assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000763475.1_ASM76347v1	NZ_CP009575	Listeria ivanovii subsp. londoniensis strain WSLC 30167 chromosome, complete genome	1	534160-540461	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas9,cas1,cas2	csa3,DinG,cas3,WYL,RT,cas9,cas1,cas2,DEDDh,cas14j,csn2	Type II-C, Type II-B,Type II-A, or Type II-C?,Type II-B	ATTTTGGTACTCTCTCAAGTTTTGGTATTAGGAAAT,ATTTTGGTACTCTCTCAAGTTTTGGTATTAGGAAAT,ATTTTGGTACTCTCTCAAGTTTTGGTATTAGGAAAT	36,36,36	0	0	NA	NA	NA:NA:NA	95,95,3	95	TypeII-C,TypeII-B,TypeII-A,orTypeII-C?,TypeII-B	csa3,DinG,cas3,WYL,RT,cas9,cas1,cas2,DEDDh,cas14j,csn2	NA|184aa|up_8|NZ_CP009575.1_517839_518391_+,NA|321aa|up_0|NZ_CP009575.1_533174_534137_+,NA	NA|188aa|up_9|NZ_CP009575.1_516973_517537_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|184aa|up_8|NZ_CP009575.1_517839_518391_+	NA	NA|194aa|up_7|NZ_CP009575.1_518381_518963_+	pfam08747, DUF1788, Domain of unknown function (DUF1788)	NA|1194aa|up_6|NZ_CP009575.1_518978_522560_+	NF033441, BREX_BrxC, BREX system P-loop protein BrxC	NA|1163aa|up_5|NZ_CP009575.1_522574_526063_+	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|815aa|up_4|NZ_CP009575.1_526072_528517_+	TIGR02687, conserved_hypothetical_protein, TIGR02687 family protein	cas9|1079aa|up_3|NZ_CP009575.1_528580_531817_+	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1	cas1|301aa|up_2|NZ_CP009575.1_531962_532865_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|103aa|up_1|NZ_CP009575.1_532869_533178_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	NA|321aa|up_0|NZ_CP009575.1_533174_534137_+	NA	NA|415aa|down_0|NZ_CP009575.1_541038_542283_+	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold	NA|297aa|down_1|NZ_CP009575.1_542350_543241_+	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|279aa|down_2|NZ_CP009575.1_543243_544080_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|810aa|down_3|NZ_CP009575.1_544095_546525_+	cd10791, GH38N_AMII_like_1, N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to alpha-mannosidases; glycoside hydrolase family 38 (GH38)	NA|290aa|down_4|NZ_CP009575.1_546538_547408_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|482aa|down_5|NZ_CP009575.1_547370_548816_+	pfam06824, Glyco_hydro_125, Metal-independent alpha-mannosidase (GH125)	NA|291aa|down_6|NZ_CP009575.1_548904_549777_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|583aa|down_7|NZ_CP009575.1_549898_551647_+	cd07010, cupin_PMI_type_I_N_bac, Phosphomannose isomerase in bacteria and archaea, N-terminal cupin domain	NA|472aa|down_8|NZ_CP009575.1_551812_553228_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_9|NZ_CP009575.1_553356_554361_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
GCF_000763475.1_ASM76347v1	NZ_CP009575	Listeria ivanovii subsp. londoniensis strain WSLC 30167 chromosome, complete genome	2	1327398-1327688	2	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,RT,cas9,cas1,cas2,DEDDh,cas14j,csn2	Orphan	AATCAAGTAAAAGATATAAGTTTATTA	27	0	0	NA	NA	NA	4	4	Orphan	csa3,DinG,cas3,WYL,RT,cas9,cas1,cas2,DEDDh,cas14j,csn2	NA,NA|172aa|down_9|NZ_CP009575.1_1344191_1344707_+	NA|267aa|up_9|NZ_CP009575.1_1316147_1316948_+	COG0796, MurI, Glutamate racemase [Cell envelope biogenesis, outer membrane]	NA|249aa|up_8|NZ_CP009575.1_1316960_1317707_+	PRK00173, rph, ribonuclease PH; Reviewed	NA|204aa|up_7|NZ_CP009575.1_1317711_1318323_+	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|175aa|up_6|NZ_CP009575.1_1318359_1318884_+	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|323aa|up_5|NZ_CP009575.1_1319662_1320631_+	NF033189, internalin_A, class 1 internalin InlA	NA|197aa|up_4|NZ_CP009575.1_1321329_1321920_+	NF033188, internalin_H, InlH/InlC2 family class 1 internalin	NA|244aa|up_3|NZ_CP009575.1_1321959_1322691_-	PRK06526, PRK06526, transposase; Provisional	NA|485aa|up_2|NZ_CP009575.1_1322687_1324142_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|252aa|up_1|NZ_CP009575.1_1324269_1325025_+	NF033189, internalin_A, class 1 internalin InlA	NA|313aa|up_0|NZ_CP009575.1_1325394_1326333_+	NF033188, internalin_H, InlH/InlC2 family class 1 internalin	NA|447aa|down_0|NZ_CP009575.1_1330438_1331779_+	NF033188, internalin_H, InlH/InlC2 family class 1 internalin	NA|231aa|down_1|NZ_CP009575.1_1332067_1332760_+	NF033189, internalin_A, class 1 internalin InlA	NA|377aa|down_2|NZ_CP009575.1_1333055_1334186_+	NF033189, internalin_A, class 1 internalin InlA	NA|321aa|down_3|NZ_CP009575.1_1334537_1335500_+	NF033189, internalin_A, class 1 internalin InlA	NA|619aa|down_4|NZ_CP009575.1_1336005_1337862_+	NF033189, internalin_A, class 1 internalin InlA	NA|336aa|down_5|NZ_CP009575.1_1338384_1339392_-	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|315aa|down_6|NZ_CP009575.1_1339771_1340716_+	NF033188, internalin_H, InlH/InlC2 family class 1 internalin	NA|232aa|down_7|NZ_CP009575.1_1341089_1341785_+	NF033189, internalin_A, class 1 internalin InlA	NA|322aa|down_8|NZ_CP009575.1_1342856_1343822_+	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]	NA|172aa|down_9|NZ_CP009575.1_1344191_1344707_+	NA
GCF_000763475.1_ASM76347v1	NZ_CP009575	Listeria ivanovii subsp. londoniensis strain WSLC 30167 chromosome, complete genome	3	2601093-2601246	3	CRISPRCasFinder	no	WYL	csa3,DinG,cas3,WYL,RT,cas9,cas1,cas2,DEDDh,cas14j,csn2	Unclear	TTTTTTTGGAAACAACGCTTCACTTTGTTACGCCTTGTATTGGAGTTCT	49	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,RT,cas9,cas1,cas2,DEDDh,cas14j,csn2	NA,NA|58aa|down_4|NZ_CP009575.1_2604169_2604343_-	WYL|299aa|up_9|NZ_CP009575.1_2583903_2584800_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|190aa|up_8|NZ_CP009575.1_2584844_2585414_-	cd06259, YdcF-like, YdcF-like	NA|303aa|up_7|NZ_CP009575.1_2585822_2586731_-	pfam07751, Abi_2, Abi-like protein	NA|1311aa|up_6|NZ_CP009575.1_2587737_2591670_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|315aa|up_5|NZ_CP009575.1_2591685_2592630_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|1092aa|up_4|NZ_CP009575.1_2592688_2595964_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|304aa|up_3|NZ_CP009575.1_2596342_2597254_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|155aa|up_2|NZ_CP009575.1_2597309_2597774_-	pfam01668, SmpB, SmpB protein	NA|794aa|up_1|NZ_CP009575.1_2597789_2600171_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|249aa|up_0|NZ_CP009575.1_2600204_2600951_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|158aa|down_0|NZ_CP009575.1_2601410_2601884_-	pfam01797, Y1_Tnp, Transposase IS200 like	NA|78aa|down_1|NZ_CP009575.1_2602059_2602293_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|248aa|down_2|NZ_CP009575.1_2602382_2603126_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|233aa|down_3|NZ_CP009575.1_2603328_2604027_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|58aa|down_4|NZ_CP009575.1_2604169_2604343_-	NA	NA|431aa|down_5|NZ_CP009575.1_2604444_2605737_-	PRK00077, eno, enolase; Provisional	NA|511aa|down_6|NZ_CP009575.1_2605851_2607384_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|252aa|down_7|NZ_CP009575.1_2607385_2608141_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|down_8|NZ_CP009575.1_2608186_2609377_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|down_9|NZ_CP009575.1_2609512_2610523_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I
GCF_000763475.1_ASM76347v1	NZ_CP009575	Listeria ivanovii subsp. londoniensis strain WSLC 30167 chromosome, complete genome	4	2761782-2762873	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	csn2,cas2,cas1,cas9	csa3,DinG,cas3,WYL,RT,cas9,cas1,cas2,DEDDh,cas14j,csn2	Type II-C,Type II-B,Type II-A	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	16,16,16	16	TypeII-C,TypeII-B,TypeII-A	csa3,DinG,cas3,WYL,RT,cas9,cas1,cas2,DEDDh,cas14j,csn2	NA|62aa|up_1|NZ_CP009575.1_2758643_2758829_-,NA|122aa|up_0|NZ_CP009575.1_2758992_2759358_+,NA|125aa|down_5|NZ_CP009575.1_2770077_2770452_-	NA|262aa|up_9|NZ_CP009575.1_2741165_2741951_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|159aa|up_8|NZ_CP009575.1_2742015_2742492_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|996aa|up_7|NZ_CP009575.1_2742491_2745479_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|281aa|up_6|NZ_CP009575.1_2745829_2746672_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_5|NZ_CP009575.1_2746717_2748199_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_4|NZ_CP009575.1_2748299_2749187_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|343aa|up_3|NZ_CP009575.1_2755484_2756513_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_2|NZ_CP009575.1_2756916_2758443_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|62aa|up_1|NZ_CP009575.1_2758643_2758829_-	NA	NA|122aa|up_0|NZ_CP009575.1_2758992_2759358_+	NA	csn2|221aa|down_0|NZ_CP009575.1_2762990_2763653_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP009575.1_2763642_2763984_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP009575.1_2763980_2764847_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NZ_CP009575.1_2764847_2768852_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|142aa|down_4|NZ_CP009575.1_2769632_2770058_-	pfam14567, SUKH_5, SMI1-KNR4 cell-wall	NA|125aa|down_5|NZ_CP009575.1_2770077_2770452_-	NA	NA|474aa|down_6|NZ_CP009575.1_2770477_2771899_-	pfam14436, EndoU_bacteria, Bacterial EndoU nuclease	NA|131aa|down_7|NZ_CP009575.1_2772288_2772681_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_8|NZ_CP009575.1_2772702_2773140_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_9|NZ_CP009575.1_2773322_2774069_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA
