assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_000758225.1_ASM75822v1	NZ_CP009447	Mycobacterium abscessus subsp. bolletii strain MM1513, complete genome	1	266359-266453	1	CRISPRCasFinder	no		csa3,cas3,WYL,cas4,DEDDh,DinG	Orphan	TTGTTCGGGTTCAGCGGGCTGGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,cas4,DEDDh,DinG	NA,NA|296aa|down_4|NZ_CP009447.1_272279_273167_+	NA|355aa|up_9|NZ_CP009447.1_257319_258384_-	cd00608, GalT, Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate	NA|161aa|up_8|NZ_CP009447.1_258449_258932_-	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase	NA|418aa|up_7|NZ_CP009447.1_258862_260116_-	cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 2	NA|197aa|up_6|NZ_CP009447.1_260238_260829_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|358aa|up_5|NZ_CP009447.1_260825_261899_-	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|264aa|up_4|NZ_CP009447.1_261911_262703_-	PRK07814, PRK07814, SDR family oxidoreductase	NA|287aa|up_3|NZ_CP009447.1_262794_263655_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|283aa|up_2|NZ_CP009447.1_263659_264508_-	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|222aa|up_1|NZ_CP009447.1_264517_265183_-	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|366aa|up_0|NZ_CP009447.1_265234_266332_+	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family	NA|530aa|down_0|NZ_CP009447.1_266822_268412_+	PRK06188, PRK06188, acyl-CoA synthetase; Validated	NA|201aa|down_1|NZ_CP009447.1_268456_269059_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|140aa|down_2|NZ_CP009447.1_269048_269468_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|757aa|down_3|NZ_CP009447.1_269902_272173_+	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional	NA|296aa|down_4|NZ_CP009447.1_272279_273167_+	NA	NA|177aa|down_5|NZ_CP009447.1_273227_273758_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|374aa|down_6|NZ_CP009447.1_274615_275737_-	PRK14033, PRK14033, bifunctional 2-methylcitrate synthase/citrate synthase	NA|305aa|down_7|NZ_CP009447.1_275736_276651_-	TIGR02317, Methylisocitrate_lyase, methylisocitrate lyase	NA|502aa|down_8|NZ_CP009447.1_276647_278153_-	COG2079, PrpD, Uncharacterized protein involved in propionate catabolism [General function prediction only]	NA|474aa|down_9|NZ_CP009447.1_278270_279692_+	COG3800, COG3800, Predicted transcriptional regulator [General function prediction only]
GCF_000758225.1_ASM75822v1	NZ_CP009447	Mycobacterium abscessus subsp. bolletii strain MM1513, complete genome	2	728825-728955	2	CRISPRCasFinder	no	csa3	csa3,cas3,WYL,cas4,DEDDh,DinG	Type I-A	GTATGTCCGACCAGGGTTGCGTGCTTTTCCTCTTCTACCCGCACGG	46	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,cas4,DEDDh,DinG	NA|226aa|up_3|NZ_CP009447.1_725670_726348_+,NA|161aa|up_2|NZ_CP009447.1_726347_726830_+,NA|55aa|up_0|NZ_CP009447.1_728367_728532_-,NA|279aa|down_8|NZ_CP009447.1_737624_738461_+,NA|64aa|down_9|NZ_CP009447.1_738457_738649_-	NA|400aa|up_9|NZ_CP009447.1_718309_719509_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|345aa|up_8|NZ_CP009447.1_719508_720543_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|357aa|up_7|NZ_CP009447.1_720523_721594_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|465aa|up_6|NZ_CP009447.1_721590_722985_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|389aa|up_5|NZ_CP009447.1_722981_724148_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|509aa|up_4|NZ_CP009447.1_724147_725674_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|226aa|up_3|NZ_CP009447.1_725670_726348_+	NA	NA|161aa|up_2|NZ_CP009447.1_726347_726830_+	NA	NA|504aa|up_1|NZ_CP009447.1_726826_728338_-	cd03788, GT20_TPS, trehalose-6-phosphate synthase	NA|55aa|up_0|NZ_CP009447.1_728367_728532_-	NA	NA|316aa|down_0|NZ_CP009447.1_728983_729931_+	pfam14240, YHYH, YHYH protein	NA|527aa|down_1|NZ_CP009447.1_729992_731573_-	pfam08237, PE-PPE, PE-PPE domain	NA|172aa|down_2|NZ_CP009447.1_731939_732455_-	cd08899, SRPBCC_CalC_Aha1-like_6, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins	csa3|113aa|down_3|NZ_CP009447.1_732447_732786_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|421aa|down_4|NZ_CP009447.1_732897_734160_+	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters	NA|178aa|down_5|NZ_CP009447.1_734214_734748_+	pfam04978, DUF664, Protein of unknown function (DUF664)	NA|510aa|down_6|NZ_CP009447.1_734790_736320_+	cd07099, ALDH_DDALDH, Methylomonas sp	NA|289aa|down_7|NZ_CP009447.1_736378_737245_+	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family	NA|279aa|down_8|NZ_CP009447.1_737624_738461_+	NA	NA|64aa|down_9|NZ_CP009447.1_738457_738649_-	NA
GCF_000758225.1_ASM75822v1	NZ_CP009447	Mycobacterium abscessus subsp. bolletii strain MM1513, complete genome	3	1322158-1322246	3	CRISPRCasFinder	no	cas3	csa3,cas3,WYL,cas4,DEDDh,DinG	Unclear	AAGCTCAGCAGAAGTCAAAGCGTG	24	0	0	NA	NA	NA	1	1	Unclear	csa3,cas3,WYL,cas4,DEDDh,DinG	NA|64aa|up_3|NZ_CP009447.1_1319884_1320076_-,NA|136aa|down_1|NZ_CP009447.1_1323580_1323988_+	NA|327aa|up_9|NZ_CP009447.1_1315050_1316031_-	COG1162, COG1162, Predicted GTPases [General function prediction only]	NA|432aa|up_8|NZ_CP009447.1_1316027_1317323_-	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|252aa|up_7|NZ_CP009447.1_1317381_1318137_+	pfam02586, SRAP, SOS response associated peptidase (SRAP)	NA|169aa|up_6|NZ_CP009447.1_1318123_1318630_-	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|236aa|up_5|NZ_CP009447.1_1318779_1319487_+	TIGR02947, putative_RNA_polymerase_sigma_factor, RNA polymerase sigma-70 factor, TIGR02947 family	NA|103aa|up_4|NZ_CP009447.1_1319483_1319792_+	TIGR03988, antisig_RsrA, mycothiol system anti-sigma-R factor	NA|64aa|up_3|NZ_CP009447.1_1319884_1320076_-	NA	NA|73aa|up_2|NZ_CP009447.1_1320058_1320277_+	PRK05889, PRK05889, biotin/lipoyl-binding carrier protein	NA|497aa|up_1|NZ_CP009447.1_1320288_1321779_+	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|85aa|up_0|NZ_CP009447.1_1321855_1322110_-	pfam02467, Whib, Transcription factor WhiB	NA|326aa|down_0|NZ_CP009447.1_1322525_1323503_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|136aa|down_1|NZ_CP009447.1_1323580_1323988_+	NA	NA|162aa|down_2|NZ_CP009447.1_1323990_1324476_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|369aa|down_3|NZ_CP009447.1_1324468_1325575_-	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|204aa|down_4|NZ_CP009447.1_1325576_1326188_-	PRK13462, PRK13462, acid phosphatase; Provisional	NA|266aa|down_5|NZ_CP009447.1_1326249_1327047_+	pfam13614, AAA_31, AAA domain	NA|407aa|down_6|NZ_CP009447.1_1327065_1328286_-	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL	cas3|491aa|down_7|NZ_CP009447.1_1328282_1329755_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|228aa|down_8|NZ_CP009447.1_1330015_1330699_+	pfam13794, MiaE_2, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like	NA|244aa|down_9|NZ_CP009447.1_1330817_1331549_-	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional
GCF_000758225.1_ASM75822v1	NZ_CP009447	Mycobacterium abscessus subsp. bolletii strain MM1513, complete genome	4	3666245-3666332	4	CRISPRCasFinder	no	csa3	csa3,cas3,WYL,cas4,DEDDh,DinG	Type I-A	CCAGCCACCGCACACGCCGTTGTAGCAGCCG	31	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,cas4,DEDDh,DinG	NA,NA|194aa|down_9|NZ_CP009447.1_3675509_3676091_-	NA|402aa|up_9|NZ_CP009447.1_3655582_3656788_+	PRK03858, PRK03858, DNA polymerase IV; Validated	NA|261aa|up_8|NZ_CP009447.1_3656814_3657597_-	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains	NA|249aa|up_7|NZ_CP009447.1_3657722_3658469_+	PRK02101, PRK02101, peroxide stress protein YaaA	NA|597aa|up_6|NZ_CP009447.1_3658458_3660249_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|145aa|up_5|NZ_CP009447.1_3660342_3660777_-	pfam05610, DUF779, Protein of unknown function (DUF779)	NA|507aa|up_4|NZ_CP009447.1_3660757_3662278_-	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|52aa|up_3|NZ_CP009447.1_3662353_3662509_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|671aa|up_2|NZ_CP009447.1_3662669_3664682_+	cd06179, MFS_TRI12_like, Fungal trichothecene efflux pump (TRI12) of the Major Facilitator Superfamily of transporters	NA|199aa|up_1|NZ_CP009447.1_3664632_3665229_-	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown]	NA|307aa|up_0|NZ_CP009447.1_3665287_3666208_+	TIGR03560, F420_Rv1855c, probable F420-dependent oxidoreductase, Rv1855c family	NA|148aa|down_0|NZ_CP009447.1_3666616_3667060_-	pfam10604, Polyketide_cyc2, Polyketide cyclase / dehydrase and lipid transport	NA|379aa|down_1|NZ_CP009447.1_3667096_3668233_-	pfam03583, LIP, Secretory lipase	NA|72aa|down_2|NZ_CP009447.1_3668255_3668471_-	pfam14013, MT0933_antitox, MT0933-like antitoxin protein	NA|278aa|down_3|NZ_CP009447.1_3668525_3669359_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|801aa|down_4|NZ_CP009447.1_3669388_3671791_-	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|226aa|down_5|NZ_CP009447.1_3671908_3672586_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|367aa|down_6|NZ_CP009447.1_3672582_3673683_-	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain	NA|244aa|down_7|NZ_CP009447.1_3673685_3674417_-	PRK07854, PRK07854, enoyl-CoA hydratase; Provisional	NA|363aa|down_8|NZ_CP009447.1_3674441_3675530_+	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|194aa|down_9|NZ_CP009447.1_3675509_3676091_-	NA
GCF_000758225.1_ASM75822v1	NZ_CP009447	Mycobacterium abscessus subsp. bolletii strain MM1513, complete genome	5	4464142-4464243	5	CRISPRCasFinder	no		csa3,cas3,WYL,cas4,DEDDh,DinG	Orphan	GGATACGGCGCCCCGCCGCAAGCA	24	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,cas4,DEDDh,DinG	NA|98aa|up_6|NZ_CP009447.1_4456762_4457056_-,NA	NA|349aa|up_9|NZ_CP009447.1_4454853_4455900_-	pfam11583, AurF, P-aminobenzoate N-oxygenase AurF	NA|112aa|up_8|NZ_CP009447.1_4456046_4456382_+	pfam16170, DUF4873, Domain of unknown function (DUF4873)	NA|97aa|up_7|NZ_CP009447.1_4456448_4456739_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|up_6|NZ_CP009447.1_4456762_4457056_-	NA	NA|511aa|up_5|NZ_CP009447.1_4457121_4458654_-	pfam00823, PPE, PPE family	NA|103aa|up_4|NZ_CP009447.1_4458659_4458968_-	pfam00934, PE, PE family	NA|196aa|up_3|NZ_CP009447.1_4459392_4459980_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|146aa|up_2|NZ_CP009447.1_4460383_4460821_-	pfam03994, DUF350, Domain of Unknown Function (DUF350)	NA|389aa|up_1|NZ_CP009447.1_4460859_4462026_-	pfam03738, GSP_synth, Glutathionylspermidine synthase preATP-grasp	NA|205aa|up_0|NZ_CP009447.1_4462025_4462640_-	pfam06693, DUF1190, Protein of unknown function (DUF1190)	NA|155aa|down_0|NZ_CP009447.1_4464981_4465446_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|502aa|down_1|NZ_CP009447.1_4465442_4466948_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|486aa|down_2|NZ_CP009447.1_4466944_4468402_+	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|505aa|down_3|NZ_CP009447.1_4468398_4469913_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|629aa|down_4|NZ_CP009447.1_4471170_4473057_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|225aa|down_5|NZ_CP009447.1_4473063_4473738_-	PRK07765, PRK07765, aminodeoxychorismate/anthranilate synthase component II	NA|239aa|down_6|NZ_CP009447.1_4473795_4474512_-	pfam05949, DUF881, Bacterial protein of unknown function (DUF881)	NA|88aa|down_7|NZ_CP009447.1_4474711_4474975_+	PRK00159, PRK00159, putative septation inhibitor protein; Reviewed	NA|142aa|down_8|NZ_CP009447.1_4475129_4475555_+	pfam10756, bPH_6, Bacterial PH domain	NA|300aa|down_9|NZ_CP009447.1_4475613_4476513_+	TIGR00027, Hypothetical_protein_Rv0893c/MT0917/Mb0917c
