The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009533	Pseudomonas rhizosphaerae strain DSM 16299 chromosome, complete genome	4688635	1018038	1027422	4688635		uncultured_Caudovirales_phage(42.86%)	8	NA	NA
WP_148308512.1|1018038_1019340_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	40.4	5.5e-73
WP_043187083.1|1019687_1020617_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_043187086.1|1020671_1021499_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	45.2	1.1e-50
WP_043187088.1|1021585_1021927_-	DUF305 domain-containing protein	NA	A0A218MND9	uncultured_virus	62.0	1.3e-18
WP_043187091.1|1022229_1022580_+	metalloregulator ArsR/SmtB family transcription factor	NA	A0A2H4J145	uncultured_Caudovirales_phage	58.6	6.2e-32
WP_043187093.1|1022602_1023892_+	arsenic transporter	NA	A0A2H4J144	uncultured_Caudovirales_phage	74.6	8.1e-178
WP_043187095.1|1023901_1024372_+	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	61.5	2.8e-51
WP_043187097.1|1024536_1027422_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	45.5	1.3e-178
>prophage 2
NZ_CP009533	Pseudomonas rhizosphaerae strain DSM 16299 chromosome, complete genome	4688635	1903817	1953184	4688635	holin,terminase,capsid,integrase,head,protease,tail,portal	Pseudomonas_phage(37.5%)	59	1892109:1892126	1943862:1943879
1892109:1892126	attL	CTGCACCAGCACCTTGCC	NA	NA	NA	NA
WP_084139759.1|1903817_1905404_-	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	27.0	2.0e-61
WP_043188871.1|1905409_1906618_-|integrase	site-specific integrase	integrase	J7HXC4	Pseudomonas_phage	60.1	1.6e-127
WP_043188874.1|1906876_1907230_-	hypothetical protein	NA	K7RW03	Vibrio_phage	56.4	1.1e-28
WP_043188878.1|1907226_1907538_-	hypothetical protein	NA	A0A2H4J7B8	uncultured_Caudovirales_phage	68.3	2.2e-36
WP_043188881.1|1907851_1910014_-	DNA cytosine methyltransferase	NA	Q5QF27	Pseudomonas_virus	65.7	6.6e-273
WP_043188883.1|1910148_1911051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043188887.1|1911400_1911952_-	hypothetical protein	NA	J9Q748	Salmonella_phage	31.7	7.1e-14
WP_043188890.1|1912349_1912568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043188893.1|1912649_1913201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148308538.1|1913318_1913543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043188900.1|1913612_1913840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043188902.1|1913854_1914094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043188904.1|1914147_1914963_-	DUF2303 family protein	NA	K7ZMK3	Xanthomonas_citri_phage	38.9	6.1e-46
WP_148308539.1|1915364_1915568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_148308540.1|1915637_1915871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043188907.1|1916138_1916519_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JA92	uncultured_Caudovirales_phage	63.4	1.8e-24
WP_043188909.1|1917088_1917340_-	DUF1654 domain-containing protein	NA	NA	NA	NA	NA
WP_084139760.1|1917512_1918361_-	helix-turn-helix domain-containing protein	NA	K7P850	Enterobacteria_phage	46.5	1.2e-44
WP_043193501.1|1918706_1919366_+	phage antirepressor KilAC domain-containing protein	NA	A0A0U4J8Z7	Pseudomonas_phage	55.8	1.1e-53
WP_043188914.1|1919377_1920139_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_043188916.1|1920135_1920810_+	replication P family protein	NA	A0A1B0YZY6	Pseudomonas_phage	47.7	3.8e-46
WP_043193502.1|1920812_1921118_+	DUF1364 domain-containing protein	NA	A0A2H4JIC4	uncultured_Caudovirales_phage	62.5	2.8e-28
WP_043188919.1|1921114_1921543_+	VRR-NUC domain-containing protein	NA	A0A2D1GNH3	Pseudomonas_phage	66.9	1.7e-44
WP_043188922.1|1921539_1922835_+|integrase	site-specific integrase	integrase	A0A2D1GND4	Pseudomonas_phage	54.5	9.1e-129
WP_043188923.1|1922831_1923152_+	hypothetical protein	NA	A0A2D1GNG3	Pseudomonas_phage	68.9	4.2e-35
WP_043188924.1|1923155_1923719_+	hypothetical protein	NA	A0A2H4J2J2	uncultured_Caudovirales_phage	59.0	3.3e-67
WP_043188925.1|1923870_1924200_+|holin	phage holin, lambda family	holin	A0A1V0DYG4	Shewanella_phage	47.6	1.5e-11
WP_043188926.1|1924196_1924625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043188930.1|1924796_1925135_+	HNH endonuclease	NA	B5WZZ4	Pseudomonas_phage	51.9	2.9e-26
WP_043188932.1|1925291_1925798_+	hypothetical protein	NA	Q3HQS6	Burkholderia_phage	45.6	4.6e-20
WP_167335533.1|1925797_1927483_+|terminase	terminase large subunit	terminase	A0A2H4JDK9	uncultured_Caudovirales_phage	82.0	3.1e-246
WP_167335520.1|1927479_1927641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043188937.1|1927633_1928935_+|portal	phage portal protein	portal	H2BDA8	Pseudomonas_virus	71.2	3.5e-181
WP_043188939.1|1928938_1929796_+|protease	Clp protease ClpP	protease	A0A1V0E8B8	Vibrio_phage	63.6	2.0e-95
WP_043188941.1|1929798_1930986_+|capsid	phage major capsid protein	capsid	H2BDB0	Pseudomonas_virus	69.8	1.4e-147
WP_043188945.1|1931034_1931559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043188947.1|1931562_1931904_+|head,tail	phage gp6-like head-tail connector protein	head,tail	Q3HQT2	Burkholderia_phage	49.5	2.1e-16
WP_084139761.1|1931900_1932227_+|head,tail	head-tail adaptor protein	head,tail	A0A2H4JC00	uncultured_Caudovirales_phage	46.4	1.4e-17
WP_167335521.1|1932235_1932403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043188950.1|1932406_1932907_+	HK97 gp10 family phage protein	NA	A0A2D1GNN2	Pseudomonas_phage	67.7	1.6e-60
WP_043188953.1|1932899_1933286_+	DUF3168 domain-containing protein	NA	A0A2D1GNT4	Pseudomonas_phage	82.8	1.9e-53
WP_043188956.1|1933340_1933841_+	hypothetical protein	NA	A0A2D1GNF2	Pseudomonas_phage	72.1	1.2e-63
WP_043188958.1|1933880_1934225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043188961.1|1934221_1934458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043188963.1|1934499_1937811_+|tail	phage tail tape measure protein	tail	A0A2D1GNQ1	Pseudomonas_phage	35.1	5.6e-90
WP_043188966.1|1937810_1938149_+|tail	phage tail protein	tail	A0A0S2SYI2	Pseudomonas_phage	49.1	4.6e-24
WP_043188969.1|1938145_1938895_+|tail	phage minor tail protein L	tail	A0A0S2SY57	Pseudomonas_phage	76.3	1.7e-119
WP_043188972.1|1938897_1939656_+	C40 family peptidase	NA	A0A2H4J1J7	uncultured_Caudovirales_phage	74.8	1.4e-116
WP_043188974.1|1939683_1940028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043188977.1|1940084_1940672_+|tail	tail assembly protein	tail	A0A2H4J1H0	uncultured_Caudovirales_phage	74.7	1.8e-71
WP_084139762.1|1940729_1946279_+	DUF1983 domain-containing protein	NA	A0A2H4J8Z6	uncultured_Caudovirales_phage	62.6	0.0e+00
1943862:1943879	attR	GGCAAGGTGCTGGTGCAG	NA	NA	NA	NA
WP_148308541.1|1946591_1947464_+	hypothetical protein	NA	A0A1S5R1H4	Pseudomonas_phage	35.0	3.2e-29
WP_043188980.1|1947511_1947742_+	hypothetical protein	NA	A0A2H4J658	uncultured_Caudovirales_phage	53.3	2.2e-09
WP_043188983.1|1947798_1948239_+	lysozyme	NA	A0A088FRS5	Escherichia_phage	62.3	3.4e-43
WP_043188986.1|1948290_1948521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043188990.1|1948583_1949114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043188995.1|1949335_1950130_+	DNA adenine methylase	NA	Q5ZQW7	Pseudomonas_phage	67.8	4.5e-102
WP_148308542.1|1950467_1951472_-	hypothetical protein	NA	Q2P9X7	Enterobacteria_phage	41.3	2.6e-67
WP_043188998.1|1951471_1953184_-	AAA family ATPase	NA	Q2P9X8	Enterobacteria_phage	46.9	2.8e-133
>prophage 3
NZ_CP009533	Pseudomonas rhizosphaerae strain DSM 16299 chromosome, complete genome	4688635	2409996	2418962	4688635		uncultured_Caudovirales_phage(66.67%)	12	NA	NA
WP_043189814.1|2409996_2411448_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	40.4	1.8e-88
WP_052393394.1|2411644_2411989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_193385561.1|2411994_2412375_-	helix-turn-helix domain-containing protein	NA	E5FFF8	Burkholderia_phage	41.0	8.9e-08
WP_043189819.1|2412678_2412939_+	ogr/Delta-like zinc finger family protein	NA	Q9ZXJ1	Pseudomonas_virus	44.6	1.4e-12
WP_043189821.1|2413045_2414005_-	2-hydroxyacid dehydrogenase	NA	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	29.3	6.3e-18
WP_052393395.1|2414208_2415750_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_043189823.1|2415757_2416042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043189826.1|2416567_2416960_+	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	72.9	4.8e-49
WP_043189828.1|2416961_2417321_+	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	57.5	1.9e-31
WP_043189830.1|2417320_2417614_+	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	60.6	1.5e-23
WP_043189832.1|2417610_2417946_+	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	68.5	4.2e-38
WP_043189835.1|2417942_2418962_+	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	78.8	3.4e-147
>prophage 4
NZ_CP009533	Pseudomonas rhizosphaerae strain DSM 16299 chromosome, complete genome	4688635	3871458	3929748	4688635	holin,protease	Enterobacteria_phage(23.08%)	51	NA	NA
WP_177327959.1|3871458_3871908_-|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
WP_043192314.1|3872128_3872533_+	RNA-binding protein S4	NA	NA	NA	NA	NA
WP_043192315.1|3872649_3873447_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_043192316.1|3873553_3874456_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_043192317.1|3874634_3876176_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	46.5	6.2e-124
WP_043192318.1|3876340_3876580_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_167335528.1|3876569_3876782_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_043192319.1|3876998_3877472_-	surface antigen	NA	NA	NA	NA	NA
WP_043192320.1|3877765_3880102_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA	NA
WP_043192321.1|3880098_3880962_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA	NA
WP_043192322.1|3881056_3881932_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_043192323.1|3882004_3882667_-	GMP/IMP nucleotidase	NA	NA	NA	NA	NA
WP_043192324.1|3882758_3883325_+	ADP compounds hydrolase NudE	NA	NA	NA	NA	NA
WP_043192325.1|3883321_3884149_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA	NA
WP_043192326.1|3884206_3885589_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_043192327.1|3885585_3887400_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_043192328.1|3887492_3888038_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.7	2.2e-52
WP_043192329.1|3888034_3888910_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	63.9	2.1e-105
WP_043192330.1|3888906_3889989_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	54.5	2.0e-100
WP_043192331.1|3890210_3893132_+	aminotransferase	NA	NA	NA	NA	NA
WP_043192332.1|3893233_3894340_+	agmatine deiminase	NA	M1ICB7	Acanthocystis_turfacea_Chlorella_virus	48.9	9.3e-106
WP_043192333.1|3894610_3895900_+	OprD family porin	NA	NA	NA	NA	NA
WP_043192334.1|3896146_3897070_+|protease	CAAX amino protease	protease	NA	NA	NA	NA
WP_043192335.1|3897235_3898495_-	sodium:proton antiporter	NA	A0A2H4J178	uncultured_Caudovirales_phage	86.0	5.1e-108
WP_043192336.1|3898598_3899765_-	MFS transporter	NA	NA	NA	NA	NA
WP_043192337.1|3900034_3900421_+	MAPEG family protein	NA	A0A2H4J146	uncultured_Caudovirales_phage	75.0	2.2e-46
WP_043192338.1|3900477_3900885_-	DUF1090 domain-containing protein	NA	NA	NA	NA	NA
WP_043192339.1|3901137_3902331_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	57.6	3.9e-118
WP_043192340.1|3902343_3903345_-	ArsR family transcriptional regulator	NA	NA	NA	NA	NA
WP_043192341.1|3903537_3905535_+	transketolase	NA	NA	NA	NA	NA
WP_043192342.1|3905773_3906829_+	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_043192343.1|3906843_3908007_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_043192344.1|3908034_3908256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043192345.1|3908335_3908548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043192346.1|3908595_3908922_+	MliC family protein	NA	NA	NA	NA	NA
WP_043192347.1|3909028_3910093_+	fructose-bisphosphate aldolase class II	NA	NA	NA	NA	NA
WP_043192348.1|3910320_3912450_+	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	34.3	4.2e-22
WP_043192349.1|3912506_3913007_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_043192350.1|3913018_3913315_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_043192351.1|3913305_3913776_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_043192352.1|3913820_3916010_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_043192353.1|3916266_3917445_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_043192354.1|3917546_3918932_-	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.6	1.1e-50
WP_043192355.1|3918999_3920427_-	multidrug transporter subunit MdtD	NA	A0A0M3UL24	Mycobacterium_phage	28.3	4.5e-20
WP_043192356.1|3920558_3921887_-|protease	Zn-dependent protease	protease	NA	NA	NA	NA
WP_043192357.1|3921883_3923326_-	TldD/PmbA family protein	NA	NA	NA	NA	NA
WP_043192358.1|3923500_3925207_-|holin	choline dehydrogenase	holin	A0A1V0S9M4	Catovirus	30.1	4.8e-53
WP_043192359.1|3925297_3926770_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_043192360.1|3926818_3927412_-	transcriptional regulator BetI	NA	NA	NA	NA	NA
WP_043192361.1|3927724_3928906_-|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	37.1	5.0e-25
WP_043192362.1|3928902_3929748_-|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
