assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000758365.1_ASM75836v1	NZ_CP007646	Ligilactobacillus salivarius strain JCM1046 chromosome, complete genome	1	810173-812140	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas1,cas2,csm6,DEDDh	csa3,cas14k,DEDDh,cas3,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas1,cas2,csm6,Cas14u_CAS-V	Type III-B,Type III-A,Type III-D,Type III-C	AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC,AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC,AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC	36,36,36	3	3	810651-810686|811025-811059|811465-811502	NZ_CP007646.1_912623-912588|NZ_CP007648.1_7684-7650|NZ_CP007648.1_23503-23466	NA:NA:NA	25,26,26	26	TypeIII-B,TypeIII-A,TypeIII-D,TypeIII-C	csa3,cas14k,DEDDh,cas3,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas1,cas2,csm6,Cas14u_CAS-V,cas14j,c2c9_V-U4	NA,NA|201aa|down_4|NZ_CP007646.1_818979_819582_-,NA|204aa|down_9|NZ_CP007646.1_822152_822764_-	NA|437aa|up_9|NZ_CP007646.1_798200_799511_+	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|468aa|up_8|NZ_CP007646.1_799628_801032_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	cas6|245aa|up_7|NZ_CP007646.1_802691_803426_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas10|760aa|up_6|NZ_CP007646.1_803458_805738_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|147aa|up_5|NZ_CP007646.1_805739_806180_+	pfam03750, Csm2_III-A, Csm2 Type III-A	csm3gr7|222aa|up_4|NZ_CP007646.1_806199_806865_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm4gr5|301aa|up_3|NZ_CP007646.1_806868_807771_+	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain	csm5gr7|331aa|up_2|NZ_CP007646.1_807787_808780_+	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5	cas1|303aa|up_1|NZ_CP007646.1_808804_809713_+	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas2|102aa|up_0|NZ_CP007646.1_809715_810021_+	TIGR01573, cas2, CRISPR-associated endonuclease Cas2	csm6|412aa|down_0|NZ_CP007646.1_812221_813457_+	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	NA|219aa|down_1|NZ_CP007646.1_813611_814268_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|223aa|down_2|NZ_CP007646.1_814283_814952_+	sd00006, TPR, Tetratricopeptide repeat	NA|825aa|down_3|NZ_CP007646.1_814944_817419_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|201aa|down_4|NZ_CP007646.1_818979_819582_-	NA	DEDDh|383aa|down_5|NZ_CP007646.1_819633_820782_-	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family	NA|66aa|down_6|NZ_CP007646.1_820783_820981_-	PRK05257, PRK05257, malate:quinone oxidoreductase; Validated	NA|188aa|down_7|NZ_CP007646.1_820986_821550_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|177aa|down_8|NZ_CP007646.1_821596_822127_-	pfam14470, bPH_3, Bacterial PH domain	NA|204aa|down_9|NZ_CP007646.1_822152_822764_-	NA
GCF_000758365.1_ASM75836v1	NZ_CP007646	Ligilactobacillus salivarius strain JCM1046 chromosome, complete genome	2	1762360-1762460	2	CRISPRCasFinder	no	csa3,Cas14u_CAS-V	csa3,cas14k,DEDDh,cas3,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas1,cas2,csm6,Cas14u_CAS-V	Type I-A	ACCAACAACTCGGGTAGTGATAA	23	0	0	NA	NA	NA	1	1	TypeI-A	csa3,cas14k,DEDDh,cas3,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas1,cas2,csm6,Cas14u_CAS-V,cas14j,c2c9_V-U4	NA,NA	NA|205aa|up_9|NZ_CP007646.1_1752749_1753364_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|186aa|up_8|NZ_CP007646.1_1753718_1754276_+	pfam09515, Thia_YuaJ, Thiamine transporter protein (Thia_YuaJ)	NA|634aa|up_7|NZ_CP007646.1_1754406_1756308_+	COG3590, PepO, Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]	NA|282aa|up_6|NZ_CP007646.1_1756436_1757282_+	cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids	NA|198aa|up_5|NZ_CP007646.1_1757320_1757914_-	COG5658, COG5658, Predicted integral membrane protein [Function unknown]	NA|282aa|up_4|NZ_CP007646.1_1758093_1758939_+	PRK07105, PRK07105, pyridoxamine kinase; Validated	NA|167aa|up_3|NZ_CP007646.1_1758928_1759429_+	pfam07155, ECF-ribofla_trS, ECF-type riboflavin transporter, S component	NA|174aa|up_2|NZ_CP007646.1_1759769_1760291_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|186aa|up_1|NZ_CP007646.1_1760795_1761353_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|69aa|up_0|NZ_CP007646.1_1761626_1761833_+	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional	NA|160aa|down_0|NZ_CP007646.1_1766245_1766725_-	cd16361, VOC_ShValD_like, vicinal oxygen chelate (VOC) family protein similar to Streptomyces hygroscopicus ValD protein	NA|280aa|down_1|NZ_CP007646.1_1766753_1767593_-	cd19157, AKR_AKR5G1-3, AKR5G family of aldo-keto reductase (AKR)	NA|430aa|down_2|NZ_CP007646.1_1767869_1769159_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|106aa|down_3|NZ_CP007646.1_1769274_1769592_+	pfam01638, HxlR, HxlR-like helix-turn-helix	NA|255aa|down_4|NZ_CP007646.1_1769705_1770470_-	pfam03649, UPF0014, Uncharacterized protein family (UPF0014)	NA|218aa|down_5|NZ_CP007646.1_1770450_1771104_-	PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional	NA|409aa|down_6|NZ_CP007646.1_1771252_1772479_-	cd17353, MFS_OFA_like, Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters	NA|165aa|down_7|NZ_CP007646.1_1772760_1773255_+	cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)	NA|175aa|down_8|NZ_CP007646.1_1773314_1773839_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	Cas14u_CAS-V|407aa|down_9|NZ_CP007646.1_1774261_1775482_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_000758365.1_ASM75836v1	NZ_CP007650	Ligilactobacillus salivarius strain JCM1046 plasmid pCTN1046, complete sequence	1	30865-30943	1	CRISPRCasFinder	no			Orphan	CCGGTTGGCAGGCAACGGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas14k,DEDDh,cas3,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas1,cas2,csm6,Cas14u_CAS-V,cas14j,c2c9_V-U4	NA|95aa|up_9|NZ_CP007650.1_18834_19119_+,NA|172aa|up_4|NZ_CP007650.1_23626_24142_+,NA|55aa|up_3|NZ_CP007650.1_24157_24322_+,NA|92aa|up_2|NZ_CP007650.1_24367_24643_-,NA|48aa|up_1|NZ_CP007650.1_27955_28099_+,NA|101aa|down_2|NZ_CP007650.1_32267_32570_-	NA|95aa|up_9|NZ_CP007650.1_18834_19119_+	NA	NA|148aa|up_8|NZ_CP007650.1_19115_19559_+	COG3428, COG3428, Predicted membrane protein [Function unknown]	NA|441aa|up_7|NZ_CP007650.1_19539_20862_+	COG3428, COG3428, Predicted membrane protein [Function unknown]	NA|192aa|up_6|NZ_CP007650.1_21047_21623_-	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|345aa|up_5|NZ_CP007650.1_21792_22827_-	pfam02486, Rep_trans, Replication initiation factor	NA|172aa|up_4|NZ_CP007650.1_23626_24142_+	NA	NA|55aa|up_3|NZ_CP007650.1_24157_24322_+	NA	NA|92aa|up_2|NZ_CP007650.1_24367_24643_-	NA	NA|48aa|up_1|NZ_CP007650.1_27955_28099_+	NA	NA|403aa|up_0|NZ_CP007650.1_28685_29894_-	pfam01051, Rep_3, Initiator Replication protein	NA|172aa|down_0|NZ_CP007650.1_31003_31519_-	pfam18813, PBECR4, phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease4	NA|166aa|down_1|NZ_CP007650.1_31523_32021_-	COG2433, COG2433, Uncharacterized conserved protein [Function unknown]	NA|101aa|down_2|NZ_CP007650.1_32267_32570_-	NA	NA|190aa|down_3|NZ_CP007650.1_32583_33153_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
GCF_000758365.1_ASM75836v1	NZ_CP007647	Ligilactobacillus salivarius strain JCM1046 plasmid pMP1046A, complete sequence	1	216880-216994	1	CRISPRCasFinder	no		Cas14u_CAS-V,cas14j	Orphan	TTGAGGCAATGTAGTACCTATCTTTCCCATTAATT	35	1	2	216915-216959|216915-216959	NZ_CP007646.1_1626085-1626129|NZ_CP007646.1_1358706-1358750	NA	1	1	Orphan	csa3,cas14k,DEDDh,cas3,DinG,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas1,cas2,csm6,Cas14u_CAS-V,cas14j,c2c9_V-U4	NA,NA|135aa|down_1|NZ_CP007647.1_218526_218931_-	NA|664aa|up_9|NZ_CP007647.1_204294_206286_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|218aa|up_8|NZ_CP007647.1_206303_206957_-	PRK01362, PRK01362, fructose-6-phosphate aldolase	NA|358aa|up_7|NZ_CP007647.1_207465_208539_-	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family	NA|350aa|up_6|NZ_CP007647.1_208561_209611_-	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|424aa|up_5|NZ_CP007647.1_209624_210896_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|99aa|up_4|NZ_CP007647.1_210922_211219_-	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|151aa|up_3|NZ_CP007647.1_211253_211706_-	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|267aa|up_2|NZ_CP007647.1_211887_212688_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|789aa|up_1|NZ_CP007647.1_212811_215178_+	PRK05261, PRK05261, phosphoketolase	NA|430aa|up_0|NZ_CP007647.1_215499_216789_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|173aa|down_0|NZ_CP007647.1_217954_218473_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|135aa|down_1|NZ_CP007647.1_218526_218931_-	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
