assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000758325.1_ASM75832v1	NZ_CP009459	Cedecea neteri strain ND14a, complete genome	1	1679423-1679498	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	GGAGAGGGGGAAATCAGAAATGGT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA,NA	NA|539aa|up_9|NZ_CP009459.1_1668952_1670569_-	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|455aa|up_8|NZ_CP009459.1_1670873_1672238_+	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family	NA|290aa|up_7|NZ_CP009459.1_1672261_1673131_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|348aa|up_6|NZ_CP009459.1_1673135_1674179_+	COG3053, CitC, Citrate lyase synthetase [Energy production and conversion]	NA|98aa|up_5|NZ_CP009459.1_1674203_1674497_+	PRK13253, PRK13253, citrate lyase subunit gamma; Provisional	NA|292aa|up_4|NZ_CP009459.1_1674493_1675369_+	TIGR01588, Citrate_lyase_subunit_beta, citrate lyase, beta subunit	NA|508aa|up_3|NZ_CP009459.1_1675379_1676903_+	COG3051, CitF, Citrate lyase, alpha subunit [Energy production and conversion]	NA|180aa|up_2|NZ_CP009459.1_1676908_1677448_+	pfam03802, CitX, Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase	NA|282aa|up_1|NZ_CP009459.1_1677425_1678271_+	TIGR03125, citrate_citG, triphosphoribosyl-dephospho-CoA synthase CitG	NA|344aa|up_0|NZ_CP009459.1_1678357_1679389_+	COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]	NA|71aa|down_0|NZ_CP009459.1_1679806_1680019_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|395aa|down_1|NZ_CP009459.1_1680275_1681460_+	PRK03906, PRK03906, mannonate dehydratase; Provisional	NA|261aa|down_2|NZ_CP009459.1_1681534_1682317_+	PRK10225, PRK10225, Uxu operon transcriptional regulator	NA|266aa|down_3|NZ_CP009459.1_1682329_1683127_-	COG5662, COG5662, Predicted transmembrane transcriptional regulator (anti-sigma factor) [Transcription]	NA|183aa|down_4|NZ_CP009459.1_1683123_1683672_-	PRK12511, PRK12511, RNA polymerase sigma factor; Provisional	NA|177aa|down_5|NZ_CP009459.1_1683649_1684180_-	sd00006, TPR, Tetratricopeptide repeat	NA|194aa|down_6|NZ_CP009459.1_1684202_1684784_-	COG3038, CybB, Cytochrome B561 [Energy production and conversion]	NA|353aa|down_7|NZ_CP009459.1_1684916_1685975_-	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains	NA|195aa|down_8|NZ_CP009459.1_1686232_1686817_+	cd07040, HP, Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction	NA|558aa|down_9|NZ_CP009459.1_1686875_1688549_-	cd01346, Maltoporin-like, The Maltoporin-like channels (LamB porin) form a trimeric structure which facilitate the diffusion of maltodextrins and other sugars across the outer membrane of Gram-negative bacteria
GCF_000758325.1_ASM75832v1	NZ_CP009459	Cedecea neteri strain ND14a, complete genome	2	2420466-2420557	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	GATGCATTGTTTATCCCATCTCCCTTT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA,NA|70aa|down_6|NZ_CP009459.1_2431662_2431872_+,NA|205aa|down_9|NZ_CP009459.1_2433163_2433778_+	NA|428aa|up_9|NZ_CP009459.1_2407736_2409020_-	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional	NA|288aa|up_8|NZ_CP009459.1_2409068_2409932_-	cd03461, 1,2-HQD, Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates	NA|189aa|up_7|NZ_CP009459.1_2410210_2410777_+	pfam04264, YceI, YceI-like domain	NA|474aa|up_6|NZ_CP009459.1_2412339_2413761_-	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]	NA|473aa|up_5|NZ_CP009459.1_2413803_2415222_-	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]	NA|304aa|up_4|NZ_CP009459.1_2415503_2416415_+	cd13616, PBP2_OsmF, Substrate-binding domain OsmF of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold	NA|384aa|up_3|NZ_CP009459.1_2416533_2417685_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|315aa|up_2|NZ_CP009459.1_2417684_2418629_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|244aa|up_1|NZ_CP009459.1_2418612_2419344_+	COG1174, OpuBB, ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]	NA|252aa|up_0|NZ_CP009459.1_2419539_2420295_-	PRK15043, PRK15043, HTH-type transcriptional regulator MlrA	NA|374aa|down_0|NZ_CP009459.1_2420693_2421815_-	COG2850, COG2850, Uncharacterized conserved protein [Function unknown]	NA|1757aa|down_1|NZ_CP009459.1_2422325_2427596_+	pfam11725, AvrE, Pathogenicity factor	NA|142aa|down_2|NZ_CP009459.1_2427600_2428026_+	cd17024, T3SC_IA_DspF-like, Class IA type III secretion system chaperone protein, similar to Erwinia amylovora DspF (DspF/AvrF family protein)	NA|167aa|down_3|NZ_CP009459.1_2428066_2428567_-	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins	NA|340aa|down_4|NZ_CP009459.1_2428766_2429786_+	cd00254, LT-like, lytic transglycosylase(LT)-like domain	NA|325aa|down_5|NZ_CP009459.1_2430592_2431567_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|70aa|down_6|NZ_CP009459.1_2431662_2431872_+	NA	NA|138aa|down_7|NZ_CP009459.1_2431937_2432351_+	pfam17001, T3SS_basalb_I, Type III secretion basal body protein I, YscI, HrpB, PscI	NA|267aa|down_8|NZ_CP009459.1_2432357_2433158_+	TIGR02544, YOP_proteins_translocation_lipoprotein, type III secretion apparatus lipoprotein, YscJ/HrcJ family	NA|205aa|down_9|NZ_CP009459.1_2433163_2433778_+	NA
GCF_000758325.1_ASM75832v1	NZ_CP009459	Cedecea neteri strain ND14a, complete genome	3	2932519-2932655	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,DEDDh,RT,WYL,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA|47aa|up_0|NZ_CP009459.1_2932150_2932291_-,NA|30aa|down_7|NZ_CP009459.1_2941762_2941852_+	NA|427aa|up_9|NZ_CP009459.1_2921866_2923147_+	PRK10948, PRK10948, Fe-S cluster assembly protein SufD	NA|407aa|up_8|NZ_CP009459.1_2923143_2924364_+	PRK09295, PRK09295, cysteine desulfurase SufS	NA|139aa|up_7|NZ_CP009459.1_2924375_2924792_+	PRK09296, PRK09296, cysteine desulfuration protein SufE	NA|333aa|up_6|NZ_CP009459.1_2924901_2925900_+	PRK10190, PRK10190, L,D-transpeptidase; Provisional	NA|79aa|up_5|NZ_CP009459.1_2925966_2926203_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_4|NZ_CP009459.1_2926511_2927924_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|367aa|up_3|NZ_CP009459.1_2928588_2929689_+	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|308aa|up_2|NZ_CP009459.1_2929725_2930649_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|311aa|up_1|NZ_CP009459.1_2930721_2931654_+	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|47aa|up_0|NZ_CP009459.1_2932150_2932291_-	NA	NA|458aa|down_0|NZ_CP009459.1_2932816_2934190_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|215aa|down_1|NZ_CP009459.1_2934427_2935072_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|464aa|down_2|NZ_CP009459.1_2935129_2936521_-	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|383aa|down_3|NZ_CP009459.1_2936747_2937896_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|401aa|down_4|NZ_CP009459.1_2938192_2939395_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|313aa|down_5|NZ_CP009459.1_2939509_2940448_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP009459.1_2940444_2941470_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP009459.1_2941762_2941852_+	NA	NA|194aa|down_8|NZ_CP009459.1_2941942_2942524_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|283aa|down_9|NZ_CP009459.1_2942860_2943709_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]
GCF_000758325.1_ASM75832v1	NZ_CP009459	Cedecea neteri strain ND14a, complete genome	4	3131102-3131177	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	AGAATATTGTTTATCCTCTCTCC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA,NA	NA|305aa|up_9|NZ_CP009459.1_3121266_3122181_-	TIGR03828, pfkB, 1-phosphofructokinase	NA|285aa|up_8|NZ_CP009459.1_3122205_3123060_-	PRK12737, gatY, tagatose-bisphosphate aldolase subunit GatY	NA|277aa|up_7|NZ_CP009459.1_3123376_3124207_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|318aa|up_6|NZ_CP009459.1_3124217_3125171_+	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|490aa|up_5|NZ_CP009459.1_3125173_3126643_+	pfam11884, DUF3404, Domain of unknown function (DUF3404)	NA|221aa|up_4|NZ_CP009459.1_3126629_3127292_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|273aa|up_3|NZ_CP009459.1_3127288_3128107_+	pfam11060, DUF2861, Protein of unknown function (DUF2861)	NA|396aa|up_2|NZ_CP009459.1_3128196_3129384_+	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|309aa|up_1|NZ_CP009459.1_3129510_3130437_+	TIGR02277, Transcriptional_repressor_PaaX, phenylacetic acid degradation operon negative regulatory protein PaaX	NA|199aa|up_0|NZ_CP009459.1_3130451_3131048_+	TIGR02287, Phenylacetic_acid_degradation_protein_PaaY, phenylacetic acid degradation protein PaaY	NA|202aa|down_0|NZ_CP009459.1_3131226_3131832_-	PRK00170, PRK00170, azoreductase; Reviewed	NA|1300aa|down_1|NZ_CP009459.1_3132045_3135945_+	PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional	NA|219aa|down_2|NZ_CP009459.1_3135978_3136635_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|766aa|down_3|NZ_CP009459.1_3136702_3139000_-	cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site	NA|181aa|down_4|NZ_CP009459.1_3139186_3139729_+	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|84aa|down_5|NZ_CP009459.1_3140125_3140377_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|550aa|down_6|NZ_CP009459.1_3140483_3142133_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|166aa|down_7|NZ_CP009459.1_3142733_3143231_+	pfam05591, T6SS_VipA, Type VI secretion system, VipA, VC_A0107 or Hcp2	NA|516aa|down_8|NZ_CP009459.1_3143263_3144811_+	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and    vesicular transport]	NA|447aa|down_9|NZ_CP009459.1_3144832_3146173_+	pfam05936, T6SS_VasE, Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE
GCF_000758325.1_ASM75832v1	NZ_CP009459	Cedecea neteri strain ND14a, complete genome	5	4099895-4099970	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	GGAATAAAAAGTGCCCTCTGTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA|86aa|up_2|NZ_CP009459.1_4096939_4097197_+,NA	NA|99aa|up_9|NZ_CP009459.1_4085169_4085466_-	pfam13744, HTH_37, Helix-turn-helix domain	NA|418aa|up_8|NZ_CP009459.1_4085847_4087101_+	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|1041aa|up_7|NZ_CP009459.1_4087100_4090223_+	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA|1028aa|up_6|NZ_CP009459.1_4090223_4093307_+	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional	NA|472aa|up_5|NZ_CP009459.1_4093303_4094719_+	PRK10504, PRK10504, putative transporter; Provisional	NA|465aa|up_4|NZ_CP009459.1_4094715_4096110_+	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS	NA|241aa|up_3|NZ_CP009459.1_4096106_4096829_+	PRK10710, PRK10710, DNA-binding transcriptional regulator BaeR; Provisional	NA|86aa|up_2|NZ_CP009459.1_4096939_4097197_+	NA	NA|454aa|up_1|NZ_CP009459.1_4097326_4098688_+	PRK15452, PRK15452, putative protease; Provisional	NA|300aa|up_0|NZ_CP009459.1_4098938_4099838_+	PRK13054, PRK13054, lipid kinase; Reviewed	NA|351aa|down_0|NZ_CP009459.1_4100087_4101140_-	PRK09250, PRK09250, class I fructose-bisphosphate aldolase	NA|431aa|down_1|NZ_CP009459.1_4101399_4102692_+	TIGR00889, Putative_nucleoside_transporter_YegT, nucleoside transporter	NA|339aa|down_2|NZ_CP009459.1_4102691_4103708_+	COG1397, DraG, ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones]	NA|327aa|down_3|NZ_CP009459.1_4103694_4104675_+	cd01944, YegV_kinase_like, YegV-like sugar kinase	NA|249aa|down_4|NZ_CP009459.1_4104648_4105395_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|267aa|down_5|NZ_CP009459.1_4105481_4106282_-	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|263aa|down_6|NZ_CP009459.1_4106278_4107067_-	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|272aa|down_7|NZ_CP009459.1_4107580_4108396_-	pfam18863, AbiJ_NTD4, AbiJ N-terminal domain 4	NA|453aa|down_8|NZ_CP009459.1_4108434_4109793_-	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|313aa|down_9|NZ_CP009459.1_4110304_4111243_+	pfam03895, YadA_anchor, YadA-like membrane anchor domain
GCF_000758325.1_ASM75832v1	NZ_CP009459	Cedecea neteri strain ND14a, complete genome	6	4549944-4550020	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,RT,WYL,DinG	Orphan	TATTGTTTATTCCCTCTCCCTCTGGG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,RT,WYL,DinG	NA,NA	NA|514aa|up_9|NZ_CP009459.1_4536472_4538014_-	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR	NA|484aa|up_8|NZ_CP009459.1_4538235_4539687_+	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional	NA|379aa|up_7|NZ_CP009459.1_4539683_4540820_+	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW	NA|360aa|up_6|NZ_CP009459.1_4541194_4542274_-	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|502aa|up_5|NZ_CP009459.1_4542450_4543956_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|332aa|up_4|NZ_CP009459.1_4543952_4544948_+	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins	NA|355aa|up_3|NZ_CP009459.1_4544976_4546041_+	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily	NA|413aa|up_2|NZ_CP009459.1_4546052_4547291_+	COG5276, COG5276, Uncharacterized conserved protein [Function unknown]	NA|400aa|up_1|NZ_CP009459.1_4547554_4548754_-	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|342aa|up_0|NZ_CP009459.1_4548861_4549887_+	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase	NA|181aa|down_0|NZ_CP009459.1_4550181_4550724_-	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|228aa|down_1|NZ_CP009459.1_4550720_4551404_-	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|387aa|down_2|NZ_CP009459.1_4551553_4552714_+	PRK09082, PRK09082, methionine aminotransferase; Validated	NA|242aa|down_3|NZ_CP009459.1_4552745_4553471_-	PRK08084, PRK08084, DnaA inactivator Hda	NA|429aa|down_4|NZ_CP009459.1_4553544_4554831_-	PRK10720, PRK10720, uracil transporter; Provisional	NA|209aa|down_5|NZ_CP009459.1_4554916_4555543_-	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|346aa|down_6|NZ_CP009459.1_4555766_4556804_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|213aa|down_7|NZ_CP009459.1_4556803_4557442_+	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|687aa|down_8|NZ_CP009459.1_4557615_4559676_+	TIGR03705, poly_P_kin, polyphosphate kinase 1	NA|514aa|down_9|NZ_CP009459.1_4559699_4561241_+	PRK10854, PRK10854, exopolyphosphatase; Provisional
