	NA	NA
WP_005015199.1|291024_292785_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	52.4	2.2e-170
WP_005015204.1|293904_294720_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_005015207.1|294723_294996_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_005012365.1|295117_296338_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.2e-183
WP_005015209.1|296389_296611_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_005015210.1|296806_297340_-	isochorismatase family protein	NA	NA	NA	NA	NA
WP_005015211.1|297390_299064_-	energy-dependent translational throttle protein EttA	NA	A0A2K9L3Z8	Tupanvirus	27.9	2.9e-42
WP_005015212.1|299163_300045_-	DMT family transporter	NA	NA	NA	NA	NA
WP_005015213.1|300194_300704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015214.1|300721_301717_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	31.6	7.7e-19
WP_005015215.1|301713_302688_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.3	2.9e-18
>prophage 24
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	307528	315116	3697138		Lactobacillus_phage(33.33%)	6	NA	NA
WP_005015224.1|307528_308581_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	2.7e-06
WP_005015226.1|308607_310515_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005015228.1|310735_311896_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	36.0	1.2e-47
WP_005015232.1|312961_313594_-	LysE family translocator	NA	NA	NA	NA	NA
WP_005015233.1|313728_314058_+	DUF454 domain-containing protein	NA	NA	NA	NA	NA
WP_005015236.1|314066_315116_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L339	Tupanvirus	43.1	1.7e-69
>prophage 25
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	322541	326757	3697138		Lactobacillus_phage(50.0%)	3	NA	NA
WP_005015263.1|322541_323924_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	24.5	7.2e-15
WP_026087812.1|323927_324944_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_005015268.1|325368_326757_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	32.7	5.7e-52
>prophage 26
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	329903	332666	3697138		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_005015272.1|329903_332666_-	cation-transporting P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	30.1	3.8e-76
>prophage 27
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	350081	351713	3697138		uncultured_virus(100.0%)	1	NA	NA
WP_005015300.1|350081_351713_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	59.1	4.3e-168
>prophage 28
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	358120	359821	3697138		Orpheovirus(50.0%)	2	NA	NA
WP_005015321.1|358120_358639_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2I2L4Y7	Orpheovirus	32.8	2.0e-10
WP_005019888.1|358648_359821_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	M4QPK3	Synechococcus_phage	41.5	3.4e-34
>prophage 29
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	366916	367687	3697138		Planktothrix_phage(100.0%)	1	NA	NA
WP_005015347.1|366916_367687_+	phosphonate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.5	7.5e-22
>prophage 30
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	373164	373989	3697138		uncultured_Mediterranean_phage(100.0%)	2	NA	NA
WP_005015356.1|373164_373677_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	43.9	2.5e-29
WP_005015357.1|373734_373989_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	2.6e-19
>prophage 31
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	379017	383762	3697138	transposase	Acinetobacter_phage(50.0%)	2	NA	NA
WP_005015370.1|379017_381087_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	28.9	5.4e-06
WP_005011985.1|382541_383762_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
>prophage 32
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	392465	393989	3697138		Mollivirus(100.0%)	1	NA	NA
WP_005015385.1|392465_393989_-	carboxylesterase family protein	NA	A0A0M4JT58	Mollivirus	31.3	1.5e-26
>prophage 33
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	416406	417339	3697138		Tupanvirus(100.0%)	1	NA	NA
WP_100225797.1|416406_417339_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	36.0	6.1e-42
>prophage 34
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	432542	433853	3697138		Bacillus_phage(100.0%)	1	NA	NA
WP_005019920.1|432542_433853_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	26.4	6.2e-08
>prophage 35
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	436881	438267	3697138		Bacillus_phage(100.0%)	1	NA	NA
WP_005015461.1|436881_438267_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.5	1.3e-51
>prophage 36
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	443233	455957	3697138	transposase	Chrysochromulina_ericina_virus(20.0%)	10	NA	NA
WP_005015470.1|443233_445153_-	asparagine synthase (glutamine-hydrolyzing)	NA	A0A0N9QYX6	Chrysochromulina_ericina_virus	27.0	6.9e-24
WP_005015471.1|445167_446292_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_005015472.1|447648_448674_-	SDR family oxidoreductase	NA	E3T4Y8	Cafeteria_roenbergensis_virus	44.9	9.0e-71
WP_005015473.1|448700_449975_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_005015474.1|450074_451178_-	glycosyl transferase family 4 protein 1	NA	NA	NA	NA	NA
WP_005011985.1|451552_452773_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005019922.1|453240_453900_-	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_005015477.1|454025_454457_+	OsmC family protein	NA	NA	NA	NA	NA
WP_005015478.1|454500_455472_+	thymidylate synthase	NA	A0A142IIU2	Enterobacteria_phage	33.4	1.2e-53
WP_005015479.1|455468_455957_+	dihydrofolate reductase	NA	A0A0S2MU93	Bacillus_phage	39.1	1.4e-26
>prophage 37
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	465560	467210	3697138		Planktothrix_phage(100.0%)	1	NA	NA
WP_005015500.1|465560_467210_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.5	4.4e-19
>prophage 38
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	472473	475347	3697138		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_005015512.1|472473_475347_-	aminomethyl-transferring glycine dehydrogenase	NA	M4QFZ1	Prochlorococcus_phage	51.7	6.5e-260
>prophage 39
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	482126	482690	3697138		Pseudomonas_phage(100.0%)	1	NA	NA
WP_005015532.1|482126_482690_-	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	74.1	5.8e-72
>prophage 40
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	489992	492068	3697138	tRNA	Klosneuvirus(100.0%)	1	NA	NA
WP_005015542.1|489992_492068_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	3.8e-28
>prophage 41
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	498125	498809	3697138		Bacillus_phage(100.0%)	1	NA	NA
WP_005015563.1|498125_498809_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.6	1.0e-25
>prophage 42
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	502207	502969	3697138		Bacillus_virus(100.0%)	1	NA	NA
WP_005015573.1|502207_502969_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.1	6.5e-10
>prophage 43
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	509865	510543	3697138		Bacillus_virus(100.0%)	1	NA	NA
WP_005015595.1|509865_510543_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.5	9.5e-29
>prophage 44
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	529269	530139	3697138		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_005015647.1|529269_530139_-	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.7	2.6e-23
>prophage 45
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	553874	554762	3697138		Lactobacillus_phage(100.0%)	1	NA	NA
WP_005015704.1|553874_554762_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	29.7	1.4e-08
>prophage 46
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	558842	635841	3697138	transposase,integrase,tRNA	Ralstonia_virus(21.43%)	55	561643:561702	610224:610794
WP_050597663.1|558842_559568_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_005015711.1|559590_560538_+	prolyl aminopeptidase	NA	NA	NA	NA	NA
WP_005015713.1|560539_560740_+	sulfur carrier protein ThiS	NA	NA	NA	NA	NA
WP_101557770.1|561074_562194_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
561643:561702	attL	GACCGAGCGCGTGGTTCGCCCAGCGGCAATCGCGCCGAATCAGAGTTGGTCAATGGACTT	NA	NA	NA	NA
WP_005015714.1|562515_563232_-	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_005015715.1|563228_564122_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005011985.1|564285_565506_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005015716.1|565658_566741_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.1	1.5e-31
WP_005015717.1|568420_569404_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_005015719.1|569466_570879_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005015721.1|570996_571839_+	cytochrome assembly protein	NA	NA	NA	NA	NA
WP_005015723.1|571905_572115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015735.1|572116_572725_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	46.8	1.0e-05
WP_005015738.1|572740_573361_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005015741.1|573426_574134_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.3	1.2e-13
WP_005015743.1|574138_574861_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.6	1.9e-11
WP_005020013.1|575212_576433_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	5.5e-184
WP_025341216.1|577157_578009_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_005015753.1|578060_579314_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015755.1|579490_580279_-	putative hydro-lyase	NA	NA	NA	NA	NA
WP_005015757.1|580398_581313_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005015758.1|581445_583338_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.9	4.6e-121
WP_017685928.1|583523_584903_+	uracil-xanthine permease	NA	H9YQ34	environmental_Halophage	50.7	4.1e-26
WP_076879504.1|585347_585644_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_005015774.1|589444_590047_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_005015778.1|590180_590639_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_005015780.1|590640_591240_-	iron transport sensor protein	NA	NA	NA	NA	NA
WP_005015786.1|592091_592946_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_005015790.1|593065_593653_+	HutD family protein	NA	NA	NA	NA	NA
WP_005015791.1|593649_595029_+	formimidoylglutamate deiminase	NA	NA	NA	NA	NA
WP_153566140.1|595533_595680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100225804.1|603339_604689_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	G9E4Q1	Emiliania_huxleyi_virus	32.3	2.9e-45
WP_005015796.1|604702_605554_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	40.4	4.4e-47
WP_005015799.1|605565_606831_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_005015801.1|606892_608797_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_005015804.1|610772_611627_-	hypothetical protein	NA	NA	NA	NA	NA
610224:610794	attR	GACCGAGCGCGTGGTTCGCCCAGCGGCAATCGCGCCGAATCAGAGTTGGTCAATGGACTTTGTGGCCGACGGCCTAGCCTATGGCCGCCGATTCCGCTGTTTGACTATCGTCGATGACTACACTCGCGAATGCCTGGCCATCGAGGTCGATACGTCGTTGCCGGGACTGCGTGTTGCCATGGTGCTGCAACGGCTGGCGGAGATGCGTGGCCTGCCGCGATCTATTACCGTGGACAACGGGCCAGAGTTCGCCGGAAGAGCCTTGGACGCCTGGGCCTACCAAGCAGGCGTAAAGCTGTCGTTTATTCGGCCGGGTAAGCCGGTGGAGAACGCTTATATCGAAAGTTTCAACGGCAAGTTCCGCGACGAATGCCTTAACGAGCACTGGTTCTTGTCCCTGCGACAGGCTAAAAGCTTGATCGAAAACTGGCGAGTCGAGTACAACACCGATCGGCCTCACAGCGCGCTCGGATATTTAACGCCGGCGCAATTCGTGCAGGCTCATCAGAAAGAAGGTCTTTTACCCCTGGGCTCTATGTCGGTGCCGTACTAAATCTGGGGGCAGGTCAGC	NA	NA	NA	NA
WP_005015806.1|611619_612414_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005015810.1|612629_613580_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005020039.1|614182_614980_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015813.1|615019_615673_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_005015815.1|615653_616718_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	37.3	6.5e-32
WP_005015817.1|616881_619107_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_005015818.1|619352_621197_-|tRNA	tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD	tRNA	NA	NA	NA	NA
WP_005015820.1|621313_622186_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005015825.1|622232_623933_-	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	27.5	1.0e-31
WP_005015826.1|623995_625195_+	amidohydrolase	NA	NA	NA	NA	NA
WP_005015829.1|625205_626084_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005015832.1|626190_627228_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_025341225.1|627308_627713_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_005015836.1|627724_629182_+	magnesium transporter	NA	NA	NA	NA	NA
WP_005015841.1|629824_630421_-	cation transport-associated protein	NA	NA	NA	NA	NA
WP_005015844.1|630581_631040_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005015847.1|631817_632789_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015849.1|632910_633330_+	DUF1993 domain-containing protein	NA	NA	NA	NA	NA
WP_005016668.1|634620_635841_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.1	1.0e-182
>prophage 47
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	648234	653133	3697138	transposase,tRNA	Powai_lake_megavirus(33.33%)	3	NA	NA
WP_005015883.1|648234_648660_-	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	42.9	2.4e-22
WP_005015887.1|648979_651859_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	1.1e-137
WP_005015889.1|651912_653133_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.1	1.0e-182
>prophage 48
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	666394	667515	3697138	transposase	Leptospira_phage(100.0%)	1	NA	NA
WP_101557770.1|666394_667515_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
>prophage 49
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	684007	686568	3697138		Bacillus_virus(50.0%)	2	NA	NA
WP_050427738.1|684007_686020_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	35.1	9.6e-93
WP_005020063.1|686241_686568_+	thioredoxin TrxA	NA	A0A1J0GW78	Streptomyces_phage	44.1	9.6e-19
>prophage 50
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	698527	699199	3697138		Synechococcus_phage(100.0%)	1	NA	NA
WP_005015979.1|698527_699199_+	HAD family hydrolase	NA	A0A1D8KNV9	Synechococcus_phage	28.3	1.7e-06
>prophage 51
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	707310	718618	3697138	transposase	uncultured_virus(25.0%)	9	NA	NA
WP_005015994.1|707310_710031_-	DNA polymerase I	NA	A0A218MKQ4	uncultured_virus	29.9	6.5e-68
WP_025341235.1|710083_710713_+	TIGR00730 family Rossman fold protein	NA	A0A1D8KU27	Synechococcus_phage	32.8	3.0e-16
WP_005015996.1|710798_711272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005016002.1|711279_711900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005016004.1|713143_713518_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_005016008.1|713606_714860_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	5.1e-28
WP_005016011.1|714856_715714_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_005016013.1|715853_716849_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005011985.1|717397_718618_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
>prophage 52
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	723361	724582	3697138	transposase	Ralstonia_virus(100.0%)	1	NA	NA
WP_005016023.1|723361_724582_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.1	1.0e-182
>prophage 53
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	729134	741648	3697138	transposase,tRNA	Staphylococcus_phage(25.0%)	10	NA	NA
WP_005016033.1|729134_731792_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	38.7	7.5e-170
WP_005016043.1|732479_733529_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_005016044.1|733552_734812_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	46.2	1.9e-94
WP_005016045.1|734818_735208_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005016046.1|735359_735644_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_005016047.1|735640_736030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005016049.1|736042_737206_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_005016057.1|737232_738993_-	ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	28.5	3.5e-14
WP_005016059.1|738989_740291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101557886.1|740528_741648_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
>prophage 54
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	755327	755870	3697138		Clostridium_phage(100.0%)	1	NA	NA
WP_005016070.1|755327_755870_-	3'-5' exonuclease	NA	A0A0A7RWA3	Clostridium_phage	29.7	7.2e-11
>prophage 55
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	805913	807200	3697138		Bacillus_phage(100.0%)	1	NA	NA
WP_005016176.1|805913_807200_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	36.4	1.9e-14
>prophage 56
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	826334	827555	3697138	transposase	Ralstonia_virus(100.0%)	1	NA	NA
WP_005011985.1|826334_827555_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
>prophage 57
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	847434	849419	3697138		Planktothrix_phage(100.0%)	2	NA	NA
WP_005016280.1|847434_848430_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	31.9	1.7e-18
WP_005016282.1|848426_849419_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	26.5	2.8e-13
>prophage 58
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	873731	874529	3697138		Planktothrix_phage(100.0%)	1	NA	NA
WP_005020175.1|873731_874529_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.6	6.0e-06
>prophage 59
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	889406	893833	3697138		Bacillus_virus(50.0%)	3	NA	NA
WP_005020184.1|889406_890252_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.4	1.5e-26
WP_005016386.1|891625_891841_-	molybdenum-pterin-binding protein 3	NA	NA	NA	NA	NA
WP_005016388.1|893104_893833_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.0	7.4e-11
>prophage 60
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	912855	914145	3697138		Pandoravirus(100.0%)	1	NA	NA
WP_005016436.1|912855_914145_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	27.4	4.6e-16
>prophage 61
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	917683	920820	3697138		Cedratvirus(33.33%)	3	NA	NA
WP_005016441.1|917683_918472_+	ABC transporter ATP-binding protein	NA	A0A1M7XV31	Cedratvirus	25.6	2.7e-14
WP_005016442.1|918468_919179_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.3	1.1e-11
WP_005016444.1|919251_920820_-	tetratricopeptide repeat protein	NA	D6PFH9	uncultured_phage	24.5	8.2e-15
>prophage 62
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	928169	935299	3697138	tRNA	Pandoravirus(50.0%)	5	NA	NA
WP_005016455.1|928169_929300_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	39.9	3.0e-35
WP_005016456.1|929307_929940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005016457.1|929954_930791_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	A0A291ATS8	Pandoravirus	36.5	4.5e-20
WP_005016459.1|932153_934121_-	MacB family efflux pump subunit	NA	G9BWD6	Planktothrix_phage	42.3	1.2e-36
WP_005016461.1|934117_935299_-	efflux RND transporter periplasmic adaptor subunit	NA	A0A140XAI1	Dickeya_phage	69.6	4.9e-12
>prophage 63
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	939887	940742	3697138		Synechococcus_phage(100.0%)	1	NA	NA
WP_005016475.1|939887_940742_+	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	41.4	1.7e-11
>prophage 64
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	947737	959915	3697138	transposase,tRNA	uncultured_Caudovirales_phage(20.0%)	11	NA	NA
WP_005016489.1|947737_949114_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.5	2.0e-17
WP_005016496.1|949189_949822_-	membrane protein	NA	NA	NA	NA	NA
WP_005016498.1|949941_951795_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	34.5	1.3e-83
WP_025341252.1|951797_952748_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_005016502.1|952800_953850_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	1.0e-69
WP_005016507.1|954104_954800_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_005016510.1|954796_955495_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_005016511.1|955494_956853_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.3	4.4e-25
WP_005016512.1|956849_957323_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_005016516.1|957395_958796_-	DUF839 domain-containing protein	NA	NA	NA	NA	NA
WP_101557770.1|958795_959915_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
>prophage 65
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	980973	981507	3697138		Synechococcus_phage(100.0%)	1	NA	NA
WP_005016562.1|980973_981507_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.6	7.5e-13
>prophage 66
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	986663	987806	3697138		Streptococcus_phage(100.0%)	1	NA	NA
WP_005016569.1|986663_987806_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	38.0	3.2e-37
>prophage 67
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1000366	1001487	3697138	transposase	Leptospira_phage(100.0%)	1	NA	NA
WP_101557831.1|1000366_1001487_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.2e-55
>prophage 68
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1020256	1025711	3697138		Escherichia_phage(25.0%)	5	NA	NA
WP_005016630.1|1020256_1020970_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	41.4	1.6e-47
WP_005016651.1|1020982_1021525_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	45.8	1.1e-27
WP_005016652.1|1021630_1022539_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	25.7	4.4e-05
WP_005016653.1|1022630_1024487_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_076879512.1|1024670_1025711_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.2	4.3e-20
>prophage 69
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1034334	1042499	3697138	transposase	Ralstonia_virus(33.33%)	8	NA	NA
WP_005016668.1|1034334_1035555_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.1	1.0e-182
WP_032826408.1|1035872_1037804_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_101557770.1|1038276_1039396_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
WP_076879513.1|1039399_1039648_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_005016690.1|1039665_1040232_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_005016691.1|1040234_1040561_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_005016692.1|1040601_1041411_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_005016693.1|1041416_1042499_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
>prophage 70
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1056020	1058329	3697138		Caulobacter_phage(50.0%)	2	NA	NA
WP_005016699.1|1056020_1056854_+	metallophosphoesterase	NA	A0A067XQN2	Caulobacter_phage	28.3	4.8e-22
WP_005020211.1|1056850_1058329_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	63.6	1.5e-159
>prophage 71
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1072525	1073659	3697138		Streptococcus_phage(100.0%)	1	NA	NA
WP_005016716.1|1072525_1073659_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.5	3.4e-63
>prophage 72
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1078382	1086257	3697138	transposase	Ralstonia_virus(33.33%)	8	NA	NA
WP_005011985.1|1078382_1079603_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_153566143.1|1079664_1079808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005016732.1|1080031_1080925_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005016734.1|1081026_1081824_+	pH-regulated membrane protein	NA	A0A1D7XFL1	Escherichia_phage	29.5	8.6e-21
WP_005016735.1|1081871_1083284_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_005016737.1|1083287_1083986_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005016739.1|1084059_1084809_-	HesA/MoeB/ThiF family protein	NA	NA	NA	NA	NA
WP_005016740.1|1084805_1086257_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	24.1	1.7e-19
>prophage 73
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1089304	1089562	3697138		Rhizobium_phage(100.0%)	1	NA	NA
WP_005016747.1|1089304_1089562_+	glutaredoxin 3	NA	V9QKN6	Rhizobium_phage	47.4	2.5e-14
>prophage 74
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1106124	1107345	3697138	transposase	Ralstonia_virus(100.0%)	1	NA	NA
WP_005011985.1|1106124_1107345_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
>prophage 75
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1123395	1124958	3697138	tRNA	Prochlorococcus_phage(50.0%)	2	NA	NA
WP_005016811.1|1123395_1124343_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	42.2	1.4e-09
WP_005016812.1|1124445_1124958_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	45.1	1.0e-22
>prophage 76
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1134218	1135235	3697138		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_005016831.1|1134218_1135235_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.5	2.0e-75
>prophage 77
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1146727	1152273	3697138		Bacillus_phage(33.33%)	4	NA	NA
WP_005016855.1|1146727_1148650_+	branched-chain amino acid ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	25.1	2.6e-07
WP_005016861.1|1148668_1149391_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.1	1.4e-14
WP_005016863.1|1149438_1150137_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_017685764.1|1150302_1152273_+	AMP-binding protein	NA	A0A1V0SBX8	Catovirus	22.5	2.1e-36
>prophage 79
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1212413	1216836	3697138		Stx2-converting_phage(50.0%)	5	NA	NA
WP_025341266.1|1212413_1213685_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.8	2.6e-67
WP_005017017.1|1213821_1214469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005017018.1|1214500_1215073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005017020.1|1215095_1216022_-	MCE family protein	NA	NA	NA	NA	NA
WP_005017022.1|1216008_1216836_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.6	4.7e-22
>prophage 80
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1222220	1225670	3697138		Enterobacteria_phage(50.0%)	4	NA	NA
WP_005017033.1|1222220_1222793_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	46.9	9.8e-35
WP_005017035.1|1222789_1223671_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	59.2	1.3e-97
WP_005017039.1|1223667_1224567_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	29.7	3.5e-18
WP_005017042.1|1224563_1225670_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.2	3.0e-80
>prophage 81
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1232273	1238231	3697138	tRNA	Catovirus(66.67%)	4	NA	NA
WP_005017062.1|1232273_1234064_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	24.5	5.5e-07
WP_100225815.1|1234105_1234747_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	29.0	1.5e-12
WP_005017066.1|1234743_1235058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005017068.1|1236608_1238231_-	dehydrogenase	NA	A0A1V0S9J5	Catovirus	29.6	5.4e-46
>prophage 82
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1246369	1247443	3697138		Planktothrix_phage(100.0%)	1	NA	NA
WP_005017086.1|1246369_1247443_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.1	2.6e-28
>prophage 83
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1256836	1257919	3697138		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
WP_005017108.1|1256836_1257919_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	33.2	1.1e-45
>prophage 84
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1265236	1269223	3697138	transposase	Acanthamoeba_polyphaga_mimivirus(50.0%)	2	NA	NA
WP_005017120.1|1265236_1267873_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	26.3	8.0e-23
WP_005017122.1|1268002_1269223_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.1	1.1e-181
>prophage 85
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1279749	1291303	3697138	transposase	Staphylococcus_phage(40.0%)	9	NA	NA
WP_005011985.1|1279749_1280970_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005017154.1|1281365_1282034_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	40.7	2.3e-35
WP_050557343.1|1283426_1283924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017685324.1|1283965_1284196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005020262.1|1284745_1287199_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.6	1.7e-112
WP_017685326.1|1287278_1288394_-	DNA polymerase III subunit beta	NA	R9TRR6	Rhizobium_phage	29.7	2.1e-41
WP_005017166.1|1290391_1290526_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_005017168.1|1290647_1291019_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_005017170.1|1291015_1291303_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	1.8e-13
>prophage 86
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1297344	1299326	3697138		Planktothrix_phage(100.0%)	2	NA	NA
WP_026087814.1|1297344_1298355_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	28.7	2.4e-15
WP_005017185.1|1298354_1299326_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.6	6.0e-16
>prophage 87
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1317337	1317529	3697138		Lactococcus_phage(100.0%)	1	NA	NA
WP_005017217.1|1317337_1317529_+	cold shock domain-containing protein	NA	Q9AZD3	Lactococcus_phage	65.5	1.4e-14
>prophage 88
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1321464	1337464	3697138		Natrialba_phage(16.67%)	11	NA	NA
WP_005017224.1|1321464_1322259_+	ParA family protein	NA	Q8JL10	Natrialba_phage	33.7	1.6e-19
WP_005017225.1|1322343_1323261_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	35.4	1.2e-13
WP_005017228.1|1323253_1323661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005017230.1|1324115_1325306_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.9	8.9e-14
WP_005017233.1|1325602_1325983_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_005020265.1|1325991_1326525_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	31.2	6.4e-12
WP_005017241.1|1327016_1327715_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_005017243.1|1327959_1328484_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_005017245.1|1328568_1328949_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_005017247.1|1329110_1333223_+	DNA-directed RNA polymerase subunit beta	NA	A0A146JCU1	Tokyovirus	30.5	9.6e-23
WP_005017250.1|1333222_1337464_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.9	1.6e-68
>prophage 89
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1346001	1349371	3697138		Streptococcus_phage(50.0%)	2	NA	NA
WP_005017269.1|1346001_1348104_+	elongation factor G	NA	A0A1S5SF82	Streptococcus_phage	26.1	6.6e-60
WP_005017271.1|1348180_1349371_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.9	8.9e-14
>prophage 90
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1363325	1364153	3697138		Pandoravirus(100.0%)	1	NA	NA
WP_005017310.1|1363325_1364153_+	aspartyl/asparaginyl beta-hydroxylase domain-containing protein	NA	S4VR59	Pandoravirus	37.7	7.8e-25
>prophage 91
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1392941	1402069	3697138	transposase	uncultured_Mediterranean_phage(25.0%)	5	NA	NA
WP_005020279.1|1392941_1395800_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	54.4	3.9e-297
WP_005017404.1|1395975_1397160_+	MFS transporter	NA	NA	NA	NA	NA
WP_005017406.1|1397391_1397904_+	single-stranded DNA-binding protein	NA	F8TUL2	EBPR_podovirus	48.9	2.0e-39
WP_101653709.1|1399839_1400400_+|transposase	transposase	transposase	S5WIU1	Leptospira_phage	49.0	1.4e-38
WP_005017410.1|1400413_1402069_-	asparagine synthase (glutamine-hydrolyzing)	NA	A0A1V0SHV8	Klosneuvirus	28.5	2.5e-22
>prophage 92
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1415739	1420738	3697138		Klosneuvirus(50.0%)	3	NA	NA
WP_005017437.1|1415739_1416930_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.5	5.4e-19
WP_005017439.1|1416986_1417232_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_005017441.1|1419130_1420738_-	methylcrotonyl-CoA carboxylase subunit beta	NA	A0A1B2ITV7	Pike_perch_iridovirus	73.6	2.1e-21
>prophage 93
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1457829	1464519	3697138		Tupanvirus(33.33%)	5	NA	NA
WP_005017529.1|1457829_1459437_-	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.2	1.2e-13
WP_005017532.1|1459462_1460092_-	LysE family transporter	NA	NA	NA	NA	NA
WP_025341289.1|1460122_1461418_-	DEAD/DEAH box helicase	NA	A0A1V0SBR7	Catovirus	29.0	2.9e-42
WP_005017538.1|1461684_1462290_+	LemA family protein	NA	NA	NA	NA	NA
WP_005017543.1|1463160_1464519_-	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PFW5	Moraxella_phage	37.0	6.5e-53
>prophage 94
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1473806	1475787	3697138		uncultured_Mediterranean_phage(100.0%)	2	NA	NA
WP_005017564.1|1473806_1474937_+	PDZ domain-containing protein	NA	A0A1B1IRD3	uncultured_Mediterranean_phage	37.2	3.0e-11
WP_005017566.1|1475001_1475787_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	34.4	5.0e-29
>prophage 95
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1486007	1490578	3697138		Brazilian_cedratvirus(50.0%)	6	NA	NA
WP_005017608.1|1486007_1486817_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	31.8	2.8e-19
WP_005017611.1|1486953_1487580_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005017613.1|1487605_1488397_-	VacJ family lipoprotein	NA	NA	NA	NA	NA
WP_005017615.1|1488461_1488950_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA	NA
WP_005017617.1|1488962_1489745_-	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA	NA
WP_005017621.1|1489741_1490578_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	3.7e-22
>prophage 96
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1499208	1507045	3697138	transposase	Ralstonia_virus(50.0%)	8	NA	NA
WP_005011985.1|1499208_1500429_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005017628.1|1500544_1501288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005017629.1|1501457_1502564_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	28.1	1.4e-32
WP_005017630.1|1502574_1503414_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
WP_005017631.1|1503471_1504161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005017632.1|1504257_1504710_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_005011985.1|1504713_1505934_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_025341292.1|1506121_1507045_+	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	38.5	2.1e-39
>prophage 97
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1514886	1516503	3697138		Flavobacterium_phage(100.0%)	1	NA	NA
WP_005017651.1|1514886_1516503_+	cytochrome c oxidase subunit I	NA	R9VX24	Flavobacterium_phage	38.2	1.5e-08
>prophage 98
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1523701	1531434	3697138		Chrysochromulina_ericina_virus(33.33%)	6	NA	NA
WP_005017671.1|1523701_1525075_+	UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase	NA	A0A0N7G7I9	Chrysochromulina_ericina_virus	35.1	6.7e-29
WP_080601017.1|1525173_1526466_+	MFS transporter	NA	NA	NA	NA	NA
WP_005017677.1|1526557_1527880_+	UDP-glucose/GDP-mannose dehydrogenase family protein	NA	A0A127AXI2	Bacillus_phage	37.8	1.3e-74
WP_017685355.1|1527876_1528932_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_005017681.1|1528932_1529454_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005017701.1|1529601_1531434_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.4	5.0e-157
>prophage 99
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1547800	1549021	3697138	transposase	Ralstonia_virus(100.0%)	1	NA	NA
WP_005011985.1|1547800_1549021_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
>prophage 100
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1560169	1561777	3697138		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
WP_005020340.1|1560169_1561777_-	acetolactate synthase large subunit	NA	G9E4W7	Ostreococcus_lucimarinus_virus	27.1	4.6e-05
>prophage 101
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1566508	1568206	3697138		Staphylococcus_phage(100.0%)	1	NA	NA
WP_155278159.1|1566508_1568206_+	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	26.3	4.4e-14
>prophage 102
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1582163	1583384	3697138	transposase	Ralstonia_virus(100.0%)	1	NA	NA
WP_005011985.1|1582163_1583384_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
>prophage 103
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1586929	1590036	3697138	transposase	Ralstonia_virus(50.0%)	4	NA	NA
WP_005020354.1|1586929_1588150_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.1	3.0e-182
WP_005017867.1|1588112_1588358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005017869.1|1588459_1588990_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005017870.1|1588992_1590036_-	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	51.6	4.9e-16
>prophage 104
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1595643	1596429	3697138		Staphylococcus_phage(100.0%)	1	NA	NA
WP_005017894.1|1595643_1596429_-	heme ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.9	2.8e-08
>prophage 105
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1621173	1625172	3697138		Acinetobacter_phage(75.0%)	4	NA	NA
WP_005017953.1|1621173_1621962_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.4	4.2e-68
WP_005017955.1|1621958_1622990_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.9	1.8e-71
WP_005017958.1|1623006_1623570_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	61.5	6.2e-66
WP_005017960.1|1623651_1625172_-	anthranilate synthase component I	NA	S4VNU7	Pandoravirus	32.1	6.2e-44
>prophage 106
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1630640	1632583	3697138	tRNA	Streptococcus_phage(50.0%)	2	NA	NA
WP_005017975.1|1630640_1631594_+	D-2-hydroxyacid dehydrogenase family protein	NA	M1NSB9	Streptococcus_phage	29.3	1.1e-14
WP_005017976.1|1631632_1632583_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	67.2	1.8e-94
>prophage 107
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1636792	1638286	3697138		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_005017985.1|1636792_1638286_+	DUF1254 domain-containing protein	NA	M1I2Z8	Paramecium_bursaria_Chlorella_virus	29.9	2.4e-40
>prophage 108
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1651211	1657235	3697138		Planktothrix_phage(66.67%)	4	NA	NA
WP_005018012.1|1651211_1653272_+	AAA family ATPase	NA	A7KV33	Bacillus_phage	36.8	1.7e-100
WP_005018017.1|1654342_1655248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005018019.1|1655250_1656261_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.5	2.7e-19
WP_005018021.1|1656257_1657235_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.3	1.3e-15
>prophage 109
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1686959	1687742	3697138		Streptococcus_phage(100.0%)	1	NA	NA
WP_005018082.1|1686959_1687742_+	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	28.6	1.4e-20
>prophage 110
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1704970	1709366	3697138		Caulobacter_phage(25.0%)	5	NA	NA
WP_025341315.1|1704970_1705573_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.2	3.7e-16
WP_005018123.1|1706076_1707009_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_005018125.1|1707005_1707563_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	45.1	9.0e-25
WP_005018127.1|1707579_1708497_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	2.1e-15
WP_005018129.1|1708493_1709366_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	40.0	1.3e-09
>prophage 111
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1717270	1719939	3697138		Staphylococcus_phage(50.0%)	4	NA	NA
WP_005018145.1|1717270_1718056_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	5.0e-21
WP_005018148.1|1718100_1718709_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_005018150.1|1718705_1719329_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_005018153.1|1719333_1719939_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	27.4	1.0e-10
>prophage 112
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1728176	1732185	3697138		Bacillus_phage(66.67%)	3	NA	NA
WP_005018166.1|1728176_1729919_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	21.1	2.1e-11
WP_032826421.1|1729915_1731571_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	25.0	4.0e-20
WP_005018178.1|1731636_1732185_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	2.4e-30
>prophage 113
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1746189	1749580	3697138		Catovirus(50.0%)	2	NA	NA
WP_005018215.1|1746189_1747389_-	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	42.8	2.7e-90
WP_005018221.1|1748881_1749580_-	phosphate regulon transcriptional regulatory protein PhoB	NA	W8CYM9	Bacillus_phage	37.6	1.0e-33
>prophage 114
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1755154	1755883	3697138		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_005020393.1|1755154_1755883_+	ABC transporter ATP-binding protein	NA	M1H3A1	Paramecium_bursaria_Chlorella_virus	28.9	3.2e-06
>prophage 115
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1761509	1777823	3697138		uncultured_Mediterranean_phage(33.33%)	13	NA	NA
WP_005018260.1|1761509_1762661_+	DegT/DnrJ/EryC1/StrS aminotransferase family protein	NA	A0A2K9L470	Tupanvirus	41.8	1.7e-81
WP_005018261.1|1762746_1763388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005018262.1|1763384_1764938_+	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	M4QMK7	Micromonas_pusilla_virus	32.2	4.6e-34
WP_005018263.1|1766349_1767213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005018272.1|1767247_1767736_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	39.2	8.4e-19
WP_005018274.1|1767748_1769074_-	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_005018276.1|1769078_1769759_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.7	1.0e-14
WP_005020394.1|1769830_1770673_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_005018280.1|1770669_1771467_-	thiazole synthase	NA	NA	NA	NA	NA
WP_005018281.1|1771573_1772446_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_110097756.1|1772494_1772800_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_025341318.1|1772681_1773719_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	35.9	4.7e-11
WP_005020395.1|1774052_1777823_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	1.9e-09
>prophage 116
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1786330	1791465	3697138		Planktothrix_phage(66.67%)	5	NA	NA
WP_005018298.1|1786330_1787002_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	2.3e-27
WP_005018300.1|1787256_1788273_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.5	1.9e-73
WP_005018302.1|1788379_1789570_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_005018304.1|1789571_1790672_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_005018305.1|1790724_1791465_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	7.5e-35
>prophage 117
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1822219	1823703	3697138		Brazilian_cedratvirus(50.0%)	2	NA	NA
WP_005018389.1|1822219_1823005_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	26.2	1.6e-11
WP_005018391.1|1822998_1823703_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.5	4.0e-14
>prophage 118
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1827985	1828780	3697138		Bacillus_phage(100.0%)	1	NA	NA
WP_005018400.1|1827985_1828780_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	34.8	1.4e-18
>prophage 119
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1834148	1839801	3697138	transposase	Staphylococcus_phage(50.0%)	5	NA	NA
WP_005018423.1|1834148_1835801_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	29.0	1.1e-46
WP_005018425.1|1835800_1836229_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_005018432.1|1836250_1836655_+	RidA family protein	NA	NA	NA	NA	NA
WP_005018433.1|1836651_1838328_-	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_005011985.1|1838580_1839801_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
>prophage 120
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1851266	1853147	3697138		Lactococcus_phage(100.0%)	1	NA	NA
WP_005018471.1|1851266_1853147_-	RNB domain-containing ribonuclease	NA	Q0GXV6	Lactococcus_phage	31.5	6.4e-06
>prophage 121
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1864956	1872065	3697138		Pseudomonas_phage(66.67%)	4	NA	NA
WP_005018508.1|1864956_1866393_+	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	26.7	7.7e-28
WP_005018511.1|1866461_1867016_-	YggT family protein	NA	NA	NA	NA	NA
WP_005018513.1|1867919_1869116_-	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.3	6.6e-33
WP_005018514.1|1869137_1872065_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	2.8e-170
>prophage 122
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1883510	1884961	3697138		Staphylococcus_phage(50.0%)	2	NA	NA
WP_005018542.1|1883510_1884215_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.9	2.5e-11
WP_005018544.1|1884211_1884961_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	26.9	8.4e-10
>prophage 123
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1904966	1916793	3697138	tRNA	Staphylococcus_phage(40.0%)	12	NA	NA
WP_005018588.1|1904966_1905338_+	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	57.8	4.3e-31
WP_155278154.1|1905294_1905504_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005018602.1|1906437_1907565_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_005018612.1|1907573_1908989_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A8ATH6	Listeria_phage	42.7	6.7e-16
WP_005020410.1|1909268_1910498_+|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_005018614.1|1910536_1911193_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_005018615.1|1911396_1912647_+	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.2	2.8e-98
WP_005018616.1|1912807_1913293_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_005018617.1|1913297_1914260_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005018618.1|1914259_1914820_-	isochorismatase family protein	NA	NA	NA	NA	NA
WP_025341325.1|1915014_1916130_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	31.9	1.7e-38
WP_005018620.1|1916151_1916793_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	36.1	7.2e-26
>prophage 124
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1945594	1947007	3697138		Bacillus_phage(100.0%)	1	NA	NA
WP_005018648.1|1945594_1947007_-	transglycosylase SLT domain-containing protein	NA	A0A223LD43	Bacillus_phage	29.3	2.1e-06
>prophage 125
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1950516	1951737	3697138	transposase	Ralstonia_virus(100.0%)	1	NA	NA
WP_005012861.1|1950516_1951737_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.6	4.2e-184
>prophage 126
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1954746	1960957	3697138	transposase	Bradyrhizobium_phage(33.33%)	3	NA	NA
WP_005018655.1|1954746_1955481_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	42.4	2.6e-40
WP_005011985.1|1955649_1956870_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005020418.1|1958233_1960957_+	ribosome-associated ATPase/putative transporter RbbA	NA	A0A2H4PQG7	Staphylococcus_phage	29.2	6.6e-20
>prophage 127
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1964360	1969142	3697138		Cronobacter_phage(50.0%)	4	NA	NA
WP_005018673.1|1964360_1965407_+	glycosyltransferase family 2 protein	NA	F1C5B0	Cronobacter_phage	39.5	1.4e-58
WP_005018676.1|1965403_1966993_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_005018678.1|1966928_1967438_-	GtrA family protein	NA	NA	NA	NA	NA
WP_005018681.1|1968245_1969142_-	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	33.1	6.5e-09
>prophage 128
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1974468	1976583	3697138		Streptococcus_phage(100.0%)	1	NA	NA
WP_005018697.1|1974468_1976583_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.1	6.0e-61
>prophage 129
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1984307	1986038	3697138	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_005018720.1|1984307_1986038_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	28.6	1.2e-11
>prophage 130
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1991121	1992342	3697138	transposase	Ralstonia_virus(100.0%)	1	NA	NA
WP_005011985.1|1991121_1992342_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
>prophage 131
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	1995944	1997165	3697138	transposase	Ralstonia_virus(100.0%)	1	NA	NA
WP_005011985.1|1995944_1997165_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
>prophage 132
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2016231	2018040	3697138		Streptococcus_phage(100.0%)	1	NA	NA
WP_005011919.1|2016231_2018040_-	ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	29.5	2.5e-44
>prophage 133
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2042751	2046780	3697138	transposase	Ralstonia_virus(50.0%)	3	NA	NA
WP_005011985.1|2042751_2043972_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005011987.1|2044250_2045408_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_026087934.1|2045472_2046780_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
>prophage 134
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2050676	2052947	3697138		Vibrio_phage(100.0%)	1	NA	NA
WP_005011996.1|2050676_2052947_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.8	1.4e-36
>prophage 135
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2094631	2098661	3697138	transposase	Bacillus_phage(50.0%)	3	NA	NA
WP_005012063.1|2094631_2095366_-	two-component system response regulator OmpR	NA	W8CYM9	Bacillus_phage	36.3	1.3e-34
WP_005012067.1|2095501_2096452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005018858.1|2097806_2098661_+	uracil-DNA glycosylase	NA	L7TNG6	Rhizobium_phage	24.0	1.1e-05
>prophage 136
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2104920	2107780	3697138		Ralstonia_phage(50.0%)	2	NA	NA
WP_005012075.1|2104920_2107005_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	44.2	1.8e-147
WP_005012076.1|2107009_2107780_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	6.8e-31
>prophage 137
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2111692	2112370	3697138		Bacillus_virus(100.0%)	1	NA	NA
WP_005012090.1|2111692_2112370_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.9	6.9e-11
>prophage 138
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2115991	2118564	3697138		Brazilian_cedratvirus(50.0%)	2	NA	NA
WP_005012097.1|2115991_2117827_+	branched-chain amino acid ABC transporter ATP-binding protein/permease	NA	A0A2R8FG22	Brazilian_cedratvirus	29.0	1.8e-13
WP_005012100.1|2117823_2118564_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	26.8	1.4e-09
>prophage 139
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2130440	2131616	3697138		Agrobacterium_phage(100.0%)	1	NA	NA
WP_005012129.1|2130440_2131616_+	nicotinate phosphoribosyltransferase	NA	A0A2L0UZQ6	Agrobacterium_phage	32.5	4.2e-48
>prophage 140
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2150693	2151476	3697138		Rhizobium_phage(100.0%)	1	NA	NA
WP_005012163.1|2150693_2151476_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A076YN96	Rhizobium_phage	32.4	5.0e-13
>prophage 141
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2156986	2163699	3697138		Trichoplusia_ni_ascovirus(25.0%)	8	NA	NA
WP_005012188.1|2156986_2157736_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	34.0	2.7e-16
WP_005012191.1|2157953_2158193_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	48.5	1.6e-10
WP_005012192.1|2158364_2159594_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_005012193.1|2159596_2160028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012194.1|2160024_2160624_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.9	2.6e-06
WP_005018885.1|2160636_2161122_+	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_005012197.1|2161121_2162156_+	sigma-E factor regulatory protein	NA	NA	NA	NA	NA
WP_005012204.1|2162196_2163699_+	Do family serine endopeptidase	NA	A0A1B1IT49	uncultured_Mediterranean_phage	31.2	1.1e-21
>prophage 142
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2167141	2177866	3697138	transposase	Streptococcus_phage(20.0%)	11	NA	NA
WP_038543755.1|2167141_2168938_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	1.4e-23
WP_005012210.1|2168961_2169846_+	signal peptidase I	NA	NA	NA	NA	NA
WP_101557771.1|2169842_2170607_+	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.5	1.6e-19
WP_005012216.1|2170603_2171494_+	GTPase Era	NA	NA	NA	NA	NA
WP_005012220.1|2171486_2172074_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_005012223.1|2172096_2173188_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	35.9	2.1e-17
WP_005011985.1|2173197_2174418_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005012225.1|2174826_2175537_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_005012227.1|2175629_2175878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012228.1|2175896_2176334_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
WP_005012229.1|2176351_2177866_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.9	7.3e-53
>prophage 143
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2184112	2186697	3697138	transposase	Ralstonia_virus(50.0%)	3	NA	NA
WP_005011985.1|2184112_2185333_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005012244.1|2185500_2185836_+	DUF2325 domain-containing protein	NA	NA	NA	NA	NA
WP_005012247.1|2186031_2186697_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	34.5	1.6e-15
>prophage 144
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2192738	2193959	3697138	transposase	Ralstonia_virus(100.0%)	1	NA	NA
WP_005011985.1|2192738_2193959_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
>prophage 145
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2202706	2204587	3697138		Planktothrix_phage(100.0%)	1	NA	NA
WP_005012277.1|2202706_2204587_+	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	2.0e-20
>prophage 146
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2210110	2213803	3697138		Acinetobacter_phage(50.0%)	2	NA	NA
WP_005012286.1|2210110_2211907_+	aminopeptidase P family protein	NA	A0A0P0I8D7	Acinetobacter_phage	49.7	1.3e-165
WP_005012289.1|2212150_2213803_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	53.5	1.7e-156
>prophage 147
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2218221	2220924	3697138		Staphylococcus_phage(50.0%)	2	NA	NA
WP_005012299.1|2218221_2219889_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	33.4	9.8e-67
WP_005012301.1|2220084_2220924_-	UDP-2,3-diacylglucosamine diphosphatase	NA	A0A218MKA7	uncultured_virus	48.1	1.9e-66
>prophage 148
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2237661	2240806	3697138	transposase	Ralstonia_virus(50.0%)	3	NA	NA
WP_005012353.1|2237661_2238666_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	60.8	4.4e-139
WP_005012355.1|2238693_2239563_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012356.1|2239729_2240806_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.8	1.9e-26
>prophage 149
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2246148	2250384	3697138	transposase	Synechococcus_phage(50.0%)	2	NA	NA
WP_005012364.1|2246148_2246832_-	Fe2+-dependent dioxygenase	NA	A0A1D8KSK5	Synechococcus_phage	39.5	3.9e-14
WP_005012365.1|2249163_2250384_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.2e-183
>prophage 150
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2262454	2263882	3697138		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_005012371.1|2262454_2263882_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	1.6e-41
>prophage 151
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2275490	2277539	3697138		Bacillus_phage(100.0%)	1	NA	NA
WP_005012382.1|2275490_2277539_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	28.0	3.2e-75
>prophage 152
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2288222	2290825	3697138	transposase	Ralstonia_virus(50.0%)	4	NA	NA
WP_005011985.1|2288222_2289443_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005012396.1|2289564_2289729_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_005012397.1|2289786_2289987_-	CsbD family protein	NA	NA	NA	NA	NA
WP_005012398.1|2290291_2290825_-	cytochrome b	NA	A0A0U2QLA7	Escherichia_phage	43.3	8.3e-12
>prophage 153
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2296447	2298724	3697138		Bacillus_phage(100.0%)	1	NA	NA
WP_005012399.1|2296447_2298724_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.3	6.6e-58
>prophage 154
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2311147	2315104	3697138	transposase	Leptospira_phage(33.33%)	4	NA	NA
WP_101557744.1|2311147_2312267_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	42.6	5.8e-55
WP_005011985.1|2312340_2313561_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_153566125.1|2313585_2313726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012418.1|2314129_2315104_-	tripartite tricarboxylate transporter substrate binding protein	NA	A0A1B1IU06	uncultured_Mediterranean_phage	24.3	9.6e-06
>prophage 155
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2321553	2327551	3697138		Bacillus_virus(33.33%)	4	NA	NA
WP_005012426.1|2321553_2324193_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	32.7	2.1e-103
WP_005012427.1|2324200_2325331_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	43.1	7.1e-77
WP_005012428.1|2325323_2326409_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_025341355.1|2326429_2327551_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	24.6	7.1e-13
>prophage 156
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2334473	2339979	3697138		Synechococcus_phage(25.0%)	6	NA	NA
WP_005012447.1|2334473_2335415_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	M4QF80	Synechococcus_phage	29.3	1.7e-12
WP_005012448.1|2335411_2336401_+	ADP-glyceromanno-heptose 6-epimerase	NA	M4PRR6	Cyanophage	31.9	1.7e-26
WP_005012449.1|2336489_2336867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012450.1|2336928_2337840_+	cysteine synthase CysM	NA	A0A1X9I5F1	Streptococcus_phage	41.0	2.3e-49
WP_005012455.1|2337905_2339045_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_005012456.1|2339064_2339979_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	33.8	3.9e-41
>prophage 157
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2349285	2353318	3697138		Bacillus_virus(50.0%)	4	NA	NA
WP_005012478.1|2349285_2350350_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.7	1.7e-27
WP_005012482.1|2350346_2351075_+	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA	NA
WP_005012483.1|2351088_2351997_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_005012484.1|2352010_2353318_+	sulfate adenylyltransferase	NA	A0A1V0SGC3	Hokovirus	27.2	4.2e-33
>prophage 158
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2356980	2358201	3697138	transposase	Ralstonia_virus(100.0%)	1	NA	NA
WP_005011985.1|2356980_2358201_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
>prophage 159
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2362238	2362784	3697138		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_005012499.1|2362238_2362784_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	38.4	3.2e-27
>prophage 160
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2367434	2368523	3697138		Synechococcus_phage(100.0%)	1	NA	NA
WP_005012512.1|2367434_2368523_+	phenylacetate-CoA oxygenase/reductase subunit PaaK	NA	V5UTY8	Synechococcus_phage	43.6	2.6e-12
>prophage 161
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2371524	2372745	3697138	transposase	Ralstonia_virus(100.0%)	1	NA	NA
WP_005011985.1|2371524_2372745_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
>prophage 162
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2385675	2386803	3697138		Mycoplasma_phage(100.0%)	1	NA	NA
WP_005012548.1|2385675_2386803_+	polyamine ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	35.3	6.3e-25
>prophage 163
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2397188	2405624	3697138		Catovirus(33.33%)	3	NA	NA
WP_005012567.1|2397188_2401049_+	ATP-dependent RNA helicase HrpA	NA	A0A1V0SBU4	Catovirus	28.6	1.8e-47
WP_005012570.1|2401094_2401994_-	lipid A hydroxylase LpxO	NA	H8ZJK8	Ostreococcus_tauri_virus	35.6	8.5e-33
WP_005012572.1|2402132_2405624_+	DNA polymerase III subunit alpha	NA	A0A0K1Y906	Streptomyces_phage	38.4	2.3e-187
>prophage 164
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2413433	2459072	3697138	transposase,protease	Ralstonia_virus(27.27%)	35	NA	NA
WP_017685673.1|2413433_2415209_+	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	29.3	8.9e-50
WP_005011985.1|2415332_2416553_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005012606.1|2417581_2418571_+	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_005012607.1|2418691_2419573_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_005012610.1|2420631_2421480_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_005012613.1|2421607_2422828_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	74.9	1.1e-181
WP_005012619.1|2422846_2423413_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_005012620.1|2423610_2424762_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_005012623.1|2424900_2425905_-	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	25.9	3.9e-18
WP_005012624.1|2426061_2427033_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012626.1|2427111_2427900_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_101557784.1|2427941_2428208_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_005012631.1|2428216_2429128_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_005012636.1|2431202_2432000_+	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_005012637.1|2432231_2432606_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_005012639.1|2432682_2433006_+	primosomal replication protein N	NA	NA	NA	NA	NA
WP_005012641.1|2433089_2433362_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_005012642.1|2433376_2433832_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_005012643.1|2433953_2434790_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012644.1|2434786_2436160_+	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	57.7	1.1e-132
WP_005019033.1|2436236_2437193_-	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_005012655.1|2437280_2438258_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_005012656.1|2438382_2440038_-	PhoH family protein	NA	A0A1L2CUJ9	Pectobacterium_phage	33.7	1.2e-69
WP_005012657.1|2440086_2440551_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012658.1|2440547_2441009_-	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_005012659.1|2441233_2442421_+	alanine transaminase	NA	NA	NA	NA	NA
WP_005019036.1|2442417_2443722_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_005012661.1|2443718_2445128_+	threonine synthase	NA	NA	NA	NA	NA
WP_005012662.1|2446575_2447595_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	34.8	3.0e-50
WP_005012663.1|2447603_2450309_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	25.1	6.8e-17
WP_005019040.1|2451163_2451526_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_005012668.1|2452092_2453553_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_005012669.1|2453815_2454889_+	3-deoxy-7-phosphoheptulonate synthase AroG	NA	A0A2I6UFP9	Klebsiella_phage	46.4	7.9e-78
WP_005012670.1|2454973_2456194_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.1	3.5e-183
WP_101557770.1|2457951_2459072_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
>prophage 165
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2465971	2530818	3697138	transposase,tRNA	Ralstonia_virus(15.79%)	53	NA	NA
WP_005012682.1|2465971_2467192_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.6	5.5e-184
WP_005012685.1|2467291_2468158_-	N-formylglutamate amidohydrolase	NA	NA	NA	NA	NA
WP_005012688.1|2468218_2469199_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_005012689.1|2469345_2470266_+	transcriptional regulator GcvA	NA	Q6JIH3	Burkholderia_virus	30.8	2.1e-26
WP_005012692.1|2470274_2471387_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_005019071.1|2472364_2472973_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012704.1|2474547_2474991_+	cytochrome c	NA	NA	NA	NA	NA
WP_080688213.1|2475057_2475714_-	cytochrome B	NA	NA	NA	NA	NA
WP_101557770.1|2475756_2476876_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
WP_005012709.1|2477045_2477327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012713.1|2478821_2479928_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012715.1|2480602_2481961_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	38.3	2.1e-19
WP_005012717.1|2482075_2482273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101557770.1|2482290_2483411_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
WP_076879487.1|2483504_2484059_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	43.7	1.3e-31
WP_005012730.1|2484646_2485963_-	ergothioneine biosynthesis protein EgtB	NA	NA	NA	NA	NA
WP_080691269.1|2487248_2487548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012745.1|2488563_2488863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012747.1|2490223_2491882_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA	NA
WP_005012749.1|2492030_2493251_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_005012751.1|2493368_2494652_-	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	68.4	4.6e-157
WP_005012753.1|2494655_2495597_-	AEC family transporter	NA	NA	NA	NA	NA
WP_005012755.1|2495706_2496165_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_026087875.1|2496545_2497166_+	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_025341372.1|2497519_2499994_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	32.1	4.0e-64
WP_005019089.1|2500884_2502129_+	cystathionine gamma-synthase family protein	NA	A0A0B5JD48	Pandoravirus	27.1	1.3e-10
WP_005012769.1|2502450_2502723_+	HU family DNA-binding protein	NA	A4JWM7	Burkholderia_virus	56.2	4.2e-20
WP_005012771.1|2503306_2504035_+	energy transducer TonB	NA	NA	NA	NA	NA
WP_005012772.1|2504056_2504974_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012775.1|2504973_2505483_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_005012777.1|2505599_2506271_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_100225809.1|2506326_2507448_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	27.7	2.9e-14
WP_005012781.1|2507467_2509312_+	potassium transporter Kup	NA	A7K9V6	Acanthocystis_turfacea_chlorella_virus	30.0	5.9e-65
WP_005012784.1|2509448_2510636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012786.1|2510936_2511722_+	acyltransferase	NA	NA	NA	NA	NA
WP_101557770.1|2511745_2512865_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
WP_005012789.1|2512969_2514307_-	argininosuccinate synthase	NA	A0A140XAJ5	Dickeya_phage	83.3	4.3e-57
WP_005012790.1|2514416_2515358_-	ornithine carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	26.0	5.8e-16
WP_005012795.1|2515413_2516595_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	28.4	2.1e-23
WP_005012796.1|2516753_2517044_+	DUF3579 domain-containing protein	NA	NA	NA	NA	NA
WP_005012797.1|2517090_2517759_-	2-hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	26.8	8.9e-11
WP_005012798.1|2517755_2518043_-	D-isomer specific 2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_005019092.1|2518419_2519205_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_005012801.1|2519237_2519972_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005011985.1|2520887_2522108_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005012803.1|2522183_2522465_+	malate dehydrogenase	NA	NA	NA	NA	NA
WP_005012804.1|2524296_2525292_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012805.1|2525334_2526105_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012806.1|2526230_2526494_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_017686019.1|2526695_2526842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2526895_2527846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012810.1|2527927_2528407_-	sensor protein	NA	NA	NA	NA	NA
WP_005012811.1|2529618_2530818_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	74.9	1.2e-178
>prophage 166
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2540822	2606734	3697138	transposase,protease,tRNA	Staphylococcus_phage(15.0%)	58	NA	NA
WP_005012828.1|2540822_2542181_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	33.6	1.0e-29
WP_005012829.1|2542274_2542853_+	superoxide dismutase	NA	NA	NA	NA	NA
WP_101557770.1|2542977_2544098_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
WP_005019101.1|2545529_2546735_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_005012833.1|2546798_2547248_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	6.8e-15
WP_005012834.1|2547380_2547626_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	75.0	6.5e-20
WP_005012835.1|2547850_2548165_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.9	8.4e-12
WP_101558028.1|2553328_2555524_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_005012839.1|2555577_2557887_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	9.1e-164
WP_005012840.1|2559240_2560908_+	MCE family protein	NA	NA	NA	NA	NA
WP_005012841.1|2560910_2561576_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_005012843.1|2561708_2565515_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_005012844.1|2565740_2566886_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012848.1|2567929_2569006_+	inner-membrane translocator	NA	NA	NA	NA	NA
WP_005012850.1|2569002_2569809_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.9	7.2e-15
WP_005012851.1|2569805_2570537_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	2.6e-16
WP_005012853.1|2570913_2572152_-	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	28.3	6.2e-26
WP_005012854.1|2572199_2572538_-	nitrogen regulatory protein P-II 1	NA	NA	NA	NA	NA
WP_005012067.1|2572785_2573736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012855.1|2574054_2574237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012861.1|2574302_2575523_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.6	4.2e-184
WP_005012863.1|2575582_2575846_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012866.1|2575967_2577467_+	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA	NA
WP_005012868.1|2577887_2578085_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_005012869.1|2578100_2578460_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_005012870.1|2578532_2579555_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.8	6.1e-27
WP_005012871.1|2579567_2581985_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_005012872.1|2582002_2582344_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	43.3	1.3e-13
WP_005012873.1|2582401_2582800_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_017685459.1|2583022_2583589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017685460.1|2583619_2584348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012882.1|2584729_2584984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012883.1|2585270_2586014_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012885.1|2586041_2587031_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012887.1|2587061_2588066_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012888.1|2589946_2590156_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	57.1	8.6e-13
WP_005012891.1|2590551_2591298_+	DNA/RNA non-specific endonuclease	NA	H6X497	Enterobacteria_phage	31.2	7.3e-22
WP_005012893.1|2591332_2593294_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	29.9	2.3e-27
WP_005012894.1|2593422_2593671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012896.1|2593800_2594079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012900.1|2594172_2594625_+	low affinity iron permease family protein	NA	G1JW61	Mycobacterium_phage	36.3	8.9e-07
WP_005012901.1|2594621_2595092_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012903.1|2595383_2595977_+	lipoprotein	NA	NA	NA	NA	NA
WP_005012910.1|2596024_2596309_+	CsbD family protein	NA	NA	NA	NA	NA
WP_005012912.1|2596365_2596548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012913.1|2596699_2596903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012914.1|2596997_2597240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012915.1|2597387_2597600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012916.1|2597727_2598810_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_005012919.1|2598900_2599116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012921.1|2599122_2599488_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_080687431.1|2601408_2601864_+	2,5-diketo-D-gluconic acid reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.5	1.9e-20
WP_101557744.1|2601887_2603007_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	42.6	5.8e-55
WP_005012927.1|2603031_2603487_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	48.3	2.1e-35
WP_005012930.1|2603491_2604478_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_005012931.1|2604524_2604731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012933.1|2604727_2605903_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_005012934.1|2606080_2606734_+	serine/threonine protein phosphatase 1	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	47.7	6.3e-54
>prophage 167
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2614956	2615418	3697138		Xanthomonas_phage(100.0%)	1	NA	NA
WP_005019132.1|2614956_2615418_-	hypothetical protein	NA	A0A292GL36	Xanthomonas_phage	43.4	2.0e-17
>prophage 168
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2620066	2622959	3697138	transposase	Ralstonia_virus(50.0%)	2	NA	NA
WP_005011985.1|2620066_2621287_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005012976.1|2621294_2622959_-	long-chain-fatty-acid--CoA ligase	NA	Q75ZG1	Hepacivirus	27.3	2.0e-40
>prophage 169
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2645038	2647132	3697138		Bacillus_phage(100.0%)	1	NA	NA
WP_005013017.1|2645038_2647132_+	ATP-dependent helicase	NA	A7KV33	Bacillus_phage	29.2	1.2e-61
>prophage 170
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2653617	2655303	3697138		Planktothrix_phage(100.0%)	1	NA	NA
WP_005013037.1|2653617_2655303_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	1.3e-13
>prophage 171
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2677820	2678345	3697138		Rhizobium_phage(100.0%)	1	NA	NA
WP_005013100.1|2677820_2678345_+	RNA polymerase sigma factor	NA	A0A076YQ50	Rhizobium_phage	28.1	2.2e-09
>prophage 172
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2696783	2697287	3697138		Cyanophage(100.0%)	1	NA	NA
WP_005013152.1|2696783_2697287_+	peroxiredoxin	NA	A0A0C5AE74	Cyanophage	43.0	1.5e-26
>prophage 173
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2710758	2711139	3697138		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_005013192.1|2710758_2711139_+	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	45.4	3.6e-17
>prophage 174
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2736774	2739900	3697138		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_005013249.1|2736774_2739900_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.8	1.1e-23
>prophage 175
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2748268	2751596	3697138		Staphylococcus_phage(50.0%)	3	NA	NA
WP_005013267.1|2748268_2749813_+	malonyl-CoA synthase	NA	A0A2H4PQM9	Staphylococcus_phage	25.5	1.1e-27
WP_005019205.1|2749985_2750954_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013271.1|2751071_2751596_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	58.9	2.4e-51
>prophage 176
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2754764	2757783	3697138		Indivirus(50.0%)	4	NA	NA
WP_005013279.1|2754764_2755559_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	26.3	1.6e-06
WP_005019211.1|2755662_2756418_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005019213.1|2756428_2757100_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_017685452.1|2757096_2757783_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	34.7	5.7e-21
>prophage 177
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2773430	2782072	3697138		Vibrio_phage(33.33%)	7	NA	NA
WP_005013320.1|2773430_2774273_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.8	4.2e-42
WP_005013321.1|2774591_2775908_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_005013323.1|2776096_2776543_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013326.1|2776683_2777109_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_050427710.1|2777239_2778199_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.0	1.3e-23
WP_005013329.1|2778927_2780043_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_017685457.1|2780143_2782072_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	G3MA91	Bacillus_virus	37.2	4.7e-20
>prophage 178
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2791859	2792171	3697138		Synechococcus_phage(100.0%)	1	NA	NA
WP_076879521.1|2791859_2792171_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	A0A0E3FP00	Synechococcus_phage	41.2	1.0e-06
>prophage 179
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2797022	2798045	3697138		Pseudomonas_phage(100.0%)	1	NA	NA
WP_005013355.1|2797022_2798045_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	46.2	3.9e-50
>prophage 180
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2802922	2806199	3697138		uncultured_Mediterranean_phage(100.0%)	3	NA	NA
WP_005013366.1|2802922_2803858_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.4e-41
WP_005013368.1|2803915_2805796_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_005013371.1|2805857_2806199_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	5.9e-11
>prophage 181
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2814711	2815932	3697138	transposase	Ralstonia_virus(100.0%)	1	NA	NA
WP_005011985.1|2814711_2815932_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
>prophage 182
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2844436	2845234	3697138		Clostridium_phage(100.0%)	1	NA	NA
WP_005013436.1|2844436_2845234_+	M23 family metallopeptidase	NA	I2E8W3	Clostridium_phage	47.3	1.3e-16
>prophage 183
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2855014	2858900	3697138		Mollivirus(33.33%)	4	NA	NA
WP_005013460.1|2855014_2855896_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0M4JBD3	Mollivirus	36.1	1.3e-49
WP_100225805.1|2856139_2856613_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.2	3.4e-17
WP_025341415.1|2856700_2857879_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_005019292.1|2857871_2858900_+	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	37.8	9.1e-39
>prophage 184
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2871571	2872498	3697138		Brevibacillus_phage(100.0%)	1	NA	NA
WP_005013486.1|2871571_2872498_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	26.2	1.7e-23
>prophage 185
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2888177	2892185	3697138		Anomala_cuprea_entomopoxvirus(33.33%)	4	NA	NA
WP_005013506.1|2888177_2888987_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.5	1.1e-12
WP_005013510.1|2888992_2889787_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_005013511.1|2889850_2890807_-	transaldolase	NA	M4SPL0	Cyanophage	30.7	3.6e-13
WP_025341418.1|2891087_2892185_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.8	4.2e-50
>prophage 186
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2895499	2896396	3697138		Ostreococcus_tauri_virus(100.0%)	1	NA	NA
WP_005013514.1|2895499_2896396_+	lipid A hydroxylase LpxO	NA	H8ZJK8	Ostreococcus_tauri_virus	38.3	2.2e-36
>prophage 187
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	2903465	3012293	3697138	transposase,integrase,tRNA	Leptospira_phage(13.79%)	100	2971292:2971351	3004580:3005245
WP_005013523.1|2903465_2904782_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	68.0	2.9e-154
WP_005013526.1|2904982_2905411_+	helix-turn-helix domain-containing protein	NA	A0A1X9I5R1	Streptococcus_phage	30.3	4.2e-06
WP_005011985.1|2905476_2906697_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005013527.1|2907051_2907528_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_005013528.1|2907786_2908395_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005013529.1|2908413_2909085_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_155278155.1|2909258_2911319_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5ESM9	Bathycoccus_sp._RCC1105_virus	42.5	6.8e-110
WP_017685806.1|2911228_2912014_+	dihydropteroate synthase	NA	NA	NA	NA	NA
WP_005013532.1|2912010_2913354_+	phosphoglucosamine mutase	NA	A0A1X9I671	Streptococcus_phage	27.1	2.7e-06
WP_005013533.1|2913538_2914354_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_005013534.1|2914419_2915901_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_005013535.1|2916099_2918172_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_005013536.1|2918391_2919429_+	phosphate ABC transporter substrate-binding protein PstS	NA	E3SKK5	Synechococcus_phage	40.2	8.5e-53
WP_005013537.1|2920615_2921473_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_005013538.1|2921500_2922277_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	29.7	5.6e-17
WP_005013539.1|2923104_2923614_+	DUF1993 domain-containing protein	NA	NA	NA	NA	NA
WP_005013542.1|2924690_2925461_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	56.6	2.8e-77
WP_025341421.1|2925457_2926468_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	45.9	4.4e-78
WP_101557920.1|2926526_2927607_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	37.5	2.0e-44
WP_101557831.1|2927775_2928895_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.2e-55
WP_080601033.1|2928896_2929640_+	class A beta-lactamase	NA	A0A1B0VBP7	Salmonella_phage	47.2	8.0e-53
WP_005013549.1|2929644_2930016_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013550.1|2930076_2930322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013551.1|2930428_2931928_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005013552.1|2932548_2932884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013553.1|2933142_2933274_+	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_005013555.1|2933303_2933801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013556.1|2933810_2934185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013558.1|2934275_2935568_+	aspartate carbamoyltransferase	NA	Q84489	Paramecium_bursaria_Chlorella_virus	37.2	2.2e-42
WP_005013559.1|2935684_2936584_-	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	32.5	5.9e-42
WP_005013561.1|2936735_2936954_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026087879.1|2937427_2939104_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_100225812.1|2939288_2940668_-	sensor histidine kinase	NA	W8CYF6	Bacillus_phage	27.3	2.0e-20
WP_005013564.1|2940783_2941479_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_005013565.1|2941818_2942880_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	64.0	5.7e-113
WP_005013566.1|2942925_2943477_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_005013567.1|2943483_2944404_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013568.1|2944543_2946841_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA	NA
WP_005011985.1|2946896_2948117_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005013569.1|2948375_2948981_+	DUF2889 domain-containing protein	NA	NA	NA	NA	NA
WP_005013570.1|2948991_2950152_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_017685913.1|2950173_2951055_+	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	31.4	1.1e-19
WP_005013572.1|2951351_2952050_+	TerC family protein	NA	W8EBD0	Pseudomonas_phage	33.8	8.9e-22
WP_005013573.1|2952191_2952914_+	TerC family protein	NA	A0A2R2YAT9	Pseudomonas_phage	43.8	8.0e-42
WP_005013577.1|2954000_2954780_+	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
WP_005013578.1|2954766_2955990_+	heme biosynthesis operon protein HemX	NA	NA	NA	NA	NA
WP_005013580.1|2957576_2958110_+	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	55.5	1.8e-51
WP_005013581.1|2958353_2959049_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_005013582.1|2959063_2959195_+	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_005013583.1|2959242_2960367_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA	NA
WP_005013585.1|2962707_2963115_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_005013586.1|2963376_2963637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_135238893.1|2963633_2963873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2963859_2964810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2964908_2965859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013587.1|2965908_2967117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013588.1|2967338_2967878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013589.1|2968102_2968507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013590.1|2968571_2969327_+	Flp pilus assembly protein CpaB	NA	NA	NA	NA	NA
WP_005013591.1|2969326_2970688_+	pilus assembly protein	NA	NA	NA	NA	NA
WP_005013592.1|2970684_2971308_+	FHA domain-containing protein	NA	NA	NA	NA	NA
2971292:2971351	attL	TGACCTGCTCCCCGTGATTAGTACGAAATCGATGTAGAGTCCGTTCCCAAAGGAATGGCA	NA	NA	NA	NA
WP_101557770.1|2971351_2972471_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
WP_005013595.1|2973123_2973879_+	pilus assembly protein	NA	NA	NA	NA	NA
WP_005013596.1|2974054_2974849_+	type II secretion system F family protein	NA	NA	NA	NA	NA
WP_005013597.1|2974845_2975283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_153566127.1|2975394_2975547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025341429.1|2977090_2978098_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_017685693.1|2978155_2978614_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005013601.1|2978687_2980034_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_005013602.1|2980051_2980423_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_005013604.1|2980422_2981892_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	36.1	5.8e-47
WP_025341430.1|2982038_2982773_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_005019347.1|2982786_2985501_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_005013609.1|2985752_2987117_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_005013610.1|2987156_2988215_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	43.7	4.9e-80
WP_005013611.1|2988242_2989061_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_005013612.1|2989098_2989377_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005013614.1|2990640_2990940_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013615.1|2991509_2992913_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_005013616.1|2992925_2993576_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_005011985.1|2993717_2994938_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005013617.1|2994968_2996045_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_005013618.1|2996191_2997322_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_005019351.1|2997508_2999134_+	membrane protein	NA	NA	NA	NA	NA
WP_005019353.1|2999140_2999956_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_110097765.1|2999970_3001041_+	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA	NA
WP_005013621.1|3001092_3001752_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_101557807.1|3002391_3003554_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	61.3	8.3e-97
WP_101557808.1|3003595_3003973_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	S5WIU1	Leptospira_phage	53.4	4.5e-28
WP_080687433.1|3003893_3004280_-|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_101557809.1|3004318_3004585_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_005013625.1|3004977_3005667_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
3004580:3005245	attR	TGCCATTCCTTTGGGAACGGACTCTACATCGATTTCGTACTAATCACGGGGAGCAGGTCAGACGCACCTTATGTGGGCCAGAGCAGGCAGGGCGTGATGTTGGCTGTGATGCGGCCGGTGCCAGCGGCACAACGGAGTACGGAGCCGATCGCACTCGTCACGCGCTCGGTCATATCTCGCGCACCTCGTGCCCGTACGACCCGCATCGTGCGGAGCGCCCTTGGCAAGGTTTCAGGCGCGGTTCGATGCGCTAGCAGCCTTATATCGCTCGATTCCGGGTCATGCGCGGCCCTTGCCATAAGCCAGTTGCTATGCGTCGATCAGAACTATCGATTGCCGCTGCCTAAGGGTGTCGCATAATCGTCCGGTGCGAGGCAAGGAGGAGAGCAATGGAGTAGGTGTATGTGGTCGTAGCCTTAGGGGCTGTTTTGGCTGGTTTTGTGCAGGGGCTGTCCGGCTTTGCATTTGGCATGGTGTCGATGTCGGTTTGGGTCTGGGTGCTCGAGCCGCGGTTGGCCGCAGTGCTGGCCGTTTTCGGTGCCATGATGGGGCAGGTCGTGGCGGCGGTGACAGTCAGGCGCGGTTTCTCCTGGTCTTTGTTGCTGCCCAGTTTGGACATGACTTGGTTCAAACTGATCCTGGGTTGCCTATTGGTGTTGTGGTGCC	NA	NA	NA	NA
WP_005013626.1|3005766_3005928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017685992.1|3006078_3006243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013627.1|3006369_3006606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013628.1|3006795_3007044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013629.1|3007157_3008528_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA	NA
WP_005013631.1|3008528_3009269_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_005013632.1|3009771_3011724_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	35.9	7.1e-125
WP_076879490.1|3011744_3012293_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.3	3.8e-12
>prophage 188
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3022265	3101204	3697138	transposase,holin,integrase,tRNA	Leptospira_phage(26.67%)	60	3028929:3028988	3087830:3087908
WP_005013645.1|3022265_3022715_-	dUTP diphosphatase	NA	Q2NP83	Xanthomonas_phage	62.8	2.3e-47
WP_005013648.1|3023234_3023867_-	DedA family protein	NA	NA	NA	NA	NA
WP_005013649.1|3023976_3024444_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930208.1|3024825_3025776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155267892.1|3025793_3026057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013651.1|3026069_3026774_+	dipeptidase PepE	NA	NA	NA	NA	NA
WP_005013652.1|3026792_3027263_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005019364.1|3027355_3028096_+	hypothetical protein	NA	NA	NA	NA	NA
3028929:3028988	attL	GCAATTCGTGCAGGCTCATCAGAAAGAAGGTCTTTTACCCCTGGGCTCTATGTCGGTGCC	NA	NA	NA	NA
WP_005013654.1|3029275_3030487_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.4	2.2e-36
WP_005013655.1|3030547_3031063_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_005019367.1|3031065_3033927_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.4	1.0e-71
WP_005013657.1|3033916_3034882_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_100225824.1|3035785_3037114_+	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_101557886.1|3037728_3038848_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
WP_005013661.1|3040351_3042634_+	AAA family ATPase	NA	A7KV33	Bacillus_phage	36.2	2.5e-105
WP_005013662.1|3042644_3045026_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_025341436.1|3045289_3047215_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.9	4.3e-66
WP_005013664.1|3047211_3048102_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_005013666.1|3049240_3050062_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_100225823.1|3050086_3051295_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA	NA
WP_005013668.1|3051578_3051860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013669.1|3052025_3052346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_101557814.1|3052385_3053472_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	37.5	2.0e-44
WP_005013671.1|3053668_3053929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013542.1|3054421_3055192_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	56.6	2.8e-77
WP_025341421.1|3055188_3056199_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	45.9	4.4e-78
WP_110097767.1|3056197_3057076_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	46.0	1.3e-54
WP_005013673.1|3057538_3058324_-	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_101557815.1|3059183_3060303_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	42.6	7.5e-55
WP_005012353.1|3061368_3062373_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	60.8	4.4e-139
WP_005013675.1|3062448_3063261_+	type I phosphodiesterase/nucleotide pyrophosphatase 1	NA	NA	NA	NA	NA
WP_005013676.1|3063488_3065660_+|holin	phospholipase C, phosphocholine-specific	holin	NA	NA	NA	NA
WP_005011985.1|3067120_3068341_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005013678.1|3068559_3069420_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013679.1|3069416_3070640_-	MFS transporter	NA	NA	NA	NA	NA
WP_005013681.1|3071473_3072256_-	deaminated glutathione amidase	NA	NA	NA	NA	NA
WP_005013682.1|3072281_3072500_-	SlyX family protein	NA	NA	NA	NA	NA
WP_005019379.1|3072573_3072843_+	YunC family protein	NA	NA	NA	NA	NA
WP_005013684.1|3073062_3073527_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_005013685.1|3073600_3073882_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_005013686.1|3073998_3074982_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_005013688.1|3075225_3076224_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_005013689.1|3076326_3076758_+	TonB family protein	NA	NA	NA	NA	NA
WP_005013690.1|3076822_3077734_+	phosphoglycerate dehydrogenase	NA	M1HBE3	Paramecium_bursaria_Chlorella_virus	30.7	3.7e-20
WP_005013691.1|3077866_3079948_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_005019382.1|3079986_3080691_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_005013692.1|3080783_3081668_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013693.1|3081742_3082144_-	DUF2809 domain-containing protein	NA	NA	NA	NA	NA
WP_005013694.1|3082234_3082381_-	50S ribosomal protein L36	NA	NA	NA	NA	NA
WP_005013695.1|3082642_3083578_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013697.1|3084928_3085405_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
WP_005013700.1|3087391_3087604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153566129.1|3087722_3087896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013702.1|3089807_3091472_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
3087830:3087908	attR	GCAATTCGTGCAGGCTCATCAGAAAGAAGGTCTTTTACCCCTGGGCTCTATGTCGGTGCCGTACTAAATCTGGGGGCAG	NA	NA	NA	NA
WP_005013703.1|3091484_3094196_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_005013704.1|3094741_3096496_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_005019390.1|3096492_3097119_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_005013706.1|3097115_3097970_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.8	1.4e-29
WP_005013707.1|3098089_3100144_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012067.1|3100253_3101204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 189
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3113969	3165412	3697138	transposase	Ralstonia_virus(28.57%)	42	NA	NA
WP_005011985.1|3113969_3115190_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005013723.1|3115265_3116387_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005013724.1|3116424_3117138_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.1	1.7e-12
WP_005013725.1|3117148_3118369_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.1	4.6e-183
WP_153566131.1|3119000_3119165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013727.1|3119151_3120102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013729.1|3120061_3120223_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
WP_005013730.1|3120263_3121190_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_005013731.1|3121203_3122076_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_005013732.1|3122238_3123186_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_026087954.1|3123524_3124106_+	PIN domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|3124683_3125634_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013735.1|3125613_3126366_-	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA	NA
WP_005019399.1|3126378_3127110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013736.1|3127266_3129432_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_005013738.1|3129521_3129791_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|3129879_3130086_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013740.1|3130084_3130603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814004.1|3130621_3131401_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_005013742.1|3131568_3132585_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_005013744.1|3132657_3133149_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|3133159_3134875_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005013747.1|3140691_3141642_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|3141740_3142523_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814013.1|3144563_3145949_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_005013750.1|3145967_3146573_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_005013751.1|3146569_3148426_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_005013752.1|3148422_3149223_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|3149237_3150431_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_017685830.1|3150560_3151472_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013755.1|3151594_3152818_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_155278156.1|3155259_3155427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013757.1|3155425_3156055_+	MarC family protein	NA	NA	NA	NA	NA
WP_025341443.1|3156062_3156269_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879523.1|3157509_3158250_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013759.1|3158233_3159214_+	D-2-hydroxyacid dehydrogenase	NA	M1HUT5	Acanthocystis_turfacea_Chlorella_virus	29.2	5.6e-14
WP_005013761.1|3159356_3159851_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005013762.1|3159852_3160770_+	FecR family protein	NA	NA	NA	NA	NA
WP_005013763.1|3160849_3162034_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_005013764.1|3162024_3162975_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005019415.1|3163038_3164412_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_005013766.1|3164683_3165412_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	42.7	2.5e-11
>prophage 190
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3177575	3180305	3697138		Staphylococcus_phage(100.0%)	1	NA	NA
WP_005013781.1|3177575_3180305_+	ribosome-associated ATPase/putative transporter RbbA	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	2.7e-21
>prophage 191
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3186643	3190071	3697138		uncultured_Caudovirales_phage(50.0%)	3	NA	NA
WP_005013802.1|3186643_3187003_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	57.1	2.3e-29
WP_005013805.1|3187049_3188453_-	CoA transferase	NA	NA	NA	NA	NA
WP_005013807.1|3188658_3190071_+	deoxyribodipyrimidine photo-lyase	NA	A0A1V0SGL1	Hokovirus	25.9	4.0e-37
>prophage 192
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3193389	3193884	3697138		Canarypox_virus(100.0%)	1	NA	NA
WP_005013814.1|3193389_3193884_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	7.5e-23
>prophage 193
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3205700	3206324	3697138		Bacteriophage(100.0%)	1	NA	NA
WP_005013846.1|3205700_3206324_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	37.0	3.5e-25
>prophage 194
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3210251	3211472	3697138	transposase	Ralstonia_virus(100.0%)	1	NA	NA
WP_005011985.1|3210251_3211472_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
>prophage 195
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3216740	3220451	3697138	transposase	Staphylococcus_phage(50.0%)	4	NA	NA
WP_005013871.1|3216740_3217202_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.9	2.5e-28
WP_005013873.1|3217300_3218251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3218349_3219300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013876.1|3219311_3220451_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	31.5	9.8e-18
>prophage 196
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3223882	3229090	3697138		Hokovirus(50.0%)	5	NA	NA
WP_005013893.1|3223882_3226249_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	36.0	4.5e-166
WP_005013895.1|3226407_3227235_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_005013898.1|3227245_3227644_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013899.1|3227705_3228485_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_005013901.1|3228481_3229090_-	ribonuclease HII	NA	D2TEQ2	Emiliania_huxleyi_virus	42.0	2.0e-25
>prophage 197
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3239357	3240116	3697138		Flavobacterium_phage(100.0%)	1	NA	NA
WP_005013920.1|3239357_3240116_-	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	30.8	4.7e-16
>prophage 198
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3249029	3250550	3697138		Mollivirus(100.0%)	1	NA	NA
WP_005013935.1|3249029_3250550_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.3	2.0e-95
>prophage 199
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3274166	3275940	3697138		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_005013977.1|3274166_3275360_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	34.5	1.7e-12
WP_080687435.1|3275202_3275940_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	52.5	2.6e-27
>prophage 200
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3288171	3288366	3697138		Pseudomonas_phage(100.0%)	1	NA	NA
WP_005013988.1|3288171_3288366_-	DUF3596 domain-containing protein	NA	A0A1W6JTA0	Pseudomonas_phage	52.8	1.1e-06
>prophage 201
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3295662	3296415	3697138		Planktothrix_phage(100.0%)	1	NA	NA
WP_005013994.1|3295662_3296415_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.3	4.3e-30
>prophage 202
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3301359	3302849	3697138		Staphylococcus_phage(50.0%)	2	NA	NA
WP_005014002.1|3301359_3302088_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.1	1.8e-09
WP_005014003.1|3302084_3302849_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	31.2	2.3e-18
>prophage 203
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3309390	3310935	3697138		Moraxella_phage(100.0%)	1	NA	NA
WP_005019488.1|3309390_3310935_-	CBS domain-containing protein	NA	A0A0R6PEZ3	Moraxella_phage	42.9	8.8e-38
>prophage 204
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3313943	3317600	3697138		Ectocarpus_siliculosus_virus(100.0%)	1	NA	NA
WP_005019492.1|3313943_3317600_+	transporter substrate-binding domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	32.0	6.5e-39
>prophage 205
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3321870	3322990	3697138	transposase	Leptospira_phage(100.0%)	1	NA	NA
WP_101557770.1|3321870_3322990_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
>prophage 206
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3338763	3339884	3697138	transposase	Leptospira_phage(100.0%)	1	NA	NA
WP_101557831.1|3338763_3339884_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.2e-55
>prophage 207
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3343344	3347200	3697138	transposase	Ralstonia_virus(33.33%)	4	NA	NA
WP_005011985.1|3343344_3344565_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
WP_005019508.1|3344869_3345640_+	amino acid racemase	NA	NA	NA	NA	NA
WP_005014033.1|3345730_3346432_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.0	2.1e-15
WP_005014034.1|3346432_3347200_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.3	5.2e-15
>prophage 208
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3350929	3351460	3697138		Vibrio_phage(100.0%)	1	NA	NA
WP_101557832.1|3350929_3351460_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	34.6	1.6e-15
>prophage 209
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3355897	3358309	3697138	transposase	Planktothrix_phage(50.0%)	2	NA	NA
WP_005014047.1|3355897_3356986_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	34.2	1.3e-22
WP_005014079.1|3357088_3358309_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	2.7e-183
>prophage 210
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3369333	3370029	3697138		Catovirus(100.0%)	1	NA	NA
WP_076879525.1|3369333_3370029_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	27.7	9.2e-11
>prophage 211
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3374517	3376129	3697138		Pithovirus(50.0%)	2	NA	NA
WP_005014060.1|3374517_3375018_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	36.1	1.4e-13
WP_005019523.1|3375169_3376129_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.1	2.7e-13
>prophage 212
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3380142	3381363	3697138	transposase	Ralstonia_virus(100.0%)	1	NA	NA
WP_038543829.1|3380142_3381363_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.1	4.6e-183
>prophage 213
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3385313	3386090	3697138		Planktothrix_phage(100.0%)	1	NA	NA
WP_005014068.1|3385313_3386090_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.0	1.9e-25
>prophage 214
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3390525	3391590	3697138		Ectocarpus_siliculosus_virus(100.0%)	1	NA	NA
WP_005014073.1|3390525_3391590_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.6	2.5e-07
>prophage 215
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3397029	3400065	3697138	transposase	uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_017685591.1|3397029_3398685_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	25.7	2.1e-13
WP_005014079.1|3398844_3400065_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	2.7e-183
>prophage 216
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3409239	3413963	3697138		Clostridium_phage(33.33%)	5	NA	NA
WP_005014088.1|3409239_3409782_+	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	42.3	1.8e-22
WP_005014089.1|3409818_3410589_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_025341458.1|3410762_3411395_+	guanylate kinase	NA	A0A223FN12	Murmansk_poxvirus	34.0	7.8e-17
WP_003811126.1|3411438_3411642_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_005014092.1|3411665_3413963_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.8	2.0e-06
>prophage 217
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3439155	3439905	3697138		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_005014110.1|3439155_3439905_+	glycerophosphodiester phosphodiesterase	NA	A0A1J0F961	Only_Syngen_Nebraska_virus	27.5	6.2e-13
>prophage 218
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3443537	3453895	3697138	transposase	uncultured_Mediterranean_phage(33.33%)	11	NA	NA
WP_005014115.1|3443537_3445811_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	34.2	4.1e-92
WP_005014116.1|3445807_3446203_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_025341459.1|3446199_3447612_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	25.4	2.0e-28
WP_101557841.1|3447593_3447824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101557770.1|3447797_3448917_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
WP_005014119.1|3448961_3449714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005014121.1|3450005_3450428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005014122.1|3450697_3451477_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_005014123.1|3451473_3452337_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	40.5	8.5e-14
WP_100225808.1|3452354_3452993_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	48.6	3.3e-31
WP_005014125.1|3453136_3453895_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	1.9e-70
>prophage 219
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3458698	3462804	3697138	tRNA	Moraxella_phage(66.67%)	4	NA	NA
WP_005014139.1|3458698_3459736_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	53.7	5.6e-97
WP_005014141.1|3459820_3461113_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.7	2.9e-66
WP_005014142.1|3461295_3462312_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005014143.1|3462420_3462804_+	thioredoxin	NA	V9SJ74	Achromobacter_phage	26.8	1.2e-09
>prophage 220
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3466049	3466814	3697138		Bacillus_virus(100.0%)	1	NA	NA
WP_005014168.1|3466049_3466814_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	6.3e-29
>prophage 221
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3469818	3529935	3697138	transposase,protease,tRNA	Ralstonia_virus(23.08%)	53	NA	NA
WP_005014173.1|3469818_3470307_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	39.1	1.3e-06
WP_005014175.1|3470299_3471148_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_005014177.1|3471239_3471737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005014180.1|3471874_3472234_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_025341464.1|3472230_3472515_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_005014183.1|3472511_3472994_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_005014185.1|3472995_3474624_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_005014197.1|3478352_3479324_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_005014198.1|3479313_3480696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3480838_3481789_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005014202.1|3482985_3484107_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_005014203.1|3485598_3486066_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005014210.1|3486136_3486787_+	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_005014211.1|3486873_3488013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012353.1|3488181_3489186_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	60.8	4.4e-139
WP_005014212.1|3489182_3490430_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_005014213.1|3490782_3491649_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.0	5.9e-23
WP_005014221.1|3493223_3493910_-	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA	NA
WP_005014223.1|3493906_3494947_-	NADP-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005014226.1|3495062_3495734_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005014227.1|3495730_3496723_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_005014228.1|3496719_3497658_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.4	8.6e-20
WP_005014229.1|3497654_3498809_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_005014235.1|3500298_3500781_+|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
WP_005014237.1|3500782_3501676_+	NRDE family protein	NA	Q9J5E1	Fowlpox_virus	34.8	6.5e-25
WP_005014239.1|3501672_3502116_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_005014241.1|3502128_3502503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005014242.1|3502645_3503044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076879494.1|3503170_3503458_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_005014247.1|3503454_3503871_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_005014248.1|3504046_3504679_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_005014250.1|3504707_3505154_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_005014253.1|3505440_3506592_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_005012353.1|3506705_3507710_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	60.8	4.4e-139
WP_005014256.1|3508693_3509401_+	translesion DNA synthesis-associated protein ImuA	NA	NA	NA	NA	NA
WP_032954285.1|3509333_3510785_+	DNA polymerase Y family protein	NA	NA	NA	NA	NA
WP_005014260.1|3510790_3513949_+	error-prone DNA polymerase	NA	M9MUV5	Rhodococcus_phage	29.0	1.2e-52
WP_005014263.1|3513961_3514483_-	DNA-deoxyinosine glycosylase	NA	NA	NA	NA	NA
WP_005014265.1|3514472_3515297_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_005014267.1|3515293_3515893_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	30.9	7.0e-07
WP_005014269.1|3516001_3517858_-	phosphoenolpyruvate carboxykinase (GTP)	NA	NA	NA	NA	NA
WP_005012353.1|3518006_3519011_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	60.8	4.4e-139
WP_005014271.1|3519219_3520482_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_005014274.1|3520486_3520822_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_005014275.1|3520818_3521748_+	DMT family transporter	NA	NA	NA	NA	NA
WP_005014277.1|3521752_3522466_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_005014278.1|3522569_3524027_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.6	1.0e-11
WP_005014281.1|3524023_3524320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005014283.1|3524444_3525803_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.5	1.4e-42
WP_005014286.1|3526882_3528001_+	3-deoxy-7-phosphoheptulonate synthase	NA	A0A0B6VT43	Edwardsiella_phage	46.5	3.4e-79
WP_005014289.1|3528073_3528445_+	lipoprotein	NA	NA	NA	NA	NA
WP_005014290.1|3528451_3529303_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.9	4.0e-16
WP_005014292.1|3529323_3529935_-|protease	ATP-dependent protease La (LON) domain-containing protein	protease	NA	NA	NA	NA
>prophage 222
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3547661	3548273	3697138		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_005014322.1|3547661_3548273_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	71.8	4.4e-81
>prophage 223
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3552656	3553385	3697138		Planktothrix_phage(100.0%)	1	NA	NA
WP_005014333.1|3552656_3553385_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.1	1.4e-09
>prophage 224
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3561954	3562494	3697138		Streptococcus_phage(100.0%)	1	NA	NA
WP_005014350.1|3561954_3562494_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	48.5	4.8e-31
>prophage 225
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3576549	3578010	3697138		Klosneuvirus(100.0%)	1	NA	NA
WP_005014377.1|3576549_3578010_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.0e-96
>prophage 226
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3586971	3587973	3697138		Planktothrix_phage(100.0%)	1	NA	NA
WP_005014400.1|3586971_3587973_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	29.5	1.8e-15
>prophage 227
NZ_CP007495	Bordetella holmesii 44057, complete genome	3697138	3607485	3694861	3697138	transposase,integrase,protease,tRNA	Escherichia_phage(15.38%)	74	3608379:3608438	3687300:3687709
WP_005011985.1|3607485_3608706_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.4	1.6e-183
3608379:3608438	attL	CCTCGGCCAGCCGGTCGGTCACTCGCTGGTAACGGCCCAGCCAGCTCAGCCTCTCCAGAT	NA	NA	NA	NA
WP_038543843.1|3608754_3609420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005019657.1|3609467_3610463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005014433.1|3613639_3614554_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005014435.1|3614703_3615669_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005014437.1|3615676_3616093_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_005014438.1|3616089_3617007_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005014440.1|3617018_3617438_+	EthD family reductase	NA	NA	NA	NA	NA
WP_005014441.1|3617346_3618735_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_005019661.1|3618731_3618983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005014444.1|3619153_3620110_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005014447.1|3620092_3620305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005014448.1|3620354_3621128_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005019667.1|3621124_3622258_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005014461.1|3622267_3623218_+	D-3-phosphoglycerate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	28.4	4.8e-18
WP_005014462.1|3623249_3624050_+	aldolase	NA	NA	NA	NA	NA
WP_080687437.1|3624007_3625219_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_101557807.1|3625046_3626209_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	61.3	8.3e-97
WP_005019669.1|3626321_3627290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005014483.1|3638703_3638949_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA	NA
WP_005014492.1|3639104_3639614_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005014495.1|3639659_3640640_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_005019676.1|3644074_3644764_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.8	4.1e-35
WP_005014502.1|3646132_3647071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005014504.1|3647052_3648759_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.1	2.2e-50
WP_100225795.1|3648836_3649940_+	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	38.7	1.3e-06
WP_005014509.1|3649992_3650742_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005014511.1|3650748_3652263_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.9	8.8e-83
WP_005019680.1|3652275_3652563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005014514.1|3652583_3653471_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005014516.1|3653621_3654128_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005014518.1|3654124_3655081_+	FecR family protein	NA	NA	NA	NA	NA
WP_005019683.1|3655268_3656615_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_080699076.1|3656582_3657008_-|transposase	transposase	transposase	S5WIU1	Leptospira_phage	53.3	3.3e-19
WP_101558036.1|3656842_3657406_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_032968029.1|3657560_3658331_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	56.6	3.7e-77
WP_025341421.1|3658327_3659338_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	45.9	4.4e-78
WP_005014534.1|3660154_3660349_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_005014536.1|3660350_3660692_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_005014539.1|3660701_3662564_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	38.7	1.4e-98
WP_005014543.1|3662603_3663110_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_005014544.1|3663113_3663437_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	54.2	6.8e-25
WP_005014545.1|3663438_3663843_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.8	1.9e-53
WP_005014546.1|3663879_3665091_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_005014547.1|3665112_3665661_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_005014551.1|3665885_3666377_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_017685984.1|3666591_3668622_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_005014553.1|3668695_3669898_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_005014556.1|3672408_3672690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005014560.1|3672776_3672950_+	OsmC family protein	NA	NA	NA	NA	NA
WP_005014564.1|3673061_3673406_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_005014566.1|3673477_3674146_+	anti-ECF sigma factor ChrR	NA	NA	NA	NA	NA
WP_005014572.1|3675561_3676605_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	29.2	1.4e-31
WP_076879527.1|3676601_3676703_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_101557770.1|3676794_3677914_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	43.0	1.5e-55
WP_032974133.1|3678932_3680153_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	75.1	7.9e-183
WP_005014581.1|3680203_3682633_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	51.4	3.6e-219
WP_005014587.1|3682798_3684097_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	54.3	3.1e-129
WP_005014589.1|3684201_3684855_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.9	2.0e-55
WP_005014590.1|3684857_3686168_-	trigger factor	NA	NA	NA	NA	NA
WP_005014595.1|3686395_3686935_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	35.8	4.3e-24
WP_101557809.1|3687412_3687679_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_135238891.1|3687717_3688083_+	hypothetical protein	NA	NA	NA	NA	NA
3687300:3687709	attR	ATCTGGAGAGGCTGAGCTGGCTGGGCCGTTACCAGCGAGTGACCGACCGGCTGGCCGAGGTGACCTGCTCCCGTGATTAGTACGAAATCGATGTAGAGTCCGTTCCCAAAGGAATGGCAATGAAGAAACGATTTACGGAAGAGCAAATCATCGGCGTGCTCAAGGAAGCCGATGCAGGTGCCAAGCCCGCAGAGTTGTGCCGCAAGCACGGAATCTCCGAGGCAACGTACTACAACTGGAAGGCGAAGTTCGGTGGCATGACGGTGTCGGACGCTCAGAGGCTCAAGGAGCTGGAGCAGGAGAACAACAAGCTCAAGAAGCTGTTGGCCGAGTCGATGCTGGACAAGGCGGCGCTTCAGGATCTGCTAAGCCGAAAGTAGTCAGCCCGCAGGCCAAACGCGAGGCGGTCA	NA	NA	NA	NA
WP_025341473.1|3687964_3688975_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	45.9	4.4e-78
WP_005013542.1|3688971_3689742_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	56.6	2.8e-77
WP_076879496.1|3689821_3690487_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	46.1	2.1e-49
WP_005014598.1|3690454_3690946_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_005014599.1|3691055_3691259_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	66.7	6.6e-18
WP_005014600.1|3691574_3691895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005014605.1|3691878_3692214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005014607.1|3692268_3692481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005014610.1|3692556_3692895_+	IS66 family insertion sequence hypothetical protein	NA	A0A218MNG9	uncultured_virus	50.0	3.7e-05
WP_100225806.1|3692861_3693227_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_005014618.1|3693289_3694861_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	47.5	2.0e-125
