The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP009448	Achromobacter xylosoxidans C54, complete genome	6131060	1808760	1820067	6131060		Burkholderia_phage(50.0%)	15	NA	NA
WP_006388471.1|1808760_1809210_+	hypothetical protein	NA	A0A0N7IRF3	Acinetobacter_phage	37.1	5.0e-18
WP_049072536.1|1809206_1809395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006388472.1|1809387_1811055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035183554.1|1811047_1811647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006388474.1|1811656_1811956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_050807756.1|1811975_1812986_+	hypothetical protein	NA	A9YX04	Burkholderia_phage	52.2	1.4e-76
WP_006388476.1|1813020_1813764_+	hypothetical protein	NA	A9YX06	Burkholderia_phage	63.1	9.6e-83
WP_006388477.1|1813772_1814126_+	hypothetical protein	NA	A9YX11	Burkholderia_phage	65.8	6.1e-35
WP_006388478.1|1814122_1815304_+	hypothetical protein	NA	A9YX12	Burkholderia_phage	62.8	2.6e-130
WP_006388479.1|1815305_1815971_+	DUF2612 domain-containing protein	NA	A9YX13	Burkholderia_phage	60.6	7.3e-74
WP_080747538.1|1815985_1816930_+	hypothetical protein	NA	A0A0M3ULD8	Salmonella_phage	54.1	5.8e-16
WP_006388482.1|1817524_1817875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006388483.1|1817877_1818900_-	DNA recombinase	NA	A0A2H4JE37	uncultured_Caudovirales_phage	32.3	3.7e-24
WP_006388484.1|1819085_1819547_+	hypothetical protein	NA	A0A0U5LBV3	unidentified_phage	37.2	7.7e-14
WP_006388485.1|1819536_1820067_+	hypothetical protein	NA	A0A2H4JFP9	uncultured_Caudovirales_phage	57.4	4.1e-43
>prophage 2
NZ_CP009448	Achromobacter xylosoxidans C54, complete genome	6131060	2660596	2668531	6131060	tRNA	Moraxella_phage(33.33%)	9	NA	NA
WP_006388149.1|2660596_2661184_+	DUF1949 domain-containing protein	NA	A0A1X9I5T8	Streptococcus_phage	36.8	1.2e-19
WP_006388150.1|2661217_2661592_-	thioredoxin	NA	V9SJ74	Achromobacter_phage	27.8	1.9e-10
WP_006388151.1|2661789_2662812_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_006388152.1|2663190_2663547_+	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA	NA
WP_006388153.1|2663631_2664924_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.3	5.4e-65
WP_006388154.1|2665032_2666064_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.6	1.4e-92
WP_006388155.1|2666133_2666775_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_006388156.1|2666963_2667722_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.6	1.5e-67
WP_050807754.1|2667706_2668531_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	45.2	2.5e-31
>prophage 3
NZ_CP009448	Achromobacter xylosoxidans C54, complete genome	6131060	3767699	3821371	6131060	capsid,terminase,tail,protease,head,portal	uncultured_Caudovirales_phage(19.23%)	62	NA	NA
WP_006386181.1|3767699_3768998_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	54.1	1.7e-130
WP_006386182.1|3769099_3769753_-	ATP-dependent Clp endopeptidase, proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.7	2.2e-54
WP_006386183.1|3769757_3771068_-	trigger factor	NA	NA	NA	NA	NA
WP_006386184.1|3771236_3771992_-	peptidase	NA	NA	NA	NA	NA
WP_006386185.1|3772254_3772800_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	32.7	1.3e-20
WP_006225311.1|3772900_3773107_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	59.7	1.4e-15
WP_006386186.1|3773399_3773963_-	DUF924 domain-containing protein	NA	A0A1V0SIY0	Klosneuvirus	41.2	1.2e-16
WP_006386187.1|3774187_3774391_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	3.1e-15
WP_006386188.1|3774760_3775081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038503909.1|3775171_3775570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006386190.1|3775692_3775980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006386191.1|3776073_3776346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006386192.1|3776447_3776843_-	enamine deaminase RidA	NA	NA	NA	NA	NA
WP_006386193.1|3776869_3778018_-	alanine racemase	NA	NA	NA	NA	NA
WP_006386194.1|3778164_3779082_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_020928335.1|3779264_3779663_-	RidA family protein	NA	NA	NA	NA	NA
WP_026384511.1|3779730_3780921_-	MFS transporter	NA	NA	NA	NA	NA
WP_006386197.1|3781054_3781636_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_006386198.1|3781759_3782287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006386199.1|3782357_3782663_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006386200.1|3782686_3782995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006386201.1|3783061_3783919_-	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	41.7	1.1e-50
WP_006386202.1|3784155_3785115_+	metal-dependent phosphohydrolase	NA	NA	NA	NA	NA
WP_006386203.1|3785138_3786356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006386204.1|3786399_3787110_-	aquaporin Z	NA	A0A1B1ISL4	uncultured_Mediterranean_phage	50.0	1.2e-05
WP_006386205.1|3787252_3787834_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_006386206.1|3787835_3789392_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_038503912.1|3789388_3791068_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_006386208.1|3791064_3792603_-	glycerol kinase	NA	NA	NA	NA	NA
WP_006386209.1|3792617_3794075_-	MFS transporter	NA	NA	NA	NA	NA
WP_006386210.1|3794297_3794687_+	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_006386211.1|3794791_3795151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006386212.1|3795161_3795674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_035182376.1|3795775_3796048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006387661.1|3796565_3797276_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	38.7	1.7e-36
WP_006387660.1|3797241_3797436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038504971.1|3797571_3797793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038503916.1|3798157_3798424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038503919.1|3798426_3798918_-	hypothetical protein	NA	I6NSS1	Burkholderia_phage	59.9	6.9e-45
WP_006387652.1|3799424_3800153_-	hypothetical protein	NA	A0A0B5A5A1	Achromobacter_phage	51.5	1.2e-64
WP_006387906.1|3800152_3800449_-	hypothetical protein	NA	A0A0B5A4G0	Achromobacter_phage	50.0	5.6e-18
WP_038503922.1|3800448_3803622_-	host specificity protein J	NA	A4JX16	Burkholderia_virus	47.3	4.5e-278
WP_038503924.1|3803618_3804233_-|tail	tail assembly protein	tail	A4JX15	Burkholderia_virus	57.1	7.3e-52
WP_038503927.1|3804236_3805010_-	hydrolase Nlp/P60	NA	A4JX14	Burkholderia_virus	50.6	5.0e-66
WP_038503930.1|3805011_3805740_-|tail	phage minor tail protein L	tail	Q6JIL5	Burkholderia_virus	54.9	6.8e-65
WP_050807749.1|3805748_3805979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006387644.1|3807523_3807865_-	hypothetical protein	NA	Q6UAW6	Klebsiella_phage	54.5	5.7e-30
WP_006387643.1|3807861_3810837_-|tail	phage tail tape measure protein	tail	A0A2H4J9A1	uncultured_Caudovirales_phage	32.5	6.4e-93
WP_080564275.1|3810870_3811287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006387641.1|3811247_3811667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006387640.1|3811742_3812678_-	hypothetical protein	NA	G8CLB2	Synechococcus_phage	40.7	2.2e-60
WP_035183160.1|3812710_3812905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006387638.1|3812940_3813363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006387637.1|3813359_3813662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006387636.1|3813667_3814672_-|capsid	minor capsid protein E	capsid	A0A2H4J890	uncultured_Caudovirales_phage	41.9	2.0e-67
WP_006387635.1|3814752_3815103_-|head	head decoration protein	head	A0A2H4JF15	uncultured_Caudovirales_phage	49.6	1.5e-17
WP_006387634.1|3815130_3816240_-|protease	Clp protease ClpP	protease	A0A2H4JDI2	uncultured_Caudovirales_phage	36.1	3.1e-45
WP_006387633.1|3816268_3817768_-|portal	phage portal protein	portal	A0A2H4JFL5	uncultured_Caudovirales_phage	49.8	6.4e-126
WP_006387632.1|3817764_3817971_-	hypothetical protein	NA	A0A2H4EUL1	Aeromonas_phage	42.6	4.5e-06
WP_006387631.1|3818019_3820014_-|terminase	terminase	terminase	R9TMM4	Vibrio_phage	37.4	4.7e-116
WP_006387630.1|3820091_3820589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006387629.1|3820585_3821371_-	hypothetical protein	NA	A0A1B0Z000	Pseudomonas_phage	39.7	8.8e-34
>prophage 4
NZ_CP009448	Achromobacter xylosoxidans C54, complete genome	6131060	5563627	5580207	6131060	tail	Burkholderia_virus(33.33%)	17	NA	NA
WP_006385703.1|5563627_5564446_+	NAD(P)-dependent oxidoreductase	NA	W8CYX9	Bacillus_phage	49.3	1.4e-10
WP_006385702.1|5564464_5565394_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_006385701.1|5565535_5566132_-|tail	tail assembly protein	tail	C7BGD3	Burkholderia_phage	53.0	1.9e-49
WP_035182020.1|5566128_5566365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080747611.1|5566524_5569764_-	host specificity protein J	NA	A4JX16	Burkholderia_virus	45.3	1.3e-261
WP_006385697.1|5569889_5570495_-|tail	tail assembly protein	tail	Q6JIL3	Burkholderia_virus	55.7	1.0e-50
WP_006385696.1|5570491_5571271_-	hydrolase Nlp/P60	NA	Q3HQU3	Burkholderia_phage	47.3	1.5e-65
WP_006385695.1|5571273_5572002_-|tail	phage minor tail protein L	tail	Q6JIL5	Burkholderia_virus	58.3	2.2e-71
WP_006385694.1|5572004_5573966_-	hypothetical protein	NA	A0A0K0KVF1	Prochlorococcus_phage	36.2	1.9e-13
WP_006385693.1|5573962_5574307_-	hypothetical protein	NA	A0A0S2SYI2	Pseudomonas_phage	38.4	1.1e-20
WP_006385692.1|5574303_5575590_-	hypothetical protein	NA	K7PH87	Enterobacterial_phage	41.1	3.1e-12
WP_006385691.1|5575647_5575938_-	DUF4035 domain-containing protein	NA	S4TND7	Salmonella_phage	50.0	9.1e-13
WP_006385690.1|5575937_5576411_-|tail	tail protein	tail	A4JX08	Burkholderia_virus	44.4	1.4e-26
WP_006385689.1|5576416_5576884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006385688.1|5577135_5577777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006385687.1|5578001_5578697_+	LexA family transcriptional repressor	NA	NA	NA	NA	NA
WP_006385686.1|5578749_5580207_-	DUF1254 domain-containing protein	NA	M1IA53	Paramecium_bursaria_Chlorella_virus	35.8	3.6e-65
